genome.fa.s1.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  112  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35202677--35202860	27	6.8	27	82	5	212	41	21	9	27	1.84
35202872--35202923	27	1.9	27	88	7	79	40	13	11	34	1.81
35202964--35203037	27	2.7	27	76	12	71	37	20	20	21	1.94
35203852--35203921	25	2.8	25	93	0	113	25	27	22	24	2.00
35203851--35203934	25	3.4	24	83	8	98	28	23	22	25	1.99
35203852--35203946	50	1.9	50	80	8	113	27	25	23	24	2.00
35204068--35204159	42	2.2	42	90	0	139	30	14	21	33	1.93
35204183--35204297	31	3.7	31	97	1	214	27	17	26	27	1.98
35206613--35206645	13	2.6	13	90	4	50	48	12	0	39	1.40
35208222--35208479	46	5.5	45	81	9	243	24	31	17	27	1.97
35208222--35208479	140	1.8	140	85	3	358	24	31	17	27	1.97
35212532--35212808	127	2.2	127	92	1	450	45	4	9	40	1.56
35212532--35212911	127	3.0	126	82	8	390	45	4	9	40	1.58
35213983--35214148	40	4.2	40	90	0	253	25	27	22	24	2.00
35215578--35215620	14	3.1	14	80	6	52	58	9	2	30	1.42
35215578--35215616	13	2.9	13	84	3	51	58	10	2	28	1.44
35219770--35219860	33	2.8	33	91	0	137	23	26	21	28	1.99
35219773--35219873	33	3.2	31	84	6	100	20	24	25	28	1.99
35224677--35224725	24	2.0	24	84	7	64	32	0	16	51	1.45
35231647--35231698	26	2.0	26	100	0	104	38	34	11	15	1.83
35232092--35232119	13	2.2	13	100	0	56	39	0	0	60	0.97
35236870--35236951	42	2.0	42	87	4	121	19	30	30	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35239381--35239418	2	19.0	2	94	0	67	0	47	0	52	1.00
35242121--35242167	2	23.5	2	100	0	94	0	48	0	51	1.00
35243792--35243946	77	2.0	77	100	0	310	41	12	16	29	1.86
35245921--35245985	33	2.0	33	93	0	112	21	9	38	30	1.85
35250254--35250307	3	18.0	3	80	0	63	29	1	40	27	1.67
35258155--35258298	42	3.7	42	72	21	159	50	4	2	42	1.35
35258136--35258291	72	2.2	73	92	1	260	51	4	1	42	1.33
35258277--35258301	12	2.1	12	100	0	50	56	0	0	44	0.99
35262893--35263023	46	2.8	45	78	9	156	22	19	28	29	1.98
35265624--35265796	93	1.9	93	93	0	301	27	30	21	20	1.98
35265617--35265795	46	3.9	46	81	10	220	27	30	21	20	1.98
35267743--35267873	47	2.8	46	81	2	154	31	25	17	25	1.97
35285588--35285720	50	2.7	50	84	3	180	29	28	17	24	1.97
35288437--35288511	23	3.2	23	69	3	78	46	22	12	18	1.82
35291888--35292037	27	5.6	27	82	6	169	42	20	8	29	1.81
35291888--35292041	81	1.9	82	82	4	195	40	21	7	29	1.81
35291888--35292056	54	3.1	51	73	13	126	41	20	8	29	1.82
35292047--35292230	27	6.8	27	89	0	278	28	22	8	40	1.83
35291997--35292287	81	3.6	82	80	5	209	33	20	8	36	1.84
35292206--35292336	54	2.4	54	84	2	156	42	20	6	29	1.78
35292238--35292335	27	3.6	27	80	0	115	45	19	7	27	1.76
35292265--35292363	27	3.7	26	77	5	81	43	22	7	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35292348--35292597	27	9.3	27	91	0	374	34	19	22	23	1.97
35292317--35292598	54	5.2	54	88	3	345	35	19	20	24	1.96
35292577--35292639	27	2.3	27	77	0	72	20	19	22	38	1.94
35293002--35293066	25	2.6	25	87	0	85	18	18	15	47	1.82
35292999--35293080	6	13.3	6	69	19	53	19	17	14	48	1.81
