Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  315  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105127208--105127363
48
3.2
48
80
3
170
31
1
21
45
1.60
105127555--105128281
241
3.0
241
96
0
1330
33
14
17
34
1.91
105133197--105133253
30
1.9
30
85
7
80
57
14
17
10
1.64
105133200--105133256
15
3.8
15
79
4
62
56
17
15
10
1.67
105136259--105136439
49
3.7
49
85
3
211
28
27
18
25
1.98
105141948--105142158
46
4.6
46
88
3
266
43
13
23
19
1.86
105141949--105142020
21
3.2
21
67
27
58
41
11
22
25
1.86
105141958--105142173
90
2.4
92
85
1
283
42
15
22
19
1.88
105142961--105142996
18
2.0
18
94
0
63
27
19
22
30
1.98
105148336--105148556
50
4.6
48
76
8
186
25
19
31
23
1.98
105154196--105154452
6
42.8
6
99
0
505
16
0
15
67
1.24
105157901--105158076
46
3.8
45
76
12
187
22
20
28
28
1.98
105157897--105158068
93
1.8
93
91
2
283
22
20
29
27
1.99
105171368--105171488
28
4.3
29
77
8
115
24
14
32
28
1.94
105180198--105180323
29
4.4
29
77
14
127
25
13
34
26
1.93
105180177--105180299
29
4.3
29
80
9
137
26
11
34
28
1.91
105181993--105182095
46
2.2
48
87
3
147
34
14
24
26
1.94
105182960--105182998
5
7.4
5
83
11
51
15
2
0
82
0.79
105182960--105182998
16
2.4
16
91
8
62
15
2
0
82
0.79
105187395--105187434
16
2.4
17
88
12
57
17
2
0
80
0.83
105199634--105199688
25
2.2
26
90
6
87
36
3
7
52
1.47
105201795--105201827
13
2.8
12
90
9
50
36
0
12
51
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105201854--105201893
10
4.0
10
81
12
55
22
7
2
67
1.28
105208608--105208658
25
2.0
25
100
0
102
31
7
15
45
1.75
105209548--105209601
19
2.9
18
71
15
56
20
7
0
72
1.08
105211105--105211137
13
2.8
12
90
9
50
33
3
12
51
1.54
105211165--105211203
10
3.9
10
80
12
53
20
7
2
69
1.26
105212809--105212872
24
2.7
24
85
0
92
48
6
6
39
1.54
105216622--105216800
41
4.4
41
89
2
236
35
24
20
20
1.96
105216965--105217016
14
3.7
14
81
0
59
26
0
25
48
1.52
105217069--105217168
7
14.0
7
73
14
71
20
0
42
38
1.52
105220501--105220591
29
3.1
29
98
1
173
29
8
13
48
1.72
105222263--105222344
43
1.9
43
94
0
146
24
19
31
24
1.98
105230941--105230977
12
3.1
13
81
18
53
62
0
0
37
0.96
105231362--105231404
22
2.0
22
90
9
70
30
2
0
67
1.03
105249020--105249076
28
2.0
28
100
0
114
14
14
28
43
1.83
105251355--105251478
45
2.7
47
81
15
152
28
29
20
21
1.98
105251893--105251951
29
2.0
29
90
0
91
28
25
8
37
1.85
105257142--105257167
2
13.0
2
100
0
52
50
50
0
0
1.00
105257842--105257887
21
2.3
21
88
7
69
0
26
2
71
0.97
105257853--105257894
15
2.8
15
75
13
50
0
21
4
73
1.01
105257881--105257927
24
2.0
24
83
8
60
4
17
4
74
1.14
105264548--105264687
60
2.3
60
85
8
178
27
23
19
30
1.98
105264677--105264732
20
2.8
20
83
2
69
33
28
16
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105267827--105267913
21
4.1
21
77
11
88
25
27
27
19
1.99
105267834--105267924
42
2.2
42
87
0
128
25
25
29
19
1.99
105271641--105271725
28
3.0
28
84
3
107
27
29
14
29
1.95
105271937--105271971
16
2.2
16
89
0
52
11
22
17
48
1.79
105286631--105286668
17
2.2
18
85
4
51
10
23
2
63
1.39
105289381--105289428
24
2.0
24
100
0
96
25
29
8
37
1.85
105303205--105303316
25
4.5
25
74
8
86
19
22
20
37
1.94
105309731--105309756
3
8.7
3
100
0
52
65
0
34
0
0.93
105309806--105309846
14
2.7
15
88
7
57
56
2
0
41
1.13
105309866--105309921
28
2.0
28
100
0
112
35
10
14
39
1.81
105310373--105310417
14
3.1
14
82
14
56
68
8
2
20
1.27
105310378--105310417
16
2.8
13
82
17
53
70
10
2
17
1.27
105316411--105316450
20
2.0
21
90
5
64
47
0
7
45
1.31
105318153--105318351
100
2.0
100
91
1
319
36
4
8
50
1.52
105319137--105319206
31
2.3
31
89
0
104
44
14
11
30
1.80
105321961--105321999
13
2.9
13
88
