Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  327  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108718761--108718829
35
1.9
37
85
5
97
42
0
2
55
1.15
108719163--108719192
11
2.7
11
100
0
60
43
0
16
40
1.48
108724673--108724726
28
1.9
28
92
0
90
12
16
20
50
1.78
108724812--108724865
27
2.0
27
100
0
108
22
7
25
44
1.79
108724815--108724872
27
2.1
27
93
0
98
27
6
25
39
1.81
108726988--108727046
26
2.3
26
87
0
82
20
5
18
55
1.61
108726983--108727046
13
5.0
13
84
1
67
18
6
18
56
1.62
108727029--108727164
9
14.7
9
72
17
91
29
2
12
55
1.48
108726998--108727180
13
15.0
13
65
21
67
27
2
14
55
1.52
108727051--108727110
20
3.0
20
74
13
59
30
5
11
53
1.58
108727029--108727164
37
3.7
36
81
10
132
29
2
12
55
1.48
108727030--108727107
38
2.0
38
90
7
120
29
3
14
52
1.59
108727305--108727401
9
10.4
9
73
14
63
25
3
16
54
1.56
108727305--108727440
37
3.7
34
80
16
146
25
4
16
54
1.60
108727360--108727422
19
3.4
19
71
20
60
25
4
14
55
1.58
108727582--108727678
37
2.6
37
90
0
158
27
2
13
56
1.48
108727582--108727692
9
11.8
9
69
15
55
27
2
13
56
1.50
108727015--108727677
276
2.4
273
88
4
970
25
6
18
49
1.71
108727663--108727872
20
10.3
19
83
14
155
21
1
20
55
1.51
108727742--108727868
4
30.8
4
98
1
218
23
0
24
51
1.48
108740823--108740860
6
6.2
6
85
14
51
84
0
0
15
0.63
108740822--108740852
7
4.6
7
92
8
55
87
0
0
12
0.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108740823--108740858
13
2.8
13
95
4
65
86
0
0
13
0.58
108747254--108747481
46
5.0
46
87
1
260
39
14
23
21
1.90
108752712--108752774
31
2.0
31
84
0
81
38
4
7
49
1.53
108753485--108753532
8
6.1
8
97
2
89
75
0
0
25
0.81
108754065--108754104
21
1.9
21
85
10
55
62
0
12
25
1.30
108755479--108755531
15
3.3
16
76
7
54
33
0
0
66
0.92
108757573--108757605
12
2.5
13
90
9
50
45
0
0
54
0.99
108757705--108757760
18
2.9
19
73
26
55
46
0
1
51
1.11
108760170--108760226
30
1.9
30
85
7
80
29
3
12
54
1.54
108760781--108760861
22
3.6
22
70
9
74
43
13
16
27
1.85
108760783--108760905
45
2.7
46
90
6
189
42
12
16
29
1.84
108760799--108760870
22
3.2
22
67
11
65
43
9
16
30
1.80
108760791--108760893
24
4.5
23
67
10
68
43
13
15
27
1.84
108769821--108769864
20
2.1
20
83
8
52
52
22
13
11
1.72
108772950--108772985
17
2.1
17
90
10
56
38
11
0
50
1.38
108773465--108773506
21
2.0
21
95
0
75
28
7
19
45
1.76
108802006--108802051
22
2.0
23
87
4
67
41
4
2
52
1.33
108804402--108804443
5
8.4
5
100
0
84
40
0
0
59
0.97
108804502--108804532
5
6.2
5
92
0
53
83
0
16
0
0.64
108805289--108805360
37
1.9
37
81
10
85
38
2
18
40
1.65
108805560--108805661
38
2.6
39
73
7
100
22
19
28
29
1.98
108811066--108811107
12
3.5
12
81
9
50
50
0
2
47
1.14
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108812600--108812653
26
2.0
27
86
10
76
50
7
1
40
1.41
108813324--108813437
30
3.7
30
81
7
104
42
2
1
52
1.25
108813385--108813466
31
2.9
28
74
16
78
42
1
1
54
1.15
108813324--108813466
60
2.4
58
80
13
139
43
2
1
52
1.24
108813357--108813464
30
3.6
28
77
14
94
43
1
0
53
1.17
108819529--108819580
27
1.9
27
100
0
104
26
23
26
23
2.00
108821307--108821371
29
2.2
28
75
5
67
47
3
3
46
1.33
108821332--108821369
13
2.7
15
84
12
53
50
0
5
44
1.24
108821562--108821615
20
2.8
20
80
11
67
64
3
3
27
1.27
108822159--108822216
18
3.3
17
79
11
55
32
1
3
62
1.22
108822192--108822231
19
2.1
19
85
4
53
30
0
2
67
1.04
108822522--108822563
17
2.6
17
77
7
52
45
16
2
35
1.61
108827767--108827840
36
2.0
36
85
12
98
21
5
4
68
1.26
108827794--108827841
18
2.7
17
75
9
51
27
4
2
66
1.21
108827843--108827916
21
3.4
21
76
10
60
41
0
2
55
1.14
108827830--108827918
23
4.0
23
