Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  141  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45271561--45271606
24
2.0
21
84
12
56
60
0
0
39
0.97
45271668--45271732
24
2.6
24
80
11
69
64
4
3
27
1.28
45273290--45273336
21
2.2
21
88
0
67
25
25
12
36
1.92
45273587--45273616
14
2.1
14
93
0
51
66
6
10
16
1.41
45273459--45273755
85
3.4
85
90
2
425
35
21
15
27
1.93
45273681--45273834
79
1.9
79
92
0
254
31
20
16
31
1.94
45273459--45273852
164
2.4
165
86
7
528
36
20
15
28
1.93
45282142--45282186
22
2.0
22
91
0
72
48
4
17
28
1.66
45286204--45286247
23
1.9
23
85
0
61
56
4
9
29
1.50
45286303--45286421
11
10.1
12
72
23
67
57
7
1
32
1.36
45286297--45286421
22
5.9
22
74
18
104
57
7
1
33
1.36
45286304--45286417
24
4.8
23
76
14
97
57
7
1
33
1.36
45286318--45286376
13
4.6
13
76
4
57
61
3
1
33
1.23
45286343--45286421
11
7.0
11
81
5
86
54
8
2
34
1.45
45286391--45286422
6
5.7
6
85
14
50
53
15
0
31
1.43
45286461--45286486
11
2.4
11
100
0
52
57
15
0
26
1.38
45289984--45290027
24
1.9
22
86
9
61
47
0
22
29
1.51
45290222--45290293
31
2.4
30
73
22
71
36
0
2
61
1.11
45290273--45290297
8
3.1
8
100
0
50
24
0
0
76
0.80
45292469--45292737
43
6.3
42
73
6
193
31
23
15
28
1.95
45292474--45292737
85
3.1
85
77
8
259
31
23
15
29
1.95
45293063--45293112
21
2.4
21
93
0
82
2
48
16
34
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45293550--45293578
13
2.1
14
93
6
51
55
10
0
34
1.34
45298574--45298735
9
17.8
9
73
15
102
37
0
17
45
1.49
45298576--45298735
56
2.8
56
91
4
239
36
0
18
45
1.50
45298888--45298923
18
2.0
18
100
0
72
27
16
5
50
1.68
45299142--45299179
10
3.9
10
79
6
51
55
0
2
42
1.14
45299142--45299182
19
2.2
19
86
0
55
58
0
2
39
1.11
45299169--45299212
22
2.0
22
82
8
54
61
2
0
36
1.09
45299950--45299997
25
1.9
25
82
0
60
29
16
43
10
1.81
45302446--45302485
21
1.9
21
90
10
64
52
30
0
17
1.45
45302441--45302548
28
3.8
29
75
10
107
51
28
0
19
1.47
45316642--45316821
50
3.7
48
76
9
163
24
27
20
27
1.99
45321470--45321644
46
3.8
45
76
12
167
28
28
20
22
1.98
45321478--45321648
93
1.8
93
88
2
263
28
28
21
22
1.99
45321473--45321664
46
4.2
46
73
14
153
28
28
20
22
1.99
45329000--45329143
46
3.1
44
72
15
114
29
29
18
21
1.97
45334370--45334492
46
2.6
45
88
6
174
20
30
21
27
1.98
45340062--45340286
82
2.8
80
85
4
274
23
20
28
27
1.99
45340062--45340286
40
5.6
40
86
6
260
23
20
28
27
1.99
45340140--45340321
79
2.3
80
82
1
215
25
20
28
25
1.99
45347903--45348124
40
5.6
40
86
4
247
24
19
28
26
1.99
45347903--45348124
119
1.9
119
81
7
272
24
19
28
26
1.99
45347952--45348159
79
2.6
79
83
3
251
25
19
29
25
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45347903--45348159
119
2.2
119
79
6
263
25
19
28
25
1.99
45350729--45350992
45
5.9
45
75
8
141
39
15
24
20
1.91
45351098--45351122
12
2.1
12
100
0
50
84
0
0
16
0.63
45359762--45359850
43
2.1
43
82
0
106
23
15
28
32
1.95
45364523--45364583
27
2.3
27
100
0
122
44
21
0
34
1.53
45364530--45364595
27
2.3
30
89
10
102
42
21
0
36
1.53
45376441--45376529
45
2.0
45
97
0
169
48
5
3
42
1.43
45376658--45376709
23
2.3
23
83
3
61
61
11
9
17
1.55
45381070--45381105
12
3.0
12
91
0
54
50
8
0
41
1.33
45382014--45382072
18
3.5
18
71
17
63
54
1
1
42
1.20
45382585--45382621
18
2.1
18
90
10
58
64
0
0
35
0.94
45382587--45382627
18
2.3
19
83
8
50
65
4
0
29
1.13
45383123--45383159
14
2.8
14
80
12
51
62
0
0
37
0.96
45384089--45384166
18
4.3
18
72
18
63
64
1
1
33
1.10
45384091--45384166
10
8.4
9
76
15
50
64
1
1
32
1.10
45385028--45385066
19
2.2
18
86
9
53
30
7
2
