Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  301  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100778208--100778243
17
2.1
18
90
10
58
52
2
0
44
1.15
100780811--100780844
15
2.2
16
89
5
52
38
0
14
47
1.45
100782606--100782650
22
2.0
22
100
0
90
44
8
8
37
1.67
100783823--100783864
20
2.1
20
86
0
57
47
0
7
45
1.30
100785907--100785950
21
2.1
21
83
8
54
27
6
9
56
1.55
100787522--100787807
68
4.1
69
79
7
281
31
25
23
19
1.98
100787521--100787858
143
2.4
137
80
7
360
31
24
22
20
1.98
100787521--100787928
211
1.9
213
79
6
461
32
24
22
21
1.98
100789731--100789766
18
2.0
18
89
10
56
61
0
5
33
1.19
100790550--100790613
25
2.6
25
87
4
87
37
6
4
51
1.48
100790565--100790615
25
2.0
25
96
0
93
39
5
7
47
1.57
100793269--100793303
16
2.1
17
94
5
63
40
11
0
48
1.39
100796617--100796693
23
3.3
23
89
3
111
50
12
2
33
1.55
100797741--100797768
14
2.0
14
100
0
56
42
7
14
35
1.73
100810190--100810232
20
2.1
21
91
4
70
23
9
0
67
1.19
100810196--100810240
20
2.2
20
88
4
63
22
11
2
64
1.36
100811821--100811858
14
2.9
13
81
11
51
52
10
18
18
1.73
100813004--100813041
20
2.0
20
94
5
69
26
10
0
63
1.27
100821949--100822039
45
2.0
45
89
4
139
37
24
14
24
1.92
100821949--100822017
21
3.0
24
66
20
65
37
24
14
23
1.92
100846143--100846193
24
2.1
24
96
0
93
27
15
7
49
1.72
100851022--100851049
13
2.2
13
100
0
56
25
14
21
39
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100860372--100860403
16
2.0
16
100
0
64
31
6
18
43
1.75
100866841--100867108
40
6.7
40
94
0
464
30
20
26
22
1.98
100868839--100868867
13
2.2
13
100
0
58
34
13
20
31
1.92
100871168--100871335
40
4.2
40
81
4
97
25
27
23
23
2.00
100871191--100871335
40
3.6
40
84
4
184
23
26
24
24
2.00
100872526--100872601
38
2.0
38
94
0
134
32
22
11
32
1.90
100878203--100878265
26
2.4
26
94
0
108
39
33
7
19
1.80
100878270--100878355
43
2.0
43
86
0
118
29
29
18
23
1.98
100878611--100878649
14
2.6
16
88
8
55
33
23
2
41
1.68
100881226--100881253
8
3.5
8
100
0
56
46
25
14
14
1.82
100881379--100881485
40
2.7
40
86
1
133
24
15
27
32
1.96
100884172--100884229
30
1.9
30
89
6
91
17
29
32
20
1.95
100903612--100903781
85
2.0
85
95
0
304
21
16
20
42
1.89
100913475--100913515
21
2.0
21
90
0
64
19
29
21
29
1.98
100917525--100917575
25
2.0
25
100
0
102
39
19
3
37
1.70
100918888--100919019
43
3.1
43
82
6
151
31
19
15
34
1.93
100918904--100919043
43
3.3
43
84
6
176
28
20
15
35
1.93
100923769--100924219
46
9.8
46
92
1
654
22
23
13
40
1.89
100924919--100925563
321
2.0
321
96
0
1182
31
20
7
40
1.80
100928073--100928122
15
3.3
14
84
15
64
0
16
0
84
0.63
100928069--100928122
5
10.8
5
81
16
51
0
16
0
83
0.65
100928073--100928118
6
7.5
6
81
13
58
0
15
0
84
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100929138--100929538
46
8.8
46
91
3
562
21
23
13
40
1.89
100932906--100932932
14
1.9
14
100
0
54
51
0
3
44
1.19
100932945--100933001
21
2.7
20
89
8
78
28
0
5
66
1.13
100933745--100933792
15
3.3
15
77
16
55
45
33
0
20
1.52
100933748--100933797
22
2.3
20
77
12
55
46
30
0
24
1.53
100933960--100934003
7
6.3
7
81
0
52
47
36
0
15
1.46
100933963--100934004
14
3.0
14
85
0
66
52
30
0
16
1.44
100934066--100934100
15
2.4
15
90
4
54
45
34
0
20
1.51
100933544--100934245
296
2.3
296
83
6
847
45
22
2
29
1.64
100934857--100934895
20
2.0
20
94
0
69
20
0
10
69
1.17
100934857--100934901
20
2.2
20
88
4
63
17
2
8
71
1.23
100937216--100937250
17
2.1
17
88
0
52
60
11
0
28
1.32
100937212--100937255
23
2.0
21
83
16
54
61
11
0
27
1.30
100938711--100938969
137
1.9
137
82
13
327
45
7
8
38
1.63
100939660--100939695
18
2.0
18
100
0
72
11
16
16
55
1.68
100939871--100939903
14
2.4
14
94
0
57
42
9
18
30
1.81