73
12
78
41
0
2
56
1.12
108828178--108828247
28
2.5
29
73
15
76
54
0
1
44
1.09
108828211--108828252
21
2.0
21
90
4
68
45
0
0
54
0.99
108828398--108828468
27
2.6
26
77
6
70
47
4
2
45
1.36
108828398--108828459
27
2.3
27
80
5
72
50
4
1
43
1.33
108828466--108828530
34
1.9
34
83
0
85
15
7
4
72
1.24
108828588--108828631
21
2.1
21
84
16
56
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108828733--108828771
18
2.2
18
90
0
60
61
0
0
38
0.96
108833491--108834356
120
7.2
120
96
1
1522
44
2
5
48
1.38
108833945--108833979
18
2.0
17
88
5
52
45
0
0
54
0.99
108834185--108834219
18
2.0
17
88
5
52
45
0
0
54
0.99
108834305--108834339
18
2.0
17
88
5
52
45
0
0
54
0.99
108834504--108834594
45
2.0
45
85
2
121
37
28
6
27
1.82
108834575--108834643
16
4.2
16
89
10
113
39
37
0
23
1.55
108834575--108834643
33
2.1
32
92
7
113
39
37
0
23
1.55
108838867--108838908
14
3.3
13
78
15
52
35
0
2
61
1.09
108838895--108838961
31
2.0
34
86
11
95
43
1
0
55
1.09
108838977--108839037
29
2.1
28
90
3
95
40
0
3
55
1.16
108838931--108839029
10
10.4
9
77
12
65
44
1
3
51
1.23
108839762--108839831
10
6.9
10
72
15
54
51
1
0
47
1.09
108839777--108839819
23
1.9
22
90
4
68
55
2
0
41
1.12
108839762--108839829
22
3.3
20
78
13
75
52
1
0
45
1.09
108839827--108839880
18
3.0
18
78
5
56
62
1
3
31
1.23
108839921--108839960
17
2.4
16
87
4
62
80
0
7
12
0.91
108839921--108839959
8
4.8
8
90
6
60
79
0
7
12
0.93
108844672--108844801
65
2.0
65
100
0
260
33
15
13
36
1.87
108849071--108849164
49
1.9
50
86
4
138
38
19
10
31
1.86
108850621--108850647
11
2.5
11
100
0
54
0
7
7
85
0.75
108851392--108851473
14
5.9
14
76
20
59
32
3
1
62
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108851378--108851516
3
48.3
3
67
21
75
30
5
0
64
1.20
108851399--108851508
38
3.0
39
76
18
110
30
3
0
64
1.17
108851399--108851473
26
3.0
23
81
11
71
33
2
1
62
1.17
108851497--108851547
26
1.9
27
88
4
77
29
7
0
62
1.23
108851613--108851648
17
2.1
17
94
5
63
13
5
5
75
1.17
108851870--108851989
50
2.5
48
78
16
124
32
8
0
58
1.34
108852028--108852058
11
2.7
11
95
5
53
38
0
6
54
1.26
108856874--108856938
32
2.0
32
96
0
121
26
21
16
35
1.95
108863988--108864017
11
2.7
11
100
0
60
63
0
20
16
1.31
108865112--108865196
38
2.4
35
79
12
93
65
5
3
24
1.31
108865117--108865222
36
2.9
34
78
10
95
63
6
4
25
1.39
108869848--108869887
3
13.0
3
94
5
71
67
0
0
32
0.91
108870289--108870336
3
16.0
3
82
8
62
64
2
0
33
1.05
108870432--108870663
3
75.7
3
72
16
104
63
2
7
26
1.33
108876499--108876536
12
3.2
12
88
7
60
36
0
0
63
0.95
108876502--108876537
11
3.2
11
92
4
54
38
0
0
61
0.96
108876651--108876715
30
2.2
30
94
0
112
60
15
1
23
1.44
108876745--108876787
22
2.0
22
85
0
59
55
9
11
23
1.64
108881729--108881784
20
2.7
20
83
5
67
30
3
7
58
1.42
108886239--108886282
22
2.0
22
86
13
63
52
6
4
36
1.49
108886747--108886807
19
3.3
19
93
6
108
37
8
16
37
1.78
108893940--108894046
26
4.2
26
91
2
180
32
7
24
35
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108893940--108894046
51
2.1
52
94
1
189
32
7
24
35
1.83
108897627--108898372
205
3.7
205
94
1
1279
31
18
21
28
1.97
108899000--108899107
19
5.8
19
78
15
111
37
7
16
38
1.77
108899050--108899075
5
5.2
5
100
0
52
38
0
23
38
1.55
108899000--108899093
36
2.6
37
79
16
108
38
7
17
37
1.77
108902705--108902773
24
3.0
22
75
20
68
36
4
1
57
1.27
108902900--108902961
14
4.1
14
80
12
61
37
4
1
56
1.30
108902899--108902946
14
3.4
14
85
5
62
37
6
0
56
1.25
108905075--108905123
18
2.7
18
87
6
73
59
6
0
34
1.22
108906865--108906898
16
2.1
17
88
5
52
41
0
0
58
0.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349