genome.fa.s1.2.7.7.80.10.50.1000.305.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  305  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101983700--101983778	39	2.0	39	95	0	140	46	10	8	34	1.69
101986319--101986367	25	2.0	25	95	0	89	38	6	30	24	1.80
101989676--101989848	74	2.4	69	85	11	240	50	12	7	29	1.67
101992054--101992087	16	2.2	16	94	5	61	67	5	0	26	1.13
101992068--101992654	102	5.9	102	81	8	626	54	14	1	29	1.48
101992068--101992553	203	2.4	201	85	6	623	53	15	1	30	1.50
101992717--101992746	14	2.1	14	100	0	60	53	0	6	40	1.27
101994665--101994715	25	2.0	25	96	0	93	29	15	25	29	1.96
101998019--101998091	27	2.7	26	75	10	67	17	23	19	39	1.92
102001562--102001615	27	2.0	28	88	3	83	48	0	7	44	1.31
102005280--102005321	22	1.9	22	100	0	84	33	4	14	47	1.65
102006771--102006804	10	3.4	10	100	0	68	29	8	20	41	1.82
102014104--102014223	43	2.8	43	97	0	222	27	21	29	21	1.99
102014603--102014661	21	2.8	21	92	0	91	0	54	18	27	1.44
102015073--102015101	14	2.1	14	93	6	51	58	6	0	34	1.25
102015268--102015306	17	2.4	17	86	4	53	48	0	10	41	1.37
102020284--102020425	34	4.1	34	72	11	110	40	0	11	47	1.44
102020304--102020475	9	19.6	9	68	11	54	38	1	12	47	1.51
102020409--102020441	17	1.9	17	93	0	57	36	3	9	51	1.49
102020579--102020634	15	3.8	15	76	21	64	51	0	1	46	1.11
102020844--102021722	356	2.5	357	97	0	1661	37	11	15	35	1.84
102022170--102022544	183	2.0	183	95	0	678	42	14	15	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102024952--102024995	21	2.1	21	86	0	61	31	34	2	31	1.70
102025217--102025243	7	3.9	7	100	0	54	29	55	0	14	1.40
102025232--102025275	21	2.0	22	91	4	72	43	38	0	18	1.50
102025349--102025568	41	5.4	41	93	0	343	22	22	18	36	1.95
102031022--102031112	34	2.6	34	80	3	92	28	24	25	21	1.99
102045540--102045635	17	5.4	17	87	7	129	13	27	40	18	1.88
102045528--102045635	36	3.0	36	83	9	139	13	25	38	21	1.91
102048396--102048443	22	2.2	22	96	0	87	45	14	10	29	1.78
102051549--102051606	30	2.0	29	83	10	73	44	3	18	32	1.67
102056339--102056440	40	2.5	40	85	3	125	34	23	15	26	1.95
102068482--102068513	14	2.3	14	100	0	64	21	18	21	37	1.94
102074000--102074182	40	4.6	40	83	6	140	25	21	27	26	1.99
102074053--102074182	40	3.3	39	88	3	179	24	21	27	26	1.99
102088931--102089108	27	6.6	27	82	3	178	29	28	15	26	1.96
102097024--102097201	27	6.6	27	84	3	205	29	28	15	26	1.96
102097045--102097200	82	1.9	81	88	3	233	29	28	15	26	1.96
102105099--102105138	21	2.0	20	90	5	62	35	0	22	42	1.54
102105104--102105146	21	2.1	21	83	12	54	32	2	20	44	1.65
102115513--102115547	17	2.1	17	100	0	70	48	40	5	5	1.51
102119376--102119434	29	2.0	29	93	0	100	52	15	5	27	1.63
102119816--102119864	23	2.1	23	96	0	89	32	6	16	44	1.72
102131216--102131401	40	4.7	40	88	5	243	26	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102138933--102139170	48	5.0	48	76	7	225	27	22	25	24	2.00
102138940--102139170	95	2.4	96	77	3	218	27	21	25	25	1.99
102150003--102150338	47	7.1	47	89	2	438	33	11	29	25	1.92
102150312--102150448	46	3.0	46	89	0	202	33	8	32	25	1.87
102150631--102150741	37	3.0	37	93	0	186	21	16	31	30	1.95
102152336--102152366	15	2.1	15	93	0	53	12	25	3	58	1.50
102156686--102156712	13	2.1	13	100	0	54	33	0	29	37	1.58
102160492--102160672	84	2.2	85	79	9	217	25	27	18	27	1.98
102175019--102175083	34	1.9	34	81	6	78	33	18	21	26	1.96
102175428--102175477	22	2.3	22	92	0	82	40	24	10	26	1.86
102179529--102179562	15	2.3	15	94	0	59	38	20	14	26	1.91
102179543--102179888	112	3.1	112	89	1	489	33	23	14	28	1.94
102179543--102179888	56	6.2	55	84	8	439	33	23	14	28	1.94
102181025--102181050	13	2.0	13	100	0	52	38	23	7	30	1.83
102186237--102186595	56	6.4	56	86	5	512	32	24	14	27	1.94
102192393--102192606	43	5.0	43	79	7	204	32	25	15	25	1.96