100939879--100939908
14
2.1
14
93
0
51
36
6
16
40
1.75
100940456--100940492
16
2.3
16
86
13
58
40
0
0
59
0.97
100940504--100940559
22
2.6
22
83
5
62
51
0
0
48
1.00
100945045--100945075
15
2.1
15
100
0
62
67
0
12
19
1.22
100945042--100945078
19
2.1
19
90
10
60
64
0
13
21
1.27
100950481--100950854
187
2.0
187
97
0
712
31
20
16
31
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
100950996--100951124
12
10.3
12
66
24
54
30
4
0
64
1.19
100950996--100951157
17
9.9
15
73
20
71
31
3
1
62
1.23
100950994--100951088
26
3.3
30
77
20
96
30
5
0
64
1.16
100951045--100951123
19
3.7
21
70
20
56
31
3
1
63
1.20
100950996--100951101
3
34.3
3
70
22
69
31
4
0
64
1.14
100951061--100951162
17
6.1
17
76
18
83
33
0
3
61
1.21
100951076--100951157
32
2.6
30
81
14
87
32
1
3
62
1.21
100951111--100951218
31
3.4
32
78
11
114
45
0
4
50
1.22
100958444--100958537
27
3.5
27
77
0
107
37
12
22
27
1.91
100958428--100958537
54
2.0
54
96
0
202
39
13
21
25
1.90
100958658--100958725
27
2.5
27
88
4
93
35
14
20
29
1.93
100964797--100964948
42
3.6
42
83
6
157
28
16
26
28
1.97
100970225--100970249
12
2.1
12
100
0
50
32
0
16
52
1.44
100973683--100973745
31
2.0
31
100
0
126
33
15
9
41
1.80
100976990--100977702
289
2.5
288
89
1
1063
29
20
18
31
1.96
100977435--100977938
205
2.5
198
89
3
749
28
21
18
31
1.96
100990332--100990369
19
2.0
20
89
5
60
73
0
5
21
1.02
100996029--100996183
43
3.6
43
84
1
213
27
26
20
25
1.99
100996017--100996183
85
2.0
85
89
0
253
29
24
20
25
1.99
100996163--100996202
21
1.9
21
94
0
71
35
22
20
22
1.96
100996243--100996308
22
3.0
22
73
20
66
39
1
3
56
1.24
100996560--100996593
17
1.9
18
94
5
61
23
29
11
35
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101003816--101003985
37
4.7
35
67
20
100
43
1
6
48
1.39
101003874--101003919
16
2.9
16
78
12
51
45
0
2
52
1.13
101003809--101004024
107
2.0
109
96
1
400
43
1
5
49
1.36
101003981--101004022
15
2.7
16
82
14
52
45
0
2
52
1.13
101003972--101004013
15
2.9
15
82
10
52
47
0
0
52
1.00
101003957--101004195
75
3.1
75
62
16
171
46
3
3
46
1.37
101003956--101004272
157
2.0
157
95
0
571
47
4
3
44
1.41
101004395--101004462
16
4.2
16
96
0
127
38
38
0
23
1.55
101004547--101004682
74
1.9
71
82
10
168
29
17
10
42
1.82
101005084--101005132
22
2.3
21
82
10
55
32
42
2
22
1.65
101005188--101005269
21
3.7
22
76
13
96
42
25
1
30
1.63
101005172--101005262
46
2.0
46
93
4
157
41
25
2
30
1.67
101005285--101005334
25
2.0
25
100
0
100
44
8
4
44
1.52
101005470--101005656
41
4.6
41
92
1
313
16
24
26
33
1.96
101005470--101005657
81
2.3
82
95
0
333
16
23
26
33
1.96
101019791--101019854
26
2.4
26
84
5
74
32
25
12
29
1.92
101019959--101020099
27
5.2
26
86
6
192
17
24
24
34
1.95
101019959--101020099
54
2.6
53
94
2
237
17
24
24
34
1.95
101033457--101033487
16
1.9
16
93
0
53
48
0
6
45
1.28
101043853--101044072
40
5.6
40
83
4
259
25
26
23
25
2.00
101052631--101052847
46
4.7
45
72
7
150
23
29
17
28
1.97
101059654--101059826
46
3.7
46
80
13
219
21
21
28
28
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
101059651--101059821
93
1.8
93
96
0
315
21
21
29
28
1.98
101060051--101060088
19
2.0
20
85
15
53
36
0
23
39
1.55
101063589--101063774
92
2.0
92
97
0
354
38
3
18
39
1.69
101065482--101065587
28
3.7
27
71
23
74
26
28
16
28
1.97
101065501--101065573
32
2.2
34
81
16
91
31
24
13
30
1.94
101065616--101065661
20
2.3
20
82
14
60
28
28
17
26
1.98
101067143--101067266
60
2.1
60
98
0
239
20
26
8
44
1.80
101071486--101071636
39
3.7
39
74
14
135
41
7
6
44
1.60
101082480--101082659
40
4.6
40
83
4
213
25
23
26
24
2.00
101082480--101082659
80
2.3
79
87
1
245
25
23
26
24
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349