Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  12  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3565013--3565086
38
1.9
38
83
0
94
32
8
17
41
1.79
3571062--3571110
21
2.3
21
89
0
71
32
26
20
20
1.97
3573845--3573878
5
6.8
5
100
0
68
82
0
0
17
0.67
3577918--3577988
16
4.4
16
89
0
106
36
7
26
29
1.83
3577970--3578063
44
2.1
44
88
7
136
32
5
25
36
1.79
3577969--3578075
46
2.5
41
79
18
105
33
4
24
37
1.76
3578142--3578192
26
2.0
25
88
3
75
45
0
3
50
1.20
3578153--3578331
58
3.1
58
76
11
134
53
3
1
41
1.27
3578300--3578342
21
2.0
21
86
9
59
62
2
0
34
1.08
3583687--3583727
5
7.8
5
89
10
64
80
0
2
17
0.82
3583685--3583727
22
2.0
21
95
4
77
79
0
2
18
0.85
3585552--3585579
12
2.3
12
100
0
56
25
14
0
60
1.34
3586858--3586886
6
5.0
6
95
4
51
82
0
0
17
0.66
3588528--3588562
18
1.9
18
88
0
52
42
2
11
42
1.55
3600116--3600165
24
2.1
23
82
14
57
44
2
0
54
1.11
3600109--3600181
34
2.3
29
78
19
76
38
1
0
60
1.06
3600190--3600233
22
2.0
22
86
0
61
52
0
0
47
1.00
3600784--3600817
17
1.9
17
88
5
50
35
0
0
64
0.94
3600862--3600898
10
3.5
11
82
10
51
32
0
5
62
1.18
3600858--3600915
25
2.3
26
80
11
77
34
0
5
60
1.19
3600883--3600911
14
2.0
15
93
6
51
31
0
6
62
1.22
3607040--3607212
45
3.8
46
79
13
187
21
21
28
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3607044--3607214
46
3.7
45
79
12
204
21
21
28
29
1.98
3607438--3607475
19
2.0
20
85
15
53
36
0
23
39
1.55
3614586--3614758
46
3.7
46
79
10
199
21
19
27
30
1.98
3614583--3614753
93
1.8
93
91
0
279
21
19
28
29
1.98
3614980--3615017
19
2.0
20
85
15
53
36
0
23
39
1.55
3624374--3624448
37
2.0
38
89
2
116
37
16
6
40
1.74
3627875--3628120
83
2.9
85
87
4
345
30
12
9
47
1.74
3633000--3633044
21
2.1
22
83
4
56
35
22
24
17
1.95
3637965--3638015
18
2.8
18
82
5
59
27
17
0
54
1.43
3638871--3639038
87
1.9
87
81
4
205
25
11
21
41
1.87
3642231--3642260
7
4.1
7
91
8
51
26
0
0
73
0.84
3642231--3642260
15
2.1
15
93
6
53
26
0
0
73
0.84
3642211--3642260
9
6.0
8
81
11
57
26
0
2
72
0.96
3649487--3649548
31
2.0
31
100
0
124
29
9
19
41
1.83
3660872--3660925
28
2.1
25
86
13
74
33
12
16
37
1.87
3660963--3661008
21
2.3
20
82
14
51
34
6
0
58
1.24
3663413--3663469
31
2.0
28
83
13
71
64
14
3
17
1.41
3664608--3664662
28
2.0
28
82
13
69
23
14
3
58
1.52
3671025--3671083
21
2.8
22
80
7
61
22
0
8
69
1.15
3671054--3671103
26
2.0
24
88
7
73
30
0
6
64
1.18
3674007--3674061
28
2.0
28
82
13
69
23
14
3
58
1.52
3681250--3681279
7
4.3
7
95
0
51
33
0
23
43
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3687432--3687470
18
2.1
19
85
4
53
79
0
15
5
0.90
3689118--3689162
21
2.1
21
83
0
54
46
2
22
28
1.63
3691741--3691768
7
4.0
7
100
0
56
42
0
0
57
0.99
3691757--3691806
20
2.5
21
80
9
68
30
0
2
68
1.01
3692606--3692639
17
1.9
18
88
5
52
50
11
2
35
1.54
3696499--3696552
21
2.6
21
90
0
81
35
5
27
31
1.80
3702978--3703312
171
2.0
171
92
0
553
28
24
17
30
1.97
3711585--3711627
17
2.5
17
92
0
68
46
9
13
30
1.75
3711791--3711828
18
2.1
18
100
0
76
21
15
26
36
1.93
3712392--3712418
14
1.9
14
100
0
54
74
0
0
25
0.83
3714382--3714415
17
2.0
17
94
0
59
38
17
5
38
1.74
3744034--3745144
86
12.9
87
86
5
1228
35
21
22
20
1.96
3744034--3745144
173
6.5
173
85
5
1206
35
21
22
20
1.96
3744053--3745142
44
25.3
44
68
13
392
35
21
23
19
1.96
3744830--3745144
78
3.8
80
85
8
339
38
21
22
18
1.93
3744909--3745142
43
5.3
44
72
11
167
37
21
22
17
1.94
3745670--3745752
