Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  322  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107414080--107414113
14
2.5
14
95
4
61
20
0
0
79
0.73
107419671--107420085
141
3.0
138
89
3
597
30
18
26
24
1.98
107419889--107420093
45
4.6
44
67
15
114
30
17
24
27
1.97
107419654--107420119
134
3.4
135
87
4
641
30
18
25
25
1.98
107420422--107420540
44
2.7
45
81
6
143
28
15
24
31
1.96
107420422--107420555
44
3.0
43
81
6
142
30
16
22
30
1.96
107420530--107420652
62
2.0
59
84
7
158
35
17
21
25
1.95
107423014--107423103
45
2.0
45
86
4
128
31
15
17
35
1.92
107430730--107430767
15
2.7
14
84
8
51
39
2
18
39
1.65
107436098--107436141
18
2.4
18
80
0
52
0
38
0
61
0.96
107436710--107436786
28
2.8
28
70
20
72
31
7
6
54
1.54
107438482--107438517
12
3.0
12
87
0
54
25
27
5
41
1.77
107438490--107438521
16
1.9
17
93
6
57
25
28
6
40
1.79
107446659--107446801
73
2.0
73
91
2
234
30
17
21
30
1.96
107446814--107447159
72
4.6
74
83
4
419
32
16
19
32
1.94
107450219--107450264
21
2.2
21
100
0
92
23
36
4
34
1.75
107451575--107451599
11
2.3
11
100
0
50
64
0
28
8
1.22
107457040--107457090
19
2.6
19
84
6
57
31
1
1
64
1.15
107457374--107457415
20
2.1
20
91
8
68
52
0
7
40
1.29
107461671--107461696
6
4.3
6
100
0
52
30
53
0
15
1.42
107466603--107466645
22
2.0
22
100
0
86
41
13
9
34
1.77
107469896--107469921
7
3.7
7
100
0
52
11
0
0
88
0.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107472509--107472550
21
2.0
22
85
4
59
40
9
28
21
1.84
107481760--107481785
10
2.6
10
100
0
52
34
19
26
19
1.95
107484742--107484790
19
2.6
18
90
9
80
73
0
10
16
1.09
107484750--107484791
19
2.2
19
100
0
84
76
0
9
14
1.02
107485675--107485722
15
3.1
16
83
16
57
70
2
0
27
0.98
107485666--107485736
11
6.5
11
76
12
58
66
2
1
29
1.15
107495126--107495173
19
2.5
19
93
6
80
75
0
8
16
1.04
107496069--107496106
15
2.4
16
87
12
53
73
0
0
26
0.83
107498037--107498093
20
2.8
20
71
10
53
21
12
5
61
1.50
107498237--107498346
57
1.9
57
90
3
177
49
4
8
38
1.53
107498384--107498417
17
2.0
17
88
0
50
20
14
14
50
1.78
107498401--107498519
20
5.9
20
72
9
89
19
17
6
56
1.63
107498665--107498759
20
4.8
20
70
12
70
17
13
7
61
1.55
107498665--107498827
20
8.4
20
71
7
68
20
15
6
57
1.61
107498605--107498759
40
3.9
40
76
6
118
19
14
9
57
1.63
107499219--107499338
20
5.9
20
71
17
86
19
13
5
62
1.48
107499264--107499335
20
3.6
20
83
14
87
20
12
1
65
1.33
107499264--107499340
19
3.8
20
79
17
88
20
14
1
63
1.37
107499264--107499348
21
4.2
20
74
15
68
22
12
2
62
1.42
107507377--107507418
18
2.3
18
88
12
59
47
9
9
33
1.68
107508852--107509124
46
5.8
49
78
13
281
28
28
20
22
1.98
107508860--107509124
93
2.8
93
96
0
476
28
28
20
22
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107511613--107511689
38
2.0
38
100
0
154
29
33
2
33
1.72
107514831--107515077
6
42.5
6
82
5
150
38
0
60
0
1.08
107514831--107515077
14
18.2
14
75
5
150
38
0
60
0
1.08
107514875--107514949
29
2.6
29
82
2
98
30
1
66
1
1.08
107514834--107515070
75
3.2
74
79
10
261
37
0
61
0
1.08
107515329--107515443
2
61.5
2
71
13
75
41
0
56
0
1.11
107515312--107515483
49
3.6
46
77
13
170
37
0
61
0
1.05
107515303--107515482
6
32.3
6
74
12
84
36
0
62
0
1.04
107514971--107515709
406
1.8
400
91
2
1228
30
15
28
24
1.96
107528357--107528422
18
3.3
20
74
19
66
59
3
3
34
1.28
107528638--107528686
23
2.0
25
88
7
75
59
0
6
34
1.22
107528806--107528868
13
4.8
13
72
5
56
63
3
3
30
1.25
107528952--107528995
21
2.0
21
86
13
61
47
0
4
47
1.22
107529553--107529583
9
3.4
9
100
0
62
9
58
22
9
1.59
107532989--107533045
22
2.6
22
82
0
69
21
7
7
64
1.42
107533074--107533132
30
2.0
30
96
0
109
25
3
16
