genome.fa.s1.2.7.7.80.10.50.1000.330.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  330  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109438271--109438400	9	14.6	9	76	13	83	26	2	2	69	1.12
109438338--109438400	25	2.5	25	77	10	58	20	1	3	74	1.04
109438282--109438437	79	1.9	81	84	8	212	27	1	2	67	1.14
109438417--109438461	24	1.9	24	86	13	67	20	2	4	73	1.11
109438271--109438480	9	22.3	10	70	16	71	27	1	2	68	1.12
109438525--109438559	16	2.2	16	90	5	54	25	2	0	71	1.00
109443899--109443932	17	2.0	17	88	0	50	23	0	5	70	1.09
109447777--109447910	44	3.0	45	83	4	162	35	13	23	27	1.93
109455155--109455288	44	3.0	45	83	4	162	35	13	23	27	1.93
109464435--109464630	88	2.3	87	81	8	217	40	17	7	33	1.78
109465098--109465149	19	2.8	18	75	18	61	34	1	0	63	1.06
109465181--109465362	90	2.0	91	80	3	206	34	9	19	36	1.84
109472173--109472210	18	2.2	16	90	9	58	23	7	2	65	1.32
109474988--109475074	45	1.9	45	90	0	138	26	14	24	34	1.94
109479256--109479300	18	2.5	18	96	0	81	31	17	22	28	1.97
109488005--109488052	20	2.5	20	86	3	62	62	2	8	27	1.35
109488039--109488082	17	2.4	18	77	14	54	56	9	0	34	1.31
109488078--109488110	15	2.2	15	100	0	66	48	12	0	39	1.40
109489022--109489057	18	2.0	18	100	0	72	16	33	16	33	1.92
109504169--109504211	16	2.8	16	92	3	70	55	0	11	32	1.36
109505219--109505244	3	8.7	3	100	0	52	0	34	0	65	0.93
109507790--109507826	13	2.8	14	88	8	51	51	0	2	45	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109511676--109511707	4	7.8	4	93	6	55	75	0	25	0	0.81
109513180--109513218	20	2.0	20	84	0	51	48	0	7	43	1.31
109516346--109516469	30	4.1	30	93	1	203	25	24	6	43	1.78
109516356--109516463	15	7.2	15	67	12	78	25	22	7	44	1.79
109521039--109521159	30	4.0	30	87	5	165	27	20	6	45	1.76
109521072--109521155	15	5.6	15	71	10	64	28	17	7	46	1.75
109525694--109525764	31	2.2	32	90	5	108	64	18	4	12	1.42
109525982--109526047	21	3.2	20	77	12	53	3	46	19	30	1.65
109526460--109526488	13	2.1	14	93	6	51	55	10	0	34	1.34
109527491--109527538	25	1.9	25	82	0	60	45	6	14	33	1.70
109529980--109530090	40	2.8	40	79	1	116	27	18	17	36	1.93
109531187--109531266	38	2.2	37	90	4	126	46	25	2	26	1.65
109532069--109532116	25	1.9	25	87	8	71	18	0	41	39	1.51
109532094--109532156	21	3.0	22	77	11	60	17	1	41	39	1.59
109532124--109532154	14	2.2	14	94	0	53	12	3	48	35	1.58
109532288--109532337	22	2.3	21	82	3	64	28	0	26	46	1.53
109532329--109532361	14	2.3	15	89	5	50	15	3	45	36	1.61
109533142--109533219	37	2.1	37	95	0	138	24	43	3	28	1.71
109535646--109535682	18	2.1	18	100	0	74	29	21	16	32	1.95
109537557--109537624	30	2.3	30	82	5	75	57	0	4	38	1.19
109537865--109537933	18	3.8	18	78	17	63	62	1	5	30	1.27
109537905--109538122	20	10.9	20	64	22	77	60	2	4	33	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109538060--109538128	29	2.6	26	73	17	61	63	1	1	33	1.12
109539797--109540379	205	2.8	205	92	0	941	29	21	18	30	1.97
109546734--109546780	19	2.5	19	76	10	51	21	2	4	72	1.12
109548691--109548867	27	6.5	26	80	6	149	27	16	27	28	1.97
109548691--109548846	82	1.9	81	84	6	208	27	16	27	28	1.97
109548687--109548867	82	2.2	81	80	4	204	27	16	27	28	1.97
109550281--109550388	43	2.6	43	89	2	157	23	15	29	31	1.95
109550294--109550407	43	2.7	43	83	6	108	21	22	28	27	1.99
109550623--109550673	21	2.5	21	74	3	50	21	0	23	54	1.44
109550628--109550688	28	2.2	28	85	5	79	24	1	24	49	1.60
109550977--109551227	41	6.2	40	83	2	286	21	16	24	36	1.94
109554671--109554729	3	19.7	3	100	0	118	67	0	32	0	0.91
109566483--109566569	33	2.8	30	75	13	86	35	48	3	12	1.58
109589281--109589557	111	2.5	111	89	0	410	18	10	28	43	1.82
109589244--109589557	37	8.5	37	83	2	353	18	10	28	43	1.82
109593251--109593426	46	3.8	46	75	15	164	19	19	30	30	1.97
