Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  280  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93452124--93452360
27
8.8
27
90
0
332
37
7
24
30
1.82
93452124--93452353
107
2.1
108
91
0
372
37
7
23
30
1.83
93459759--93459836
31
2.5
31
93
0
129
39
0
16
43
1.48
93468331--93468364
17
1.9
18
88
5
52
35
5
5
52
1.50
93485363--93485392
15
1.9
16
93
6
53
26
6
36
30
1.82
93498741--93498790
24
2.1
24
96
0
91
40
22
22
16
1.91
93504151--93504420
40
6.8
40
88
4
368
25
20
28
24
1.99
93504151--93504420
121
2.3
119
89
3
409
25
20
28
24
1.99
93512212--93512444
40
5.8
41
88
5
296
23
21
29
25
1.99
93512212--93512444
82
2.9
80
87
3
299
23
21
29
25
1.99
93512212--93512444
122
1.9
120
86
1
331
23
21
29
25
1.99
93516260--93516285
12
2.2
12
100
0
52
23
0
7
69
1.14
93520273--93520302
9
3.3
9
90
0
51
56
6
0
36
1.26
93524306--93524354
25
1.9
26
83
4
64
48
2
0
48
1.12
93524328--93524405
34
2.3
34
95
0
138
52
0
3
43
1.19
93555911--93555948
20
1.9
20
88
0
58
39
2
28
28
1.70
93563216--93563245
5
5.8
5
96
4
51
3
60
36
0
1.14
93563311--93563362
22
2.4
22
84
9
63
71
9
0
19
1.13
93563315--93563362
21
2.3
20
82
10
53
72
10
0
16
1.10
93569085--93569270
91
2.0
91
95
0
336
33
6
13
46
1.69
93570851--93570875
10
2.5
10
100
0
50
40
12
20
28
1.87
93571034--93571062
13
2.2
13
100
0
58
13
13
0
72
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93573144--93573226
43
1.9
43
82
0
103
28
18
15
37
1.91
93587557--93587653
42
2.3
42
89
3
142
34
22
17
25
1.96
93587836--93587905
33
2.1
33
100
0
140
44
7
2
45
1.46
93592036--93592075
14
2.9
14
88
0
53
40
7
20
32
1.80
93592067--93592104
19
2.0
19
89
0
58
28
2
13
55
1.51
93596211--93596528
47
6.7
48
75
14
261
24
30
19
26
1.98
93596219--93596528
141
2.2
140
82
7
360
24
30
19
26
1.98
93596211--93596525
94
3.3
94
78
11
342
24
30
19
26
1.98
93597247--93597271
12
2.1
12
100
0
50
60
16
8
16
1.58
93599066--93599108
20
2.2
20
82
0
50
44
2
4
48
1.36
93601302--93601470
91
1.8
93
93
2
297
28
28
20
21
1.98
93601297--93601467
46
3.7
45
77
14
188
29
28
20
22
1.98
93601887--93601946
30
2.0
30
90
0
93
30
25
8
36
1.85
93604337--93604507
93
1.8
93
96
0
315
28
28
21
21
1.99
93604332--93604504
46
3.7
46
78
13
210
28
27
21
21
1.99
93604919--93604978
30
2.0
30
90
0
93
30
25
8
36
1.85
93607379--93607548
92
1.8
92
96
0
313
28
28
21
21
1.99
93607374--93607545
46
3.7
46
80
11
217
29
27
21
21
1.99
93607376--93607564
46
4.1
46
73
17
151
28
28
21
21
1.99
93607964--93608023
30
2.0
30
90
0
93
30
25
8
36
1.85
93620070--93620152
24
3.5
24
96
0
148
20
13
30
36
1.91
93626401--93626434
17
2.0
17
94
0
59
55
0
5
38
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93627609--93627676
24
2.8
24
93
0
109
20
13
30
35
1.91
93631880--93631977
27
3.5
28
90
2
135
26
13
28
31
1.94
93631908--93631990
27
3.0
27
87
5
96
30
12
25
32
1.92
93631880--93631991
28
4.0
27
83
6
98
28
12
25
33
1.92
93636437--93636640
27
7.5
27
84
4
187
28
28
15
26
1.96
93644483--93644686
27
7.5
27
84
4
187
28
28
16
26
1.97
93644483--93644686
82
2.5
79
80
4
210
28
28
16
26
1.97
93651343--93651440
27
3.5
28
90
2
135
26
13
28
31
1.94
93651371--93651453
27
3.0
27
87
5
96
30
12
25
32
1.92
93651343--93651454
28
4.0
27
83
6
98
28
12
25
33
1.92
93655487--93655698
40
5.3
39
88
4
237
25
21
27
25
1.99
93655434--93655696
40
6.6
39
83
6
235
25
21
27
25
1.99
93658878--93659100
47
4.7
47
78
9
222
23
30
19
26
1.98
93658883--93659100
94
2.3
93
82
7
253
23
30
18
27
1.98
93659820--93659844
12
2.1
12
100
0
50
60
16
8
16
1.58
93662473--93662517
19
2.3
20
85
11
