Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  318  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106247857--106248018
89
1.8
89
84
5
222
27
22
17
32
1.97
106248077--106248237
89
1.8
89
84
5
220
28
23
16
31
1.96
106248411--106248512
44
2.3
44
91
1
161
27
21
22
28
1.99
106254975--106255072
19
5.2
19
86
7
137
36
15
10
37
1.81
106254994--106255066
36
2.0
36
94
0
128
38
12
10
38
1.78
106256441--106256496
26
2.2
26
96
0
103
28
7
28
35
1.84
106263441--106263496
26
2.2
26
100
0
112
30
7
26
35
1.83
106268404--106268441
19
2.1
19
85
5
51
50
2
0
47
1.15
106273385--106273444
26
2.3
27
83
11
81
38
21
23
16
1.93
106275662--106275745
25
3.4
25
71
0
60
28
19
27
25
1.98
106275733--106275784
25
2.1
25
85
7
70
38
17
25
19
1.93
106277148--106277201
26
2.1
26
89
0
81
33
24
12
29
1.92
106277721--106277756
10
3.5
10
96
3
63
19
13
8
58
1.61
106282886--106282920
17
2.1
17
94
0
61
28
17
2
51
1.59
106286984--106287048
21
2.7
24
77
20
73
60
0
0
40
0.97
106286997--106287066
11
6.6
11
82
15
85
62
0
0
37
0.95
106286996--106287066
31
2.3
31
72
25
60
63
0
0
36
0.95
106286997--106287065
19
3.6
19
86
11
81
63
0
0
36
0.94
106287005--106287062
12
5.2
12
88
12
56
65
0
0
34
0.93
106286982--106287060
8
10.8
8
73
17
57
60
0
0
39
0.97
106292670--106292715
21
2.1
22
92
4
76
28
19
32
19
1.96
106306391--106306428
11
3.2
12
86
13
53
23
7
5
63
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106310558--106310762
94
2.2
94
92
1
333
56
12
20
10
1.65
106314581--106314632
24
2.2
24
89
0
77
55
9
1
32
1.43
106315095--106315131
16
2.3
16
100
0
74
37
10
35
16
1.83
106320147--106320329
31
5.9
31
84
0
249
45
20
9
24
1.80
106320144--106320323
62
2.9
62
92
0
288
47
20
8
23
1.78
106320147--106320329
93
2.0
93
90
0
285
45
20
9
24
1.80
106324349--106324394
26
1.9
23
83
16
58
50
17
6
26
1.70
106327297--106327339
21
2.0
21
90
0
68
44
18
18
18
1.87
106328846--106328889
18
2.4
18
81
7
54
38
0
4
56
1.20
106329623--106329684
29
2.2
28
80
8
72
50
16
0
33
1.45
106331174--106331283
55
2.0
55
100
0
220
41
18
1
38
1.61
106331934--106331969
19
1.9
19
88
5
56
2
8
16
72
1.21
106335610--106335652
16
2.6
17
82
7
54
53
2
0
44
1.13
106335680--106335714
18
1.9
18
88
0
52
51
0
5
42
1.25
106337067--106337184
18
6.6
18
77
6
87
38
12
13
34
1.83
106337065--106337202
36
3.8
36
76
0
96
39
11
13
35
1.81
106337175--106337209
18
1.9
18
88
0
52
45
5
5
42
1.51
106337085--106337216
54
2.4
54
82
2
131
40
10
12
37
1.77
106340149--106340355
46
4.7
44
83
10
221
38
15
24
20
1.92
106340616--106340662
25
2.0
25
83
8
62
53
4
14
27
1.60
106343549--106343592
15
2.9
15
80
10
54
38
0
4
56
1.20
106343584--106343636
11
4.8
11
77
6
54
49
1
0
49
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106343578--106343636
23
2.7
22
75
10
59
49
1
0
49
1.11
106352982--106353099
43
2.8
42
73
6
105
24
16
25
33
1.95
106354299--106354382
39
2.1
39
95
2
150
29
25
21
23
1.99
106355309--106355351
22
2.0
22
90
0
68
13
25
27
32
1.94
106356821--106356877
23
2.5
22
72
10
53
22
8
24
43
1.81
106357586--106357676
19
4.8
19
73
2
76
32
25
20
20
1.97
106365222--106365278
22
2.7
21
79
12
64
1
36
0
61
1.07
106371558--106371652
26
3.5
26
68
18
66
43
2
3
51
1.29
106371549--106371684
57
2.4
58
78
2
157
44
2
3
49
1.32
106373358--106373506
42
3.5
42
78
1
156
41
19
14
24
1.88
106374281--106374305
11
2.3
11
100
0
50
36
48
0
16
1.46
106379632--106379687
18
3.3
18
70
14
64
50
5
1
42
1.35
106389025--106389054
2
15.0
2
100
0
60
0
0
50
50
1.00
106389209--106389265
15
3.9
15
88
2
89
35
0
12
52
1.39
106389205--106389263
30
2.0
28
93
6
100
32
0
11
55
1.36
106389638--106389702
21
3.0
22
73
8
69
16