11
53
30
15
12
41
1.85
105331115--105331177
28
2.2
28
88
0
90
30
6
31
31
1.83
105336535--105336597
28
2.2
28
85
0
81
31
6
30
31
1.83
105338191--105338221
14
2.2
14
94
0
53
61
12
6
19
1.53
105338214--105338260
22
2.2
21
84
3
58
70
6
4
19
1.26
105340880--105340960
40
2.0
40
97
0
153
27
27
12
33
1.92
105345570--105345675
33
3.2
32
69
12
79
62
5
4
27
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105347993--105348036
18
2.4
18
85
10
63
38
2
2
56
1.24
105348520--105348568
25
2.0
25
88
8
73
46
6
0
46
1.27
105348921--105348981
18
3.3
18
72
16
54
75
1
0
22
0.89
105356562--105356611
18
2.7
19
78
12
59
62
0
2
36
1.07
105358631--105358892
129
2.0
130
90
0
418
28
11
19
41
1.85
105359314--105359344
15
2.1
15
93
0
53
35
12
9
41
1.76
105362237--105362269
15
2.2
15
94
0
57
27
9
12
51
1.69
105366273--105366310
16
2.4
16
86
8
51
57
0
10
31
1.32
105369850--105369912
27
2.5
26
82
12
71
31
25
0
42
1.55
105369929--105369967
20
2.1
19
90
9
62
38
20
0
41
1.53
105370256--105370341
43
2.0
43
95
4
156
36
24
0
39
1.56
105370717--105370784
5
13.4
5
77
13
68
60
0
0
39
0.97
105370722--105370785
13
5.1
13
79
11
71
62
0
0
37
0.95
105370718--105370789
37
1.9
37
88
5
110
62
0
0
37
0.95
105375161--105375309
43
3.5
43
79
7
151
28
16
23
31
1.96
105375204--105375325
42
2.9
43
76
11
126
30
16
23
29
1.96
105378622--105378660
20
2.1
19
90
9
62
38
20
0
41
1.53
105379373--105379449
5
15.0
5
75
14
68
58
2
1
37
1.20
105379381--105379447
11
6.0
11
77
7
64
59
2
1
35
1.22
105379379--105379444
29
2.3
29
84
5
80
59
3
1
36
1.22
105379379--105379449
16
4.6
16
76
15
69
59
2
1
36
1.21
105386766--105386822
22
2.6
22
80
0
78
38
15
10
35
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105390728--105390782
26
2.1
26
100
0
110
47
7
3
41
1.49
105391982--105392053
27
2.8
26
78
14
85
27
8
26
37
1.85
105391982--105392053
13
5.5
13
76
12
76
27
8
26
37
1.85
105394068--105394306
72
3.3
72
88
1
365
54
15
6
23
1.64
105402779--105402815
5
7.4
5
88
11
58
81
0
2
16
0.81
105403243--105403291
21
2.3
22
85
7
73
44
14
4
36
1.64
105404089--105404183
35
2.7
35
77
11
95
42
1
4
52
1.27
105404378--105404432
21
2.6
21
88
0
83
29
30
9
30
1.88
105405094--105405146
21
2.5
21
87
6
72
30
37
9
22
1.86
105405158--105405246
44
2.0
44
88
0
133
34
34
12
17
1.88
105405449--105405522
18
4.1
18
72
11
62
40
1
1
56
1.16
105406256--105406306
20
2.6
21
79
14
65
54
0
0
45
0.99
105407735--105407784
22
2.3
22
79
6
57
60
8
8
24
1.52
105414635--105414742
21
5.0
22
79
5
96
37
23
22
17
1.94
105415110--105415167
15
3.8
15
88
2
89
51
12
0
36
1.39
105416439--105416470
5
6.4
5
100
0
64
59
0
0
40
0.97
105418910--105418970
18
3.3
18
74
17
61
50
11
1
36
1.48
105419265--105419328
23
2.9
21
80
13
58
39
0
6
54
1.26
105423797--105423908
51
2.2
51
87
3
154
27
18
13
40
1.88
105425547--105425606
29
2.1
29
100
0
120
41
6
0
51
1.28
105427977--105428005
15
2.0
15
93
6
51
27
0
0
72
0.85
105432088--105432476
88
4.5
88
86
3
448
20
22
20
36
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105432281--105432426
44
3.3
43
63
11
98
19
22
21
35
1.96
105438884--105438932
25
2.0
24
84
4
62
18
4
24
53
1.62
105439055--105439092
13
2.9
13
88
7
51
60
2
0
36
1.11
105439979--105440055
38
2.0
38
100
0
154
25
10
18
45
1.81
105439979--105440036
19
3.1
19
70
9
64
25
10
18
44
1.82
105439995--105440055
19
3.2
19
72
9
70
24
9
18
47
1.78
105440134--105440163
7
4.1
7
95
4
51
60
0
0
40
0.97
105440074--105440154
19
4.2
19
70
20
60
58
1
0
40
1.06
105442241--105442287
17
2.7
18
81
15
62
57
2
2
38
1.23
105442592--105442646
23
2.3
25
78
12
62
40
0
5
54
1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349