Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  197  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63812923--63813145
40
5.6
40
86
3
236
24
21
27
26
1.99
63812998--63813180
79
2.3
80
82
1
226
25
20
27
25
1.99
63819496--63819542
20
2.3
20
81
0
58
23
12
34
29
1.92
63821213--63821318
48
2.2
48
85
9
137
14
24
1
59
1.45
63822944--63822990
20
2.3
20
81
0
58
23
12
34
29
1.92
63825744--63825966
40
5.6
40
86
3
236
24
21
27
26
1.99
63825819--63826001
79
2.3
80
82
1
226
25
20
27
25
1.99
63828274--63828345
12
5.8
12
78
13
74
73
4
6
15
1.20
63828284--63828344
28
2.2
28
84
0
77
73
3
8
14
1.19
63828323--63828374
16
3.6
15
78
21
58
71
7
15
5
1.29
63828274--63828345
24
2.9
24
80
15
83
73
4
6
15
1.20
63828274--63828359
40
2.2
38
80
11
86
73
5
8
12
1.24
63828323--63828396
30
2.6
28
82
12
89
68
6
14
9
1.36
63829268--63829302
18
1.9
18
88
11
54
57
0
20
22
1.41
63830978--63831024
20
2.3
20
85
0
67
29
36
12
21
1.91
63845236--63845267
12
2.7
12
100
0
64
81
6
0
12
0.87
63847581--63847647
21
3.1
21
82
4
71
34
32
2
29
1.73
63852486--63852539
24
2.2
25
78
15
60
11
22
3
62
1.43
63860253--63860282
14
2.1
14
100
0
60
10
13
36
40
1.78
63863160--63863216
30
1.9
30
85
0
78
43
8
21
26
1.81
63863631--63863806
46
3.8
46
79
12
216
20
21
29
28
1.98
63863628--63863799
93
1.8
93
96
0
317
20
21
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63865389--63865561
93
1.9
93
92
0
292
27
31
21
19
1.98
63865382--63865557
46
3.8
46
76
12
189
28
30
21
19
1.97
63868462--63868633
93
1.8
93
89
0
272
27
29
20
22
1.99
63871690--63871862
93
1.9
93
92
0
292
27
31
21
19
1.98
63871683--63871858
46
3.8
46
76
12
189
28
30
21
19
1.97
63874750--63874924
46
3.8
46
73
15
155
30
27
20
22
1.98
63874758--63874928
92
1.8
93
87
3
256
29
28
20
22
1.98
63877306--63877384
15
5.4
14
78
4
68
56
13
17
11
1.66
63877315--63877384
30
2.3
30
83
9
81
55
12
18
12
1.68
63883350--63883400
7
7.1
7
74
12
50
1
17
1
78
0.94
63883350--63883399
16
3.5
14
75
21
50
2
18
2
78
0.95
63883354--63883403
14
3.6
14
81
7
66
2
20
2
76
0.99
63885423--63885452
10
3.1
10
90
9
53
0
10
0
90
0.47
63885426--63885451
9
2.9
9
100
0
52
0
7
0
92
0.39
63888521--63888692
93
1.8
93
91
2
283
27
27
22
22
1.99
63888513--63888688
46
3.8
46
75
14
182
28
27
22
22
1.99
63894339--63894378
19
2.1
19
85
0
53
25
35
17
22
1.95
63895620--63895667
14
3.4
14
85
0
60
18
31
6
43
1.75
63904496--63904524
13
2.2
13
100
0
58
62
10
0
27
1.28
63904748--63904803
21
2.7
21
83
2
69
37
19
25
17
1.94
63913116--63913190
29
2.6
28
79
4
87
26
28
14
30
1.95
63913419--63913453
16
2.2
16
89
0
52
11
22
17
48
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63913812--63913846
16
2.2
16
90
10
54
17
5
28
48
1.69
63919869--63919908
20
2.0
20
100
0
80
45
0
15
40
1.46
63922211--63922288
38
2.1
38
95
0
138
26
17
17
37
1.93
63925640--63925687
20
2.4
20
85
0
60
25
18
16
39
1.91
63925636--63925707
30
2.4
30
86
9
94
20
20
18
40
1.92
63927096--63927216
44
2.8
42
82
6
145
23
21
23
31
1.98
63928949--63929085
43
3.2
43
78
10
120
27
24
19
27
1.99
63929448--63929514
10
6.5
10
77
6
71
16
22
22
38
1.92
63929445--63929514
21
3.4
21
94
2
115
15
21
22
40
1.91
63929738--63929766
13
2.2
13
100
0
58
27
0
10
62
1.28
63935754--63935818
32
2.0
32
100
0
130
24
33
15
26
1.95
63936042--63936075
17
2.0
17
100
0
68
35
23
23
17
1.95
63945190--63945220
12
2.6
12
100
0
62
25
16
12
45
1.83
63945268--63945308
16
2.8
14
85
10
55
4
17
0
78
0.93
63946229--63946294
12
5.7
11
87
8
96
13
3
7
75
1.13
63946229--63946295
11
5.7
