genome.fa.s1.2.7.7.80.10.50.1000.331.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  331  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109767714--109768096	51	7.7	46	87	6	277	32	1	20	46	1.58
109767979--109768022	18	2.4	18	84	0	70	34	4	18	43	1.70
109770323--109770398	7	10.9	7	74	5	64	46	35	1	17	1.56
109770439--109770488	17	3.0	17	94	2	84	50	16	0	34	1.45
109770510--109770860	113	3.1	111	80	7	411	26	23	19	30	1.98
109770645--109771042	188	2.1	188	94	0	688	26	23	18	31	1.97
109770833--109771258	114	3.7	114	79	4	464	26	23	19	30	1.98
109782023--109782067	21	2.1	21	91	0	72	37	13	22	26	1.91
109783404--109783440	13	2.8	13	87	4	56	43	0	13	43	1.44
109786397--109786459	24	2.6	24	92	0	108	41	17	7	33	1.79
109789032--109789129	23	4.3	23	90	2	162	31	26	21	20	1.98
109789039--109789127	45	2.0	45	95	0	160	31	26	22	19	1.97
109796387--109796483	23	4.3	23	90	5	162	30	26	21	20	1.98
109796394--109796481	44	2.0	45	95	2	160	30	27	22	19	1.98
109800358--109800496	27	5.1	27	85	7	142	34	22	24	18	1.96
109800358--109800496	54	2.6	53	83	4	161	34	22	24	18	1.96
109802107--109802216	26	4.2	26	95	2	177	36	24	4	34	1.76
109810409--109810441	17	1.9	17	93	0	57	75	0	24	0	0.80
109810689--109810748	30	2.0	30	96	0	111	26	5	16	51	1.65
109832371--109833131	205	3.8	204	91	3	1148	29	18	22	30	1.97
109833185--109833653	87	5.4	87	74	9	341	31	19	24	25	1.98
109833337--109833725	44	8.9	45	75	10	294	31	18	23	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109834179--109834234	22	2.5	22	88	0	76	30	3	30	35	1.75
109834828--109834962	38	3.6	38	93	5	222	50	2	15	31	1.59
109855630--109855686	22	2.5	23	85	2	71	29	3	31	35	1.75
109855637--109855686	23	2.2	22	85	3	64	30	2	32	36	1.69
109859868--109860632	205	3.7	203	92	2	1212	28	17	22	30	1.97
109860752--109861231	44	10.9	44	74	9	329	31	18	24	25	1.98
109860749--109861170	133	3.2	132	93	1	702	30	18	24	25	1.98
109861690--109861746	22	2.5	23	85	2	71	29	3	29	36	1.74
109861697--109861746	23	2.2	22	85	3	64	30	2	30	38	1.69
109862326--109862491	77	2.1	77	84	5	210	53	2	15	28	1.54
109862353--109862491	39	3.6	39	97	0	246	50	2	15	31	1.58
109862353--109862503	77	1.9	78	90	4	243	47	3	17	31	1.64
109870858--109870915	30	1.9	29	83	13	73	62	6	0	31	1.22
109878452--109878506	29	2.0	28	86	13	80	40	0	1	58	1.09
109883471--109883508	16	2.4	16	86	0	58	44	21	23	10	1.83
109883735--109883809	29	2.6	29	87	2	89	24	16	34	25	1.95
109883741--109883809	28	2.4	29	90	2	104	26	14	31	27	1.95
109889161--109889194	16	2.1	16	100	0	68	32	11	23	32	1.91
109889244--109889457	47	4.7	44	78	12	171	21	29	20	28	1.98
109889797--109889853	30	1.9	30	92	0	96	28	22	14	35	1.93
109890471--109890512	22	1.9	22	95	0	75	19	40	28	11	1.87
109890595--109890652	6	10.2	6	87	7	50	53	0	46	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109890599--109890637	11	3.6	10	89	10	51	61	0	38	0	0.96
109890599--109890637	5	7.2	5	91	8	51	61	0	38	0	0.96
109890599--109890637	16	2.4	16	87	12	53	61	0	38	0	0.96
109890673--109890743	6	11.7	6	79	7	63	74	0	23	1	0.90
109890676--109890733	20	3.0	20	85	5	75	70	0	27	1	0.97
109890669--109890741	26	2.8	26	83	2	85	73	0	24	1	0.90
109891146--109891177	15	2.1	16	88	11	50	56	0	3	40	1.15
109891175--109891989	422	1.9	421	90	4	1286	59	8	6	26	1.51
109891691--109891761	14	5.3	13	73	17	56	74	2	1	21	1.02
109891696--109891741	14	3.2	14	84	6	65	73	0	0	26	0.83
109891690--109891741	14	3.4	15	84	10	61	73	0	0	26	0.84
109891173--109891995	276	2.9	275	86	5	1136	59	8	5	26	1.50
109891175--109892004	140	5.9	140	86	7	1112	59	8	6	26	1.51
109891874--109892111	111	2.2	107	84	8	302	59	9	5	25	1.51
109891729--109892259	250	2.1	254	90	6	842	58	8	6	27	1.51