102194574--102194645	35	2.1	35	97	0	135	38	29	8	23	1.84
102206573--102206634	12	4.8	13	74	20	51	35	0	1	62	1.05
102206573--102206632	27	2.2	26	83	13	77	33	0	1	65	1.03
102207795--102207839	22	2.0	22	100	0	90	48	4	0	46	1.22
102209775--102209882	9	12.9	8	69	24	55	59	2	4	33	1.32
102211717--102212027	127	2.4	127	95	0	550	33	19	17	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102211926--102212160	72	3.3	71	85	4	330	33	17	16	32	1.92
102212091--102212336	88	2.8	87	83	4	280	34	19	17	28	1.95
102212632--102212797	86	1.9	88	81	6	203	34	21	18	25	1.95
102212704--102213608	232	4.0	222	84	6	1083	32	21	17	29	1.96
102213105--102213608	221	2.3	218	88	3	742	31	20	16	31	1.95
102213099--102213622	146	3.6	146	94	1	877	32	20	16	30	1.95
102213626--102213799	69	2.5	69	83	1	197	31	22	14	31	1.94
102217196--102218062	70	12.2	72	85	11	1172	33	20	17	28	1.95
102217196--102218062	142	6.1	142	87	9	1204	33	20	17	28	1.95
102218066--102218237	67	2.5	69	85	3	215	33	23	14	29	1.94
102230506--102230597	3	31.3	3	69	16	50	61	3	4	30	1.31
102230550--102230614	26	2.5	26	76	14	71	60	1	0	38	1.07
102236164--102237347	177	6.7	177	82	4	1337	26	25	18	29	1.98
102236938--102237035	44	2.2	45	82	13	116	28	25	16	29	1.97
102236161--102237347	354	3.4	349	86	4	1488	26	25	18	29	1.98
102237502--102237948	64	7.0	64	93	0	741	37	13	17	31	1.89
102239039--102239089	6	8.7	6	85	12	70	27	0	0	72	0.85
102239063--102239112	15	3.2	15	88	5	64	14	4	0	82	0.82
102239063--102239134	17	4.2	17	81	12	76	13	8	0	77	0.98
102239057--102239105	23	2.1	23	88	0	71	18	2	0	79	0.83
102240575--102240634	25	2.4	25	88	0	93	58	6	15	20	1.59
102245520--102245565	23	2.0	23	95	0	83	34	23	13	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102249217--102249327	3	37.7	3	75	7	84	30	8	0	60	1.32
102249226--102249296	20	3.6	19	77	17	74	28	7	0	64	1.19
102249406--102249447	3	14.7	3	80	9	52	30	4	0	64	1.14
102249418--102249447	12	2.5	12	100	0	60	33	6	0	60	1.23
102249507--102249554	19	2.9	15	72	21	51	31	6	4	58	1.42
102252697--102252742	19	2.4	19	85	7	58	21	17	13	47	1.81
102256620--102256744	64	2.0	64	96	0	232	31	16	14	37	1.89
102256960--102257321	45	8.2	45	69	10	181	27	19	25	27	1.98
102256819--102257369	132	4.2	132	88	2	725	28	19	24	27	1.99
102257363--102257500	44	3.1	43	74	10	143	30	17	22	29	1.97
102259272--102259385	3	38.7	3	75	6	90	30	7	0	60	1.31
102259281--102259351	20	3.6	19	77	17	74	28	7	0	64	1.19
102259464--102259505	3	14.7	3	80	9	52	30	4	0	64	1.14
102259476--102259505	12	2.5	12	100	0	60	33	6	0	60	1.23
102265684--102265729	23	2.0	22	83	4	56	41	13	2	43	1.55
102265994--102266076	31	2.7	30	83	10	98	31	10	4	53	1.57
102265994--102266087	31	3.1	31	83	6	86	31	9	4	54	1.52
102266530--102266567	14	2.7	14	91	0	58	36	7	18	36	1.80
102266551--102266592	19	2.2	20	95	4	77	26	9	14	50	1.73
102268126--102268165	21	1.9	21	100	0	80	20	25	7	47	1.75
102273016--102273103	18	4.9	18	87	0	122	37	11	19	31	1.87
102285340--102285406	29	2.3	29	80	7	75	37	17	14	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
102290369--102290441	21	3.5	20	77	18	69	61	1	6	30	1.30
102290384--102290426	15	2.9	15	78	21	54	65	0	4	30	1.13
102291050--102291097	22	2.1	23	84	3	62	20	4	2	72	1.11
102291613--102291644	16	2.0	16	93	0	55	12	6	40	40	1.68
102292362--102292614	73	3.5	72	91	3	391	31	18	17	32	1.95
102292547--102292792	88	2.8	87	84	4	289	34	19	17	28	1.95
102292835--102292938	54	1.9	54	86	3	147	38	19	14	27	1.90
102293009--102293345	72	4.5	74	89	4	464	32	20	15	31	1.94
102293009--102293363	147	2.4	147	84	5	466	34	19	15	30	1.93
102293363--102293537	69	2.5	71	84	6	207	33	23	14	29	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349