54
1.58
107533257--107533287
11
2.8
11
90
0
53
67
0
0
32
0.91
107543045--107543070
13
2.0
13
100
0
52
69
15
0
15
1.20
107546646--107546685
18
2.2
18
86
0
53
55
20
0
25
1.44
107555746--107555973
46
5.0
46
91
1
314
38
14
25
21
1.92
107558863--107558929
27
2.5
27
87
0
89
19
17
26
35
1.94
107561300--107561516
109
2.0
106
92
2
362
26
11
20
41
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107561759--107562005
121
2.0
122
89
3
374
29
25
7
37
1.83
107562155--107562261
52
2.1
52
100
0
214
35
18
15
29
1.93
107562757--107562817
32
1.9
32
82
0
77
47
42
3
6
1.45
107563869--107563991
3
40.0
3
73
8
86
30
7
2
59
1.38
107564190--107564228
15
2.5
15
87
4
51
33
2
2
61
1.23
107566425--107566490
28
2.4
28
86
0
87
27
19
25
27
1.99
107566631--107566655
7
3.6
7
100
0
50
64
12
12
12
1.51
107573255--107573390
25
5.1
25
72
11
110
54
5
7
33
1.50
107573344--107573406
25
2.5
25
76
5
74
63
3
3
30
1.25
107573480--107573560
25
3.3
26
80
13
82
56
2
7
33
1.40
107574999--107575046
22
2.2
21
78
10
51
37
16
6
39
1.74
107575025--107575096
19
3.9
18
87
10
103
36
13
11
38
1.81
107575018--107575096
35
2.2
37
86
13
121
35
15
10
39
1.81
107575039--107575094
17
3.5
15
88
9
60
35
16
10
37
1.83
107575285--107575320
16
2.2
17
95
5
65
69
0
0
30
0.89
107575299--107575382
24
3.3
25
79
15
84
57
4
2
35
1.33
107575460--107575493
3
11.7
3
90
6
52
61
0
0
38
0.96
107576106--107576161
16
3.4
16
77
18
69
28
0
5
66
1.14
107576106--107576178
34
2.1
35
94
5
130
31
0
5
63
1.17
107576206--107576241
18
1.9
18
88
5
54
83
0
13
2
0.76
107577414--107577762
88
4.1
86
79
14
368
36
19
16
28
1.93
107577594--107577835
75
3.2
75
85
8
348
35
19
17
27
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107589907--107589959
27
2.0
26
81
3
61
64
3
5
26
1.33
107589897--107590080
25
7.2
25
68
17
119
56
4
7
31
1.47
107590034--107590096
25
2.5
25
76
5
74
63
3
3
30
1.25
107590171--107590256
23
3.5
24
75
12
77
55
4
6
32
1.47
107590216--107590323
38
3.0
37
77
12
100
56
6
3
33
1.43
107590219--107590323
24
4.3
23
75
12
86
57
5
2
34
1.37
107590271--107590327
11
5.0
11
75
8
51
56
5
1
36
1.32
107590220--107590323
13
8.4
13
67
25
64
56
5
2
34
1.38
107590218--107590343
62
2.0
61
80
10
141
59
5
3
31
1.36
107591047--107591072
10
2.6
10
100
0
52
42
0
0
57
0.98
107591100--107591135
18
1.9
18
88
5
54
83
0
13
2
0.76
107598826--107598922
16
6.1
16
96
0
176
25
2
35
37
1.68
107599139--107599180
15
2.7
16
82
14
52
52
2
0
45
1.13
107599148--107599189
15
2.9
15
82
10
52
52
0
0
47
1.00
107599258--107599299
15
2.8
15
82
7
50
54
2
0
42
1.13
107599142--107599460
118
2.7
119
96
2
599
50
5
1
43
1.32
107599396--107599443
18
2.8
18
74
22
50
56
0
0
43
0.99
107599375--107599426
15
3.6
15
80
12
56
53
1
0
44
1.11
107601737--107601770
12
2.7
13
95
4
61
61
8
29
0
1.26
107601805--107601841
19
1.9
19
94
0
65
45
10
43
0
1.39
107602002--107602036
18
1.9
18
100
0
70
17
5
40
37
1.73
107606826--107606874
15
2.9
16
75
19
55
44
0
2
53
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107609554--107609734
3
60.7
3
73
7
109
59
3
6
29
1.41
107609592--107609663
23
2.8
26
76
18
80
52
2
11
33
1.51
107610026--107610256
116
2.0
115
93
0
390
31
22
25
21
1.98
107611791--107611992
45
4.5
45
69
9
144
24
22
21
31
1.99
107611402--107612085
268
2.6
265
83
2
818
25
23
20
30
1.98
107611361--107612082
134
5.4
134
83
3
731
25
23
20
30
1.98
107623891--107623930
21
2.0
20
90
5
62
67
0
10
22
1.20
107624023--107624224
3
67.7
3
72
6
106
59
4
6
29
1.42
107624193--107624227
16
2.2
16
89
0
52
68
2
0
28
1.04
107626145--107626217
30
2.4
30
97
0
137
28
23
4
43
1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349