genome.fa.s1.2.7.7.80.10.50.1000.207.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  207  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66704640--66704817	27	6.6	27	85	3	214	30	28	14	26	1.95
66704661--66704816	82	1.9	81	89	3	242	30	28	14	26	1.95
66707549--66707724	48	3.8	47	83	6	216	28	16	30	24	1.96
66709889--66710060	40	4.3	40	88	2	222	25	27	21	25	1.99
66709891--66710113	40	5.6	39	83	5	216	25	27	21	25	1.99
66709889--66710113	80	2.8	79	80	7	240	25	27	21	25	1.99
66710045--66710122	40	1.9	41	82	10	97	26	28	20	24	1.99
66717085--66717111	10	2.7	10	100	0	54	62	11	0	25	1.28
66722091--66722200	43	2.5	46	80	8	145	33	8	12	45	1.72
66722176--66722213	13	2.9	13	88	0	58	36	0	15	47	1.46
66723710--66723888	85	2.1	85	97	0	340	37	8	27	26	1.85
66723710--66723838	39	3.0	44	60	22	101	38	9	25	26	1.86
66725153--66725890	47	15.6	47	93	2	1049	33	9	29	28	1.88
66725153--66725890	143	5.2	143	93	2	1084	33	9	29	28	1.88
66729512--66729617	46	2.3	46	83	0	149	32	21	13	33	1.92
66729512--66729631	46	2.6	46	77	5	134	30	21	14	33	1.93
66731377--66731475	28	3.5	27	81	10	101	28	11	14	46	1.78
66731377--66731475	29	3.5	28	83	8	112	28	11	14	46	1.78
66742428--66742552	46	2.7	46	85	11	175	27	19	31	22	1.98
66742425--66742590	46	3.6	45	80	11	169	25	19	30	24	1.98
66742566--66742617	27	2.0	26	84	3	68	26	17	26	28	1.97
66748529--66748627	43	2.3	42	82	1	117	35	8	13	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66748987--66749036	20	2.6	20	81	6	59	36	6	2	56	1.36
66750447--66750525	22	3.6	22	91	0	113	25	30	30	13	1.94
66752366--66752600	50	4.9	50	77	8	218	22	27	20	29	1.98
66757989--66758073	42	2.0	42	97	0	161	47	17	7	28	1.74
66759957--66759994	10	3.8	10	86	6	51	0	44	0	55	0.99
66760502--66760549	3	16.0	3	95	0	87	33	2	0	64	1.05
66761834--66761889	6	9.3	6	96	0	94	16	1	1	80	0.88
66769313--66769373	30	2.0	30	83	0	77	31	22	8	37	1.84
66771692--66771750	22	2.6	22	78	19	59	45	0	1	52	1.10
66771706--66771758	25	2.2	23	83	16	63	50	0	1	47	1.12
66776577--66776659	41	2.0	41	97	0	157	39	9	22	27	1.85
66777844--66777893	19	2.7	18	87	9	73	40	2	12	46	1.52
66786078--66786433	131	2.7	132	85	0	455	29	18	18	32	1.95
66786374--66786704	130	2.5	130	77	6	285	27	18	18	35	1.94
66787165--66787190	9	2.9	9	100	0	52	57	0	0	42	0.98
66797403--66797880	44	10.9	44	88	0	634	27	15	30	26	1.96
66800712--66800966	131	1.9	131	86	0	357	29	17	18	34	1.94
66803918--66803955	17	2.2	18	85	4	51	63	2	23	10	1.39
66803937--66803991	12	4.6	12	73	15	51	63	0	23	12	1.29
66810405--66810493	27	3.3	27	85	3	126	29	24	6	39	1.81
66810525--66810673	27	5.5	27	83	3	174	43	19	6	30	1.75
66810506--66810673	54	3.1	53	79	3	174	43	19	7	29	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66810525--66810760	110	2.2	108	82	3	276	40	19	7	32	1.79
66810577--66810783	110	1.9	110	79	4	238	41	16	10	31	1.82
66810792--66810855	26	2.4	26	79	7	67	35	18	25	20	1.95
66811954--66812061	31	3.5	31	93	0	180	29	18	25	26	1.98
66814526--66814566	20	2.0	20	100	0	82	29	19	14	36	1.92
66816863--66817014	27	5.6	27	92	3	232	30	28	13	27	1.94
66816863--66817039	55	3.2	55	89	0	246	31	29	12	26	1.93
66825009--66825160	27	5.6	27	92	3	232	30	28	13	27	1.94
66825009--66825185	55	3.2	55	89	0	246	31	29	12	26	1.93
66827177--66827279	44	2.4	41	81	10	125	33	26	17	22	1.96
66827191--66827278	44	2.0	44	88	4	133	32	28	15	22	1.95
66828655--66828812	68	2.3	69	78	13	164	20	27	15	36	1.93
66831567--66831663	40	2.3	44	84	8	130	28	26	15	28	1.96
66834728--66834773	23	2.0	23	84	12	60	45	10	6	36	1.65
66834735--66834779	23	2.0	23	82	8	56	40	13	8	37	1.76