58
64
0
6
28
1.19
93662449--93662496
25
1.9
24
91
4
69
66
0
8
25
1.19
93662547--93662767
3
73.7
3
65
12
87
60
2
8
28
1.37
93662621--93662685
23
3.0
23
74
17
66
56
0
12
30
1.36
93662555--93662687
43
2.9
46
77
7
110
58
2
9
29
1.42
93662655--93662717
14
4.4
15
74
9
60
55
0
9
34
1.32
93662811--93662860
16
3.2
16
83
11
59
58
2
2
38
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93662835--93662859
12
2.1
12
100
0
50
60
0
0
40
0.97
93662809--93662877
18
4.0
17
76
10
52
60
1
4
33
1.25
93662913--93662947
3
11.7
3
87
0
52
65
0
5
28
1.15
93664354--93664452
45
2.2
45
80
5
112
28
26
17
28
1.97
93664487--93664629
44
3.3
43
69
18
125
22
23
21
32
1.98
93664482--93664646
86
1.9
86
91
0
267
24
22
20
32
1.98
93664614--93664687
36
2.1
36
94
0
130
27
24
24
24
2.00
93664528--93664773
122
2.0
122
95
0
438
23
23
22
29
1.99
93664477--93664855
208
1.8
208
91
0
623
22
24
22
31
1.98
93664651--93665069
175
2.4
177
86
3
580
21
25
22
31
1.98
93664650--93665069
89
4.8
89
90
1
575
21
25
22
31
1.98
93664862--93665014
44
3.5
44
69
6
139
20
26
22
31
1.98
93672990--93673033
9
5.0
9
88
2
63
47
11
18
22
1.80
93672990--93673046
27
2.2
26
83
3
69
47
12
17
22
1.81
93676876--93677109
3
78.7
3
67
9
104
60
1
8
29
1.35
93676890--93677077
47
4.0
46
75
12
159
61
2
8
27
1.36
93676897--93677103
94
2.2
93
80
6
220
59
1
8
29
1.38
93677041--93677103
14
4.4
15
78
9
69
57
0
7
34
1.28
93681526--93681569
19
2.3
19
84
7
54
56
29
2
11
1.46
93683492--93683547
28
2.0
28
96
0
103
33
21
25
19
1.97
93686510--93686595
45
1.9
45
95
4
156
29
12
23
34
1.92
93692547--93692697
38
4.0
38
85
3
187
37
28
16
17
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93692634--93692713
16
4.6
16
72
17
70
32
30
18
18
1.95
93692634--93692751
54
2.2
54
90
3
184
31
28
20
19
1.97
93692595--93692782
92
2.0
92
90
0
295
33
28
19
18
1.96
93692688--93692795
38
2.8
38
84
2
137
35
25
19
19
1.95
93697908--93697940
11
2.9
12
86
13
52
33
0
0
66
0.92
93698163--93698201
11
3.5
11
82
0
51
58
5
12
23
1.54
93713637--93713662
13
2.0
13
100
0
52
38
15
0
46
1.46
93725756--93725793
19
2.0
19
89
0
58
73
0
0
26
0.83
93725966--93726015
25
2.0
25
88
7
75
34
2
0
64
1.05
93726732--93726791
22
2.8
22
73
12
54
53
6
6
33
1.53
93732375--93732517
48
3.0
48
80
0
151
29
26
20
23
1.99
93735380--93735986
155
4.0
155
81
5
741
30
18
21
29
1.97
93735615--93735986
148
2.5
147
87
4
501
31
18
19
30
1.96
93736792--93736839
7
6.4
7
79
11
51
22
0
29
47
1.51
93736891--93736925
15
2.4
14
90
4
52
17
0
37
45
1.48
93737001--93737062
15
4.3
14
79
6
61
27
1
32
38
1.66
93737011--93737066
29
2.0
28
89
3
85
26
1
30
41
1.66
93737074--93737129
14
3.9
14
73
13
51
23
0
30
46
1.53
93737162--93737342
80
2.3
80
82
1
202
25
1
32
40
1.63
93737299--93737367
29
2.3
30
90
2
113
20
2
49
27
1.63
93737307--93737360
15
3.7
15
70
5
56
22
3
50
24
1.65
93737479--93737529
26
2.0
24
85
14
68
43
9
3
43
1.56
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93737476--93737528
18
3.1
17
83
5
63
43
9
3
43
1.55
93737648--93737680
16
2.0
17
94
5
59
27
0
6
66
1.15
93738695--93738733
10
3.7
10
83
12
51
12
12
2
71
1.24
93739007--93739163
84
1.9
84
90
1
253
25
18
11
44
1.83
93741140--93741272
64
2.1
64
97
0
248
37
12
4
45
1.62
93741321--93741391
24
3.0
24
91
0
115
28
18
8
45
1.78
93741565--93741638
29
2.6
29
93
4
123
47
1
0
51
1.09
93741565--93741649
15
5.8
15
71
20
81
45
1
0
52
1.08
93741754--93742119
9
41.6
9
73
11
161
47
13
1
37
1.52
93741765--93741861
44
2.2
46
85
7
139
48
14
1
36
1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349