12
89
7
102
13
2
7
76
1.12
63946229--63946295
23
2.8
24
91
6
102
13
2
7
76
1.12
63952219--63952369
27
5.5
28
80
6
123
27
27
16
27
1.97
63952219--63952368
82
1.8
81
85
4
212
28
28
16
27
1.97
63960239--63960389
27
5.5
28
80
6
123
27
27
16
27
1.97
63973467--63973563
30
3.2
30
71
8
90
27
15
28
27
1.96
63975674--63975756
30
2.7
30
81
9
89
13
21
1
63
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
63975707--63975762
18
3.1
18
76
5
51
7
19
3
69
1.27
63975732--63975756
12
2.1
12
100
0
50
8
16
0
76
1.02
63975825--63975879
5
11.0
5
78
18
53
1
16
1
80
0.90
63975827--63975870
14
3.1
14
87
6
61
2
13
2
81
0.88
63975825--63975875
20
2.6
19
80
17
59
1
15
1
80
0.89
63975825--63975879
14
3.7
14
79
11
56
1
16
1
80
0.90
63978431--63978527
30
3.2
30
71
8
90
27
15
28
27
1.96
63980204--63980229
13
2.0
13
100
0
52
69
7
7
15
1.35
63982500--63982541
17
2.4
18
80
7
52
57
4
23
14
1.56
63988805--63988984
67
2.8
64
74
9
168
30
16
27
25
1.96
63996957--63996992
14
2.6
14
91
4
56
8
8
8
75
1.21
63999145--63999192
14
3.4
14
85
0
60
43
6
31
18
1.75
64000803--64000898
30
3.2
31
75
5
99
28
30
15
26
1.96
64001448--64001510
30
2.1
30
82
11
76
26
31
7
33
1.85
64010643--64010675
12
2.8
12
86
4
50
54
9
0
36
1.32
64018384--64018413
11
2.7
11
94
0
51
80
6
13
0
0.91
64018384--64018475
6
15.3
6
67
7
53
71
4
18
5
1.22
64018387--64018443
17
3.3
17
85
4
78
71
7
15
5
1.25
64018452--64018487
14
2.6
14
87
12
56
75
0
16
8
1.04
64018478--64018517
16
2.3
18
87
8
57
67
0
20
12
1.22
64025032--64025063
13
2.5
13
95
5
57
6
3
6
84
0.86
64025007--64025062
12
4.8
12
77
16
55
14
5
3
76
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64026944--64027021
29
2.7
28
84
11
104
25
14
30
29
1.94
64026974--64027301
174
1.9
174
96
0
602
29
14
24
30
1.95
64031612--64031665
20
2.7
20
82
0
63
24
20
18
37
1.94
64031612--64031685
30
2.5
30
86
8
98
21
20
18
39
1.93
64031612--64031676
20
3.2
20
71
16
53
23
21
16
38
1.93
64033270--64033334
11
5.5
11
75
18
51
72
4
7
15
1.24
64034398--64034440
21
2.0
22
90
9
70
72
4
13
9
1.26
64034460--64034497
13
2.8
13
82
17
51
73
0
18
7
1.06
64034461--64034511
21
2.4
21
74
6
50
74
1
17
5
1.11
64034514--64034576
33
1.9
33
84
12
85
53
6
26
12
1.62
64036353--64036406
20
2.7
20
82
0
63
24
20
18
37
1.94
64036353--64036426
30
2.5
30
86
8
98
21
20
18
39
1.93
64036353--64036417
20
3.2
20
71
16
53
23
21
16
38
1.93
64044898--64044946
16
3.6
13
77
17
55
73
4
6
16
1.19
64047450--64047511
10
5.9
10
74
10
52
33
32
3
30
1.74
64047450--64047512
21
3.0
21
88
2
90
33
33
3
30
1.74
64055838--64055934
30
3.2
30
77
2
106
28
27
15
27
1.96
64058469--64058525
5
11.0
5
75
20
55
75
1
19
3
1.04
64058573--64058603
12
2.6
12
100
0
62
45
12
16
25
1.83
64058629--64058688
30
2.0
31
83
9
79
58
1
25
15
1.46
64071335--64071389
15
3.8
15
85
2
69
1
21
1
74
1.01
64073403--64073437
17
2.1
17
88
0
52
25
8
5
60
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64082002--64082062
12
5.0
12
85
14
81
18
8
0
73
1.07
64082005--64082052
13
3.6
13
88
2
69
16
8
0
75
1.04
64085221--64085283
33
1.9
33
84
12
85
12
25
6
55
1.60
64085301--64085331
12
2.7
12
95
5
55
0
12
6
80
0.89
64086349--64086437
44
2.1
42
84
12
112
6
14
4
74
1.19
64086418--64086485
11
5.7
11
74
16
55
16
7
2
73
1.18
64086440--64086476
15
2.6
15
83
8
51
18
8
0
72
1.08
64088480--64088519
19
2.1
19
85
0
53
25
35
17
22
1.95
64089761--64089808
14
3.4
14
85
0
60
18
31
6
43
1.75
64090177--64090207
13
2.4
13
94
0
53
83
6
0
9
0.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349