30
2.8
30
90
0
130
16
50
6
26
1.68
3746273--3746326
21
2.7
21
72
16
60
33
3
1
61
1.25
3746271--3746342
36
2.1
35
82
10
87
30
8
1
59
1.35
3759058--3759097
20
2.0
20
85
0
53
55
20
10
15
1.68
3765885--3765924
18
2.2
19
86
4
55
27
2
10
60
1.42
3766500--3766535
17
2.1
17
100
0
72
33
5
5
55
1.46
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3766505--3766542
17
2.2
17
90
0
58
39
10
2
47
1.52
3778938--3779063
64
2.0
64
90
3
200
30
16
14
38
1.89
3779128--3779819
178
3.9
176
80
6
705
29
17
24
28
1.97
3779406--3779489
43
2.0
43
81
13
102
28
15
28
27
1.96
3779128--3779712
178
3.3
181
82
5
735
29
16
24
29
1.97
3783822--3783860
18
2.2
17
86
4
51
56
10
30
2
1.46
3785170--3785244
3
24.7
3
77
12
73
28
6
1
64
1.27
3785176--3785273
26
3.7
26
79
9
83
27
9
1
62
1.32
3785171--3785221
20
2.7
20
76
20
63
25
7
0
66
1.18
3785358--3785387
15
2.0
15
93
0
51
30
6
0
63
1.20
3786692--3786740
22
2.2
23
78
10
57
34
12
12
40
1.80
3787753--3787793
19
2.1
20
90
4
66
17
29
21
31
1.96
3795711--3795847
35
3.7
39
74
12
121
34
23
11
30
1.90
3797074--3797103
8
3.6
8
95
4
51
46
23
0
30
1.52
3797736--3797768
17
1.9
17
88
11
50
24
18
12
45
1.83
3799952--3799993
3
14.3
3
80
5
50
28
4
2
64
1.26
3800324--3800365
22
2.0
21
86
9
59
19
16
16
47
1.83
3812457--3812828
44
8.6
43
73
12
259
30
21
21
26
1.98
3812453--3812918
212
2.2
214
89
5
690
30
20
22
26
1.98
3814361--3814403
20
2.2
20
86
0
59
30
9
2
58
1.42
3820180--3820375
107
1.8
107
84
1
268
40
12
20
25
1.88
3821001--3821098
49
2.0
49
95
0
178
45
19
2
32
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3823012--3823079
35
1.9
36
93
3
120
58
10
2
27
1.45
3823057--3823090
16
2.1
16
89
10
52
61
5
0
32
1.20
3823839--3823869
9
3.4
9
90
0
53
45
3
0
51
1.17
3824788--3824830
6
7.2
6
81
0
50
48
6
0
44
1.29
3826747--3826799
25
2.2
23
83
12
63
28
11
1
58
1.43
3828506--3828539
16
2.1
16
88
0
50
20
35
11
32
1.89
3828726--3828756
15
2.0
16
93
6
55
70
0
0
29
0.87
3832964--3833181
39
5.6
39
89
0
328
37
23
27
12
1.90
3835668--3835714
24
2.0
24
82
0
58
42
0
2
55
1.12
3843462--3843810
3
116.7
3
68
15
154
63
2
6
28
1.31
3843461--3843517
25
2.3
24
82
11
71
61
1
1
35
1.17
3855522--3855662
24
5.8
24
72
8
106
17
26
21
34
1.95
3856060--3856103
19
2.3
19
100
0
88
15
13
25
45
1.83
3859024--3859134
38
2.8
39
79
5
116
22
21
25
30
1.99
3864242--3864413
46
3.7
46
91
1
247
40
13
24
21
1.90
3877696--3877747
21
2.5
21
81
6
61
26
36
21
15
1.93
3878359--3878383
3
8.3
3
100
0
50
68
0
0
32
0.90
3880174--3880260
19
4.7
19
94
5
160
36
11
14
36
1.83
3880164--3880260
36
2.6
35
77
20
108
37
11
14
37
1.82
3880255--3880298
22
2.0
21
86
4
61
34
6
15
43
1.74
3885650--3885729
28
2.8
29
82
3
108
17
3
31
47
1.65
3885915--3886001
23
4.0
22
68
15
65
17
20
25
36
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3898056--3898097
17
2.5
17
80
3
50
59
2
7
30
1.37
3904153--3904265
37
3.1
37
67
14
106
37
9
5
47
1.59
3904568--3904606
15
2.8
13
82
14
51
2
20
0
76
0.90
3910259--3910316
22
2.6
22
81
7
64
41
17
5
36
1.72
3910295--3910331
19
1.9
19
100
0
74
35
16
10
37
1.83
3910298--3910339
19
2.3
19
88
8
61
38
11
14
35
1.83
3910677--3910872
45
4.4
45
86
1
268
24
29
14
31
1.95
3910677--3910857
89
2.0
90
90
1
283
25
29
14
30
1.95
3910890--3911267
78
4.8
78
86
5
501
25
24
18
32
1.97
3910890--3911237
161
2.2
156
86
6
509
25
23
18
33
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349