66842499--66842544	23	2.0	23	84	12	60	45	10	6	36	1.65
66842506--66842550	23	2.0	23	82	8	56	40	13	8	37	1.76
66856344--66856528	40	4.6	40	82	7	232	24	27	23	24	2.00
66862958--66863135	27	6.6	27	83	3	196	26	15	28	29	1.96
66862959--66863109	82	1.9	81	88	4	232	27	16	27	28	1.97
66870855--66871111	39	6.7	40	86	8	299	25	22	27	24	2.00
66870855--66871111	77	3.3	79	85	10	295	25	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66870907--66871144	79	3.1	78	85	8	249	26	21	27	24	2.00
66888830--66889001	79	2.2	79	84	3	220	25	21	27	25	1.99
66888777--66888999	40	5.6	39	81	8	209	25	21	27	25	1.99
66888857--66889034	79	2.2	80	80	3	191	25	21	28	24	1.99
66900296--66900328	13	2.6	13	90	4	50	39	0	12	48	1.40
66902896--66902950	5	10.8	5	78	18	60	20	5	0	74	1.01
66907808--66907843	17	2.1	17	100	0	72	38	0	11	50	1.38
66908489--66908546	30	1.9	30	96	0	107	22	20	32	24	1.98
66914407--66914514	43	2.5	44	81	4	139	28	16	24	30	1.96
66916351--66916388	20	1.9	20	88	0	58	18	13	31	36	1.89
66925308--66925591	40	7.1	40	84	7	328	25	21	27	25	2.00
66925308--66925591	80	3.6	80	87	4	389	25	21	27	25	2.00
66925361--66925579	119	1.8	119	92	1	368	25	21	27	26	1.99
66938909--66938961	28	1.9	27	88	3	79	41	1	16	39	1.60
66948746--66948810	31	2.1	31	91	0	103	29	7	7	55	1.56
66956538--66956701	40	4.1	40	88	3	224	21	25	29	23	1.99
66958707--66958972	47	5.7	47	74	9	147	23	28	19	28	1.98
66958802--66958975	46	3.8	45	80	7	170	23	28	20	27	1.99
66963817--66963954	68	2.0	68	92	0	231	32	21	14	31	1.93
66989544--66989635	43	2.1	43	89	0	139	22	15	27	34	1.94
66996687--66996746	20	3.0	20	95	0	111	25	33	15	26	1.95
66996730--66996847	51	2.4	51	86	2	159	27	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67005911--67006026	43	2.7	43	86	5	146	24	17	25	32	1.96
67008254--67008403	43	3.5	43	75	8	137	26	20	26	27	1.99
67013336--67013375	20	2.0	20	100	0	80	25	35	15	25	1.94
67013287--67013424	69	2.0	69	89	0	213	28	28	17	26	1.98
67013359--67013480	50	2.5	49	90	1	181	30	26	17	26	1.97
67018624--67018767	43	3.4	42	75	7	130	27	18	23	30	1.97
67027334--67027358	13	1.9	13	100	0	50	16	24	32	28	1.96
67031786--67031963	27	6.6	27	84	3	205	29	28	15	26	1.96
67031807--67031962	82	1.9	81	88	3	233	29	28	15	26	1.96
67032445--67032471	12	2.2	12	100	0	54	40	0	7	51	1.30
67039123--67039357	27	8.7	28	82	7	272	39	21	8	30	1.84
67039123--67039359	81	2.9	80	89	1	348	39	21	9	30	1.84
67039341--67039509	27	6.3	27	86	0	221	34	17	21	25	1.95
67039125--67039386	81	3.2	79	85	4	328	38	20	10	30	1.87
67039233--67039480	81	3.1	81	80	5	236	37	18	15	27	1.91
67039337--67039510	81	2.1	80	87	4	258	35	17	21	25	1.95
67039739--67039785	25	2.0	24	83	8	60	29	21	23	25	1.99
67043802--67043856	30	1.9	30	85	7	78	29	20	0	50	1.48
67049940--67050109	46	3.7	46	78	13	204	29	27	20	22	1.98
67049944--67050115	93	1.8	93	93	0	299	29	27	20	22	1.98
67052488--67052542	15	3.7	15	81	13	78	61	9	16	12	1.55
67053592--67053651	30	2.0	30	100	0	120	40	23	6	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67055542--67055712	93	1.8	93	94	0	306	28	28	21	21	1.98
67055537--67055709	46	3.7	46	77	13	201	29	27	21	21	1.98
67057467--67057651	40	4.6	40	83	3	237	22	27	24	24	2.00
67062800--67062982	39	4.6	39	79	10	183	25	22	27	24	2.00
67062802--67062982	79	2.3	80	82	6	208	25	23	27	23	2.00
67070679--67070863	40	4.6	40	83	3	237	22	27	24	24	2.00
67074427--67074594	27	6.3	26	85	4	185	39	21	13	25	1.89
67074411--67074594	79	2.3	81	84	1	237	40	20	14	25	1.90
67074441--67074594	52	2.9	53	88	3	211	40	20	14	24	1.90
67077868--67077904	18	2.1	17	95	5	65	43	13	24	18	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349