Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  306  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102301833--102301862
12
2.5
12
94
0
51
40
6
23
30
1.80
102303980--102304022
18
2.3
19
88
11
63
62
0
9
27
1.25
102303994--102304034
15
2.6
17
82
17
54
65
0
4
29
1.13
102304495--102304545
20
2.6
20
78
9
52
54
1
43
0
1.11
102304501--102304549
18
2.9
17
72
21
50
48
2
48
0
1.12
102304607--102304654
22
2.1
23
84
3
62
20
4
2
72
1.11
102305172--102305203
16
2.0
16
93
0
55
12
6
40
40
1.68
102315778--102315825
25
1.9
25
87
8
71
27
18
22
31
1.97
102326074--102326125
23
2.2
24
80
19
65
34
0
1
63
1.06
102326662--102326877
114
1.9
114
91
1
353
17
12
20
50
1.78
102327377--102327435
31
1.9
31
89
6
93
44
10
5
40
1.60
102329125--102329190
28
2.3
28
84
2
78
36
3
3
57
1.29
102330247--102330299
21
2.5
21
93
0
88
26
9
35
28
1.87
102330408--102330470
30
2.0
30
82
11
74
50
1
1
46
1.20
102330496--102330571
35
2.2
35
81
9
84
53
6
0
39
1.27
102338154--102338222
34
2.0
34
100
0
138
20
21
11
46
1.82
102346241--102346291
20
2.5
20
87
6
59
29
11
13
45
1.79
102347652--102347706
19
2.8
19
80
2
65
43
0
1
54
1.10
102353325--102353509
40
4.6
39
83
5
203
24
22
28
24
2.00
102353320--102353507
79
2.4
82
83
8
226
25
22
27
25
2.00
102353378--102353542
79
2.1
79
82
6
192
26
21
28
24
1.99
102358770--102358817
20
2.3
21
78
7
53
41
2
10
45
1.50
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102361142--102361195
26
2.1
26
100
0
108
25
14
12
46
1.81
102362184--102362223
20
2.0
20
85
0
53
30
2
20
47
1.63
102367279--102367372
47
2.0
47
97
0
179
46
9
6
37
1.62
102369939--102369994
27
2.1
27
100
0
112
44
14
3
37
1.62
102380294--102380371
22
3.6
22
74
17
83
32
20
1
46
1.59
102380280--102380370
43
2.1
43
95
0
164
32
20
1
45
1.59
102380280--102380343
21
3.0
21
72
19
69
35
20
0
43
1.52
102381670--102381708
17
2.2
18
86
4
53
5
12
7
74
1.20
102381716--102381758
8
5.4
8
86
8
61
60
0
0
39
0.97
102381910--102381951
19
2.1
21
86
8
61
33
7
2
57
1.39
102381916--102381958
21
2.2
19
83
8
50
39
4
2
53
1.34
102389101--102389176
6
12.5
6
81
4
73
76
5
3
14
1.11
102390091--102390455
46
7.9
46
92
0
570
23
24
13
38
1.91
102399953--102400145
47
4.0
49
81
9
200
29
28
17
24
1.97
102403809--102403848
16
2.4
18
80
16
50
75
7
0
17
1.03
102410656--102410688
16
2.1
16
88
5
50
30
0
0
69
0.88
102415456--102415625
65
2.5
67
90
4
254
35
8
8
47
1.65
102415761--102415793
16
2.0
17
88
5
50
45
12
6
36
1.66
102419802--102419827
3
8.7
3
100
0
52
69
0
0
30
0.89
102421676--102421725
21
2.4
21
73
3
57
30
0
0
70
0.88
102421682--102421747
16
4.3
15
75
11
53
28
1
0
69
0.97
102421735--102421799
35
1.9
33
81
12
78
27
0
9
63
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102421773--102421820
21
2.3
20
82
7
51
20
0
8
70
1.12
102421799--102421847
26
2.0
24
88
8
71
30
0
6
63
1.19
102424230--102424363
39
3.3
40
81
8
148
34
21
19
24
1.96
102424254--102424405
40
3.8
39
77
9
139
29
21
20
28
1.98
102424335--102424672
155
2.2
154
90
2
534
28
18
21
31
1.97
102424866--102424907
21
2.0
21
100
0
84
42
0
4
52
1.22
102424865--102424911
21
2.4
19
86
13
76
44
0
4
51
1.21
102425002--102425054
21
2.5
21
77
17
56
16
0
47
35
1.48
102425220--102425245
7
3.7
7
100
0
52
15
0
38
46
1.46
102425269--102425298
15
2.0
15
93
0
51
20
0
36
43
1.52
102425574--102425608
7
5.0
7
100
0
70
57
0
0
42
0.99
102425574--102425639
14
4.6
14
83
9
53
65
3
0
31
1.08
102426929--102426965
18
2.1
18
100
0
74
27
5
13
54
1.61
102429177--102429237
19
3.1
19
70
13
52
32
8
14
44
1.75
102436480--102436543
27
2.5
24
78
16
65
39
15
0
45
1.47
102436498--102436542
14
3.4
14
79
14
51
42
13
0
44
1.43