58
1.39
45385179--45385221
20
2.0
22
86
8
63
27
9
0
62
1.25
45387878--45387918
19
2.2
19
86
0
55
31
2
26
39
1.70
45388547--45388631
35
2.4
35
94
0
143
23
9
27
40
1.85
45389531--45389645
54
2.1
54
88
3
169
23
20
32
23
1.98
45391003--45391083
30
2.7
30
98
0
153
29
13
27
29
1.94
45391430--45391743
46
6.6
47
76
10
268
27
19
30
22
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45391430--45391743
94
3.3
93
81
13
299
27
19
30
22
1.98
45397129--45398928
777
2.3
774
90
2
2858
32
12
18
36
1.89
45399235--45399268
13
2.5
13
90
9
50
35
2
14
47
1.60
45400571--45400775
40
5.2
40
93
1
333
22
22
27
27
1.99
45404615--45404824
39
5.3
39
88
5
246
32
28
20
18
1.96
45404615--45404824
77
2.7
79
84
5
248
32
28
20
18
1.96
45406085--45406162
39
2.0
39
97
0
147
38
29
7
24
1.83
45406852--45414183
766
9.5
774
87
3
9776
31
12
18
37
1.88
45409231--45409262
12
2.7
12
100
0
64
9
0
28
62
1.26
45410461--45414183
775
4.8
775
87
3
5099
31
12
18
37
1.88
45415923--45415955
16
2.1
16
94
0
57
66
3
0
30
1.06
45416064--45416119
21
2.6
22
78
13
55
53
5
5
35
1.47
45416164--45416203
18
2.2
19
86
4
55
60
5
0
35
1.19
45416163--45416233
16
4.7
15
73
18
51
59
7
2
30
1.39
45416164--45416209
13
3.2
14
82
11
58
58
6
0
34
1.24
45416163--45416229
28
2.3
28
80
16
75
58
7
2
31
1.41
45416303--45416346
19
2.4
19
85
7
56
59
2
2
36
1.23
45416438--45416503
9
7.7
9
72
14
50
57
4
0
37
1.19
45416438--45416503
11
6.4
11
71
11
50
57
4
0
37
1.19
45416483--45416625
35
4.2
34
71
16
102
57
5
3
33
1.39
45416709--45416748
3
13.3
3
100
0
80
67
0
0
32
0.91
45417278--45417319
14
3.0
14
83
13
59
83
0
16
0
0.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45418152--45418251
44
2.3
44
87
0
137
29
25
16
30
1.96
45418152--45418263
44
2.5
44
85
0
134
27
26
16
29
1.97
45418424--45418703
73
3.7
77
80
10
233
34
20
15
29
1.93
45418472--45418703
73
3.1
75
84
9
287
33
21
16
28
1.95
45418681--45418710
15
2.0
15
93
0
51
56
10
13
20
1.65
45418608--45418773
90
1.9
88
89
5
262
35
21
16
26
1.94
45418773--45418944
90
1.9
87
86
5
238
37
20
15
27
1.92
45418860--45419103
73
3.3
73
85
2
310
34
20
16
27
1.95
45418534--45419029
165
3.0
161
83
7
635
35
20
16
27
1.94
45419010--45419192
87
2.1
87
91
5
300
36
18
16
28
1.93
45431663--45431707
21
2.2
20
84
4
54
53
2
4
40
1.33
45431752--45431791
18
2.2
19
86
4
55
60
5
0
35
1.19
45431751--45431821
16
4.7
15
73
18
51
59
7
2
30
1.39
45431752--45431797
13
3.2
14
82
11
58
58
6
0
34
1.24
45431751--45431817
28
2.3
28
80
16
75
58
7
2
31
1.41
45431891--45431936
19
2.5
19
86
6
60
58
0
2
39
1.10
45432301--45432334
3
11.3
3
93
0
59
67
2
0
29
1.05
45432962--45432993
15
2.1
15
94
0
55
84
0
15
0
0.63
45433520--45433553
17
2.0
18
88
11
54
5
0
50
44
1.26
45434304--45434350
23
2.0
23
95
0
85
46
6
4
42
1.48
45442221--45442259
16
2.5
16
87
4
53
23
0
0
76
0.78
45442225--45442268
20
2.2
20
84
8
54
25
2
0
72
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45447601--45447649
15
3.3
15
73
21
57
24
20
0
55
1.44
45448802--45448838
18
2.1
18
94
0
65
45
10
13
29
1.77
45449503--45449560
16
3.6
16
90
0
89
31
29
0
39
1.57
45449494--45449560
32
2.1
32
88
0
98
32
26
0
40
1.57
45453083--45453177
27
3.5
27
80
5
102
42
22
7
28
1.80
45453182--45453485
27
11.3
27
90
0
428
29
21
7
40
1.82
45453180--45453485
81
3.8
81
91
0
477
30
21
7
40
1.81
45453489--45453631
27
5.3
27
83
5
128
41
20
7
29
1.80
45453479--45453655
81
2.2
81
84
2
230
42
18
8
31
1.80
45453506--45453687
27
6.8
27
83
4
181
40
19
9
30
1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349