20
23
40
1.92
106389864--106389904
19
2.2
19
87
12
59
46
0
24
29
1.53
106397873--106397998
25
5.0
25
92
4
191
63
0
19
16
1.36
106397873--106397998
51
2.5
50
90
5
191
63
0
19
16
1.36
106398056--106398099
21
2.2
20
88
8
63
72
0
9
18
1.10
106398112--106398150
17
2.3
17
86
0
51
71
2
10
15
1.23
106398147--106398189
20
2.2
20
87
8
61
76
0
13
9
1.01
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106398203--106398265
29
2.2
29
85
5
83
68
3
20
7
1.29
106407377--106407405
2
14.5
2
100
0
58
48
0
0
51
1.00
106414369--106414402
17
1.9
18
94
5
61
38
11
17
32
1.86
106418043--106418074
16
2.0
16
100
0
64
37
12
18
31
1.88
106421489--106421528
20
2.0
20
85
0
53
32
2
30
35
1.71
106426070--106426102
11
2.9
12
86
13
52
33
0
0
66
0.92
106432860--106432900
21
2.0
21
90
0
64
53
9
0
36
1.34
106433266--106433317
28
2.0
27
85
11
72
28
3
15
51
1.60
106441752--106441780
13
2.1
14
93
6
51
51
0
3
44
1.18
106442415--106442460
23
2.0
23
86
0
65
73
4
17
4
1.15
106443373--106443420
15
3.3
15
79
2
53
39
2
12
45
1.54
106443820--106443867
21
2.3
21
92
0
78
12
27
31
29
1.93
106443816--106443876
21
2.9
21
82
0
68
11
21
27
39
1.88
106447011--106447035
7
3.6
7
100
0
50
12
0
0
88
0.53
106451159--106451191
6
5.5
6
92
0
57
81
3
15
0
0.80
106451298--106451346
18
2.6
18
83
6
53
38
20
16
24
1.92
106451557--106451610
27
2.0
27
85
10
74
46
27
0
25
1.53
106451614--106451643
14
2.1
14
93
0
51
66
6
3
23
1.30
106452921--106452954
11
3.0
11
83
8
50
35
0
0
64
0.94
106453002--106453051
19
2.5
21
90
9
79
40
0
4
56
1.18
106455532--106455622
17
4.9
18
67
15
69
32
5
15
46
1.69
106455474--106455623
72
2.1
73
91
5
250
32
6
15
46
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106455477--106455623
37
4.0
37
90
3
244
32
6
15
45
1.71
106455622--106455678
9
6.4
9
85
4
80
22
12
21
43
1.85
106456469--106456507
3
13.0
3
100
0
78
33
0
0
66
0.92
106456791--106456898
48
2.2
48
85
0
135
18
16
27
37
1.93
106458323--106458476
43
3.6
43
79
10
156
24
19
25
31
1.98
106462183--106462207
2
12.5
2
100
0
50
48
0
0
52
1.00
106462604--106462676
31
2.4
31
88
4
103
28
13
9
47
1.74
106480859--106480903
24
1.9
23
86
4
63
66
0
0
33
0.92
106483385--106483462
31
2.6
29
82
9
102
46
1
0
52
1.08
106488239--106488330
48
1.9
48
97
0
175
32
4
15
47
1.65
106492877--106493207
163
2.0
164
96
1
610
42
7
6
43
1.59
106494429--106494511
41
2.0
41
97
0
157
30
7
18
44
1.76
106494442--106494506
21
3.1
21
61
12
53
30
9
18
41
1.82
106494513--106494569
20
2.9
20
94
2
98
63
0
28
8
1.24
106498205--106498318
55
2.1
55
85
1
149
14
20
18
46
1.84
106501788--106501917
54
2.4
52
78
7
127
42
20
18
18
1.90
106503394--106503495
44
2.3
45
84
3
125
30
22
13
33
1.93
106503412--106503500
46
2.0
44
88
4
133
29
25
13
31
1.94
106507636--106507672
14
2.4
17
86
13
53
48
0
0
51
1.00
106507822--106507872
14
3.6
14
74
7
50
68
0
13
17
1.21
106507861--106507894
16
2.1
16
88
5
50
76
5
14
2
1.09
106508989--106509084
39
2.5
39
80
6
108
20
23
28
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106511606--106511736
35
3.8
35
75
10
101
43
21
8
26
1.81
106524514--106524568
28
2.0
28
82
10
69
43
3
3
49
1.37
106527840--106527932
41
2.2
42
86
1
125
32
6
9
51
1.60
106535674--106535785
6
18.7
6
98
0
215
49
16
0
34
1.46
106539023--106539078
27
2.1
27
86
0
76
28
1
12
57
1.46
106539094--106539132
19
2.1
19
95
0
69
51
0
0
48
1.00
106545953--106546058
20
5.3
21
69
21
84
12
25
23
38
1.90
106545935--106546074
39
3.6
39
92
0
217
12
26
23
37
1.91
106550317--106550437
64
1.9
64
96
0
224
27
22
29
20
1.98
106553322--106553364
20
2.2
20
91
0
68
44
13
6
34
1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349