109598566--109598673	26	4.2	26	92	0	180	35	24	8	32	1.85
109603543--109603573	12	2.6	12	100	0	62	12	51	25	9	1.70
109605173--109605221	25	2.0	26	84	8	66	24	16	20	38	1.92
109606670--109606774	25	4.2	26	89	6	153	37	20	6	35	1.79
109613703--109613928	9	24.6	9	75	9	143	38	0	13	47	1.49
109613703--109613928	18	12.3	18	76	9	161	38	0	13	47	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109613756--109613928	27	6.2	27	77	10	159	38	1	13	46	1.51
109613679--109613900	114	1.9	114	86	3	313	38	0	13	47	1.49
109614033--109614088	15	3.8	15	78	21	73	53	0	0	46	1.00
109614265--109614332	24	2.8	24	84	8	93	47	7	17	27	1.74
109616244--109616495	134	1.9	132	96	1	468	51	18	9	19	1.73
109619254--109619285	15	2.1	15	94	0	55	31	9	0	59	1.29
109620147--109620180	14	2.5	13	90	9	50	47	20	0	32	1.51
109620343--109620481	40	3.4	40	88	5	183	19	22	23	35	1.96
109627755--109628024	35	7.7	35	81	6	278	30	14	23	32	1.94
109627752--109628019	105	2.6	105	90	0	410	30	14	23	32	1.94
109645686--109645727	20	2.1	20	90	0	66	33	11	11	42	1.78
109647811--109647984	46	3.8	47	87	3	228	21	22	14	41	1.89
109664318--109664369	27	1.9	27	85	14	72	28	11	3	55	1.53
109664314--109664369	28	2.0	27	83	10	69	30	10	3	55	1.51
109670957--109670983	3	9.0	3	100	0	54	66	0	0	33	0.92
109678705--109678784	42	1.9	42	92	0	133	30	12	23	33	1.92
109679712--109679895	90	2.1	89	84	3	235	39	21	7	31	1.82
109679856--109679907	23	2.3	22	83	9	61	51	19	5	23	1.67
109679868--109679918	23	2.2	23	100	0	102	52	19	3	23	1.62
109680063--109680101	18	2.2	17	86	13	53	15	7	0	76	0.99
109692103--109692268	86	1.9	88	81	6	203	34	19	18	27	1.95
109692180--109692316	73	1.9	73	85	0	193	30	24	18	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109692371--109693760	74	18.8	73	82	10	1501	32	19	17	30	1.95
109692571--109693760	72	16.2	73	82	10	1315	33	19	17	30	1.95
109692371--109693742	143	9.2	147	81	10	1503	32	19	17	30	1.95
109693384--109693756	75	5.1	72	83	9	431	32	19	16	30	1.94
109706538--109706690	82	1.9	83	87	6	231	29	17	20	32	1.95
109706325--109707626	73	17.5	70	70	18	650	30	17	20	31	1.95
109706327--109707626	143	8.7	143	76	15	951	30	17	20	32	1.95
109706289--109707372	511	2.1	511	87	8	1564	30	17	19	31	1.95
109707117--109707373	72	3.6	71	78	12	249	29	17	19	33	1.95
109710018--109710075	1	58.0	1	100	0	116	0	100	0	0	0.00
109725556--109725628	21	3.5	20	77	18	69	61	1	6	30	1.30
109725571--109725613	15	2.9	15	78	21	54	65	0	4	30	1.13
109726848--109726872	13	1.9	13	100	0	50	40	0	0	60	0.97
109732504--109732538	5	6.8	5	90	3	52	17	5	0	77	0.96
109732504--109732540	15	2.4	16	86	9	58	18	8	0	72	1.08
109736347--109736374	3	9.3	3	100	0	56	35	0	0	64	0.94
109736521--109736565	21	2.1	21	84	12	56	37	0	2	60	1.09
109750772--109750823	22	2.4	22	93	0	86	57	17	5	19	1.59
109755381--109755426	24	1.9	24	90	0	74	30	2	15	52	1.55
109759606--109759830	91	2.5	89	82	8	283	42	21	6	29	1.77
109759628--109759830	89	2.2	90	86	2	282	42	21	6	30	1.77
109759849--109759912	19	3.5	19	73	12	53	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109760178--109760250	9	7.7	9	74	10	56	35	2	1	60	1.20
109760215--109760255	19	2.1	20	86	13	59	29	2	4	63	1.28
109760180--109760250	28	2.5	29	79	9	83	36	2	1	59	1.21
109761449--109761822	42	8.9	42	86	3	439	31	20	20	26	1.98
109761891--109761924	14	2.4	14	95	0	59	52	20	8	17	1.71
109762148--109762218	21	3.4	21	80	0	79	2	45	18	33	1.64
109767669--109767833	18	9.5	18	66	30	69	33	0	20	45	1.52
109767669--109767833	7	19.0	9	65	32	69	33	0	20	45	1.52
109767683--109767979	19	15.6	19	67	22	78	31	0	20	47	1.53
109767714--109768095	26	15.2	26	88	6	531	32	0	20	46	1.56

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349