109892229--109892303	30	2.8	25	75	16	78	70	4	2	22	1.16
109892268--109892303	13	2.9	12	84	8	54	77	5	0	16	0.94
109891999--109892596	146	4.1	147	89	6	860	58	7	6	28	1.49
109891589--109892405	397	2.1	395	88	6	1215	58	7	6	27	1.49
109892414--109892448	13	2.9	12	88	12	54	74	8	0	17	1.06
109892760--109892817	27	2.1	27	100	0	116	31	3	17	48	1.64
109903853--109903887	17	2.1	17	100	0	70	65	0	11	22	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109907094--109907158	27	2.3	28	80	12	80	36	0	0	63	0.95
109907094--109907158	28	2.3	28	76	10	71	36	0	0	63	0.95
109916074--109916124	25	2.0	25	100	0	102	23	25	15	35	1.94
109924668--109924710	20	2.2	19	83	4	50	34	2	2	60	1.22
109925434--109925783	41	8.5	41	87	0	484	24	18	28	28	1.98
109925393--109925783	82	4.8	83	85	4	352	25	18	28	27	1.98
109926093--109926143	18	2.8	18	85	8	68	45	3	1	49	1.32
109926560--109926594	15	2.3	15	95	0	61	57	0	8	34	1.29
109926566--109926633	24	2.8	23	76	10	64	57	0	4	38	1.19
109930106--109930173	24	2.8	24	86	8	102	27	19	7	45	1.76
109930350--109930405	15	3.8	15	80	20	73	46	0	0	53	1.00
109930510--109930726	9	23.6	9	75	9	134	47	12	0	38	1.48
109930510--109930726	18	12.3	18	74	10	162	47	12	0	38	1.48
109930519--109930750	114	2.0	114	84	3	297	47	12	0	38	1.48
109936771--109937013	43	5.7	42	88	7	357	23	33	20	22	1.97
109936771--109937013	86	2.8	85	94	0	432	23	33	20	22	1.97
109936771--109937013	128	1.9	129	96	2	454	23	33	20	22	1.97
109937900--109937933	16	2.1	16	100	0	68	38	29	0	32	1.58
109940385--109940443	24	2.5	24	97	0	109	40	11	6	40	1.68
109952892--109952929	18	2.1	18	85	9	51	13	15	10	60	1.59
109960070--109960173	26	4.0	26	91	0	172	32	6	24	36	1.81
109967159--109967258	26	3.8	26	91	0	164	33	6	24	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109979572--109979706	41	3.3	41	71	13	141	46	1	3	48	1.29
109979613--109979727	21	5.5	21	67	22	82	48	0	3	46	1.25
109979562--109979739	83	2.1	82	94	3	320	48	1	3	47	1.26
109979583--109979714	38	3.3	38	69	17	122	48	1	3	46	1.29
109979704--109979740	14	2.7	14	91	4	58	51	0	0	48	1.00
109979621--109979738	27	4.3	27	65	19	73	49	0	3	46	1.24
109980578--109980615	19	2.0	19	100	0	76	57	26	10	5	1.53
109981779--109981955	50	3.5	50	93	0	291	35	16	22	25	1.95
109981931--109982048	31	3.8	31	91	0	200	27	17	27	27	1.98
109982067--109982189	47	2.6	48	84	5	151	30	12	27	30	1.93
109983887--109983928	20	2.0	22	86	9	61	42	0	0	57	0.99
109987550--109987606	28	2.0	28	86	0	78	29	7	5	57	1.47
110000160--110000569	74	5.4	74	85	8	506	30	17	21	30	1.96
110000231--110000524	159	1.9	159	91	0	491	29	17	21	30	1.96
110002120--110002164	8	5.4	8	81	7	54	80	0	2	17	0.82
110002883--110002939	28	2.0	28	86	0	78	29	7	5	57	1.47
110005191--110006962	591	3.0	591	99	0	3526	21	21	20	36	1.95
110014052--110014240	107	1.8	102	83	10	249	28	12	7	51	1.66
110033608--110033636	10	2.9	10	100	0	58	51	0	48	0	1.00
110035978--110036127	56	2.7	55	80	5	176	47	7	15	30	1.72
110043975--110044026	24	2.2	24	85	0	68	53	9	3	32	1.51
110045840--110045902	30	2.1	29	83	13	76	53	1	11	33	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110054024--110054074	22	2.4	21	83	9	59	56	17	5	19	1.61
110056890--110056972	4	20.8	4	82	0	85	7	20	46	25	1.76
110056890--110056960	20	3.3	20	83	14	97	7	19	47	25	1.74
110056899--110056963	24	2.7	24	100	0	130	7	21	44	26	1.79
110057948--110058006	29	2.1	28	81	9	66	49	0	22	28	1.50
110066198--110066258	30	2.0	30	93	0	104	24	34	26	14	1.94
110067670--110067706	5	7.6	5	93	6	67	81	0	0	18	0.70
110077909--110077965	29	2.0	29	96	0	105	36	8	15	38	1.79
110078688--110078727	21	1.9	21	94	0	71	20	27	12	40	1.88
110084063--110084290	40	5.7	40	95	0	402	30	20	27	21	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349