102436791--102436815
6
4.2
6
100
0
50
36
16
16
32
1.90
102437626--102437676
13
3.9
13
86
0
75
39
19
7
33
1.81
102447189--102447982
370
2.1
371
85
3
1048
50
15
16
17
1.79
102448162--102448194
16
2.2
15
89
10
50
75
6
15
3
1.11
102448535--102448583
25
2.0
25
84
8
64
75
2
14
8
1.12
102448086--102450167
372
5.6
369
85
4
2665
51
14
17
16
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102448897--102448941
21
2.1
22
84
12
58
73
2
15
8
1.18
102449647--102449680
17
2.1
15
89
10
50
73
5
17
2
1.16
102449641--102449683
21
2.0
22
86
13
63
69
4
18
6
1.29
102451935--102452158
88
2.6
88
90
0
342
27
16
28
27
1.97
102452120--102452686
44
13.1
44
90
3
880
29
17
32
21
1.96
102452120--102452904
132
6.1
132
87
6
1171
29
17
32
21
1.96
102452655--102452717
31
2.0
31
96
0
117
39
15
33
11
1.83
102452686--102452904
44
5.0
44
95
0
384
28
18
32
20
1.96
102452611--102452849
75
3.0
75
87
9
316
32
17
32
17
1.94
102452694--102452938
88
2.8
88
91
0
373
31
17
31
20
1.95
102452527--102452849
163
2.0
159
94
2
565
30
17
32
18
1.95
102453249--102453278
12
2.5
12
94
0
51
16
43
20
20
1.88
102459126--102459389
46
5.6
47
74
9
211
23
28
18
29
1.98
102459127--102459392
94
2.9
90
80
9
306
23
27
19
29
1.98
102462707--102462736
14
2.1
14
93
0
51
76
0
20
3
0.92
102462711--102462752
18
2.3
19
80
12
52
71
4
19
4
1.22
102464777--102464810
6
5.7
6
92
0
59
64
17
0
17
1.29
102468827--102468861
12
3.0
11
91
8
52
8
28
42
20
1.81
102470440--102470611
94
1.8
94
83
2
229
29
18
28
24
1.98
102471901--102471942
21
2.0
21
90
4
68
9
35
28
26
1.88
102480126--102480164
18
2.1
19
85
9
53
38
5
15
41
1.69
102494057--102494112
28
2.0
28
100
0
112
14
10
25
50
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102495643--102495694
20
2.6
20
90
6
79
46
1
0
51
1.12
102497549--102497595
21
2.1
22
84
7
60
46
0
0
53
1.00
102502334--102502374
21
2.0
21
90
0
64
29
21
29
19
1.98
102504892--102504916
12
2.1
12
100
0
50
16
8
8
68
1.38
102508113--102508139
11
2.5
11
100
0
54
22
18
18
40
1.91
102512490--102512655
87
1.9
87
98
0
323
35
12
16
35
1.86
102513263--102513292
16
1.9
15
93
6
51
16
0
10
73
1.09
102520831--102520902
33
2.3
33
83
7
96
22
27
22
27
1.99
102529604--102529637
14
2.4
14
95
0
59
26
5
29
38
1.80
102531113--102531150
6
6.3
6
91
8
60
81
2
0
15
0.80
102534653--102534700
25
1.9
25
83
8
62
75
4
2
18
1.07
102537155--102537254
51
2.0
51
81
0
119
33
28
17
22
1.96
102537224--102537339
43
2.8
41
84
4
133
31
29
18
20
1.97
102557641--102557687
23
2.0
23
100
0
94
21
17
21
40
1.91
102558287--102558338
27
1.9
27
84
7
70
59
0
7
32
1.26
102558880--102558947
16
4.2
16
94
0
118
27
0
36
35
1.58
102558928--102559018
45
2.0
44
85
2
119
30
5
28
35
1.80
102559163--102559204
15
2.7
16
82
14
52
52
2
0
45
1.13
102559172--102559213
15
2.9
15
82
10
52
52
0
0
47
1.00
102559198--102559384
61
3.1
60
71
14
195
48
6
2
42
1.42
102559282--102559333
15
3.6
15
80
12
56
53
1
0
44
1.11
102559166--102559384
120
1.8
120
97
0
420
48
6
1
42
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
102559201--102559385
59
3.1
59
68
20
175
48
7
2
42
1.42
102563644--102563708
30
2.1
31
88
5
96
46
1
4
47
1.32
102563910--102563940
2
16.0
2
93
6
55
51
0
0
48
1.00
102564349--102564378
5
6.0
5
96
0
51
3
20
0
76
0.92
102581241--102581291
18
2.9
17
80
16
59
74
0
1
23
0.92
102581245--102581294
26
2.0
25
84
11
66
76
0
2
22
0.89
102581855--102581916
21
2.9
22
83
9
74
37
1
1
59
1.17
102581878--102581921
10
4.5
10
78
16
56
40
0
0
59
0.98
102583909--102583992
40
2.1
39
84
8
107
39
21
7
32
1.80
102583909--102583976
21
3.3
21
68
15
61
38
20
8
32
1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349