35296978--35297112	51	2.7	49	79	4	155	28	28	18	23	1.98
35304603--35304774	43	4.0	43	81	7	206	30	25	16	27	1.97
35304601--35304773	86	2.0	86	88	0	256	30	26	16	27	1.96
35309753--35309930	27	6.6	27	83	3	205	26	15	28	29	1.96
35309754--35309909	82	1.9	81	88	3	233	26	15	28	29	1.96
35309750--35309930	82	2.2	81	83	2	229	27	15	27	29	1.96
35317970--35318147	27	6.6	27	83	3	205	26	15	28	29	1.96
35317971--35318126	82	1.9	81	88	3	233	26	15	28	29	1.96
35317967--35318147	82	2.2	81	83	2	229	27	15	27	29	1.96
35322261--35322324	28	2.3	28	88	0	101	35	7	26	29	1.85
35327704--35327829	46	2.7	46	92	0	207	30	27	21	20	1.98
35328252--35328311	30	2.0	30	86	0	84	31	23	8	36	1.84
35338605--35338636	16	2.0	16	93	0	55	34	18	0	46	1.49
35338846--35339229	50	7.6	50	78	5	389	29	25	18	27	1.98
35338838--35339230	101	3.9	100	78	7	341	29	25	18	27	1.98
35338940--35339023	26	3.3	26	61	15	66	30	23	17	27	1.97
35338838--35339230	151	2.6	151	93	0	651	29	25	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35339578--35339624	19	2.3	20	82	10	60	48	14	0	36	1.44
35342115--35342160	15	3.1	14	81	9	56	50	13	19	17	1.78
35344049--35344091	21	2.0	21	100	0	86	41	9	9	39	1.69
35344195--35344226	16	2.0	16	93	0	55	34	18	0	46	1.49
35344437--35344769	50	6.6	50	76	7	257	30	24	17	27	1.97
35344587--35344768	51	3.6	51	81	10	248	30	23	19	25	1.98
35344537--35344770	101	2.3	101	87	0	353	30	24	17	26	1.97
35345381--35345436	30	1.9	30	85	3	78	25	25	10	39	1.87
35351423--35351679	122	2.1	122	88	0	379	26	24	24	24	2.00
35351615--35351740	44	2.9	42	86	6	164	23	15	34	26	1.95
35351830--35351888	31	1.9	31	85	0	82	52	22	10	15	1.72
35353541--35353776	41	5.8	41	88	1	366	28	28	21	20	1.98
35353541--35353776	122	1.9	124	90	3	379	28	28	21	20	1.98
35361956--35362043	41	2.2	41	97	2	169	27	28	22	21	1.99
35367575--35367693	55	2.1	56	96	1	222	44	9	23	22	1.81
35424668--35424890	39	5.7	40	87	5	287	24	22	26	26	2.00
35424668--35424890	79	2.8	80	85	6	287	24	22	26	26	2.00
35424675--35424923	79	3.2	79	83	7	242	26	21	26	25	1.99
35427071--35427117	24	2.0	24	86	0	67	31	27	14	25	1.95
35440786--35440955	46	3.7	46	75	10	175	22	18	27	30	1.98
35440780--35440950	93	1.8	93	88	0	261	22	19	28	29	1.98
35454365--35454419	27	2.0	27	100	0	110	30	10	21	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35458976--35459052	31	2.5	31	89	0	118	15	32	28	23	1.95
35466937--35467076	27	5.2	28	91	2	200	33	22	23	20	1.97
35468267--35468321	25	2.3	22	76	14	56	63	0	34	1	1.05
35474781--35474890	27	4.0	28	78	5	118	35	19	24	20	1.96
35479232--35479261	7	4.3	7	91	0	51	53	26	3	16	1.59
35479615--35479741	50	2.6	51	82	5	145	39	22	16	22	1.92
35482597--35482656	30	2.0	30	86	0	84	30	23	8	38	1.84
35486084--35486129	18	2.6	18	96	0	83	50	10	17	21	1.77
35486451--35486673	80	2.8	80	84	2	286	34	17	17	30	1.93
35486510--35486636	53	2.4	54	74	5	123	37	14	17	30	1.90
35486496--35486640	27	5.4	27	68	8	93	35	17	15	31	1.91
35488840--35488984	40	3.6	40	86	4	202	23	26	24	26	2.00
35493060--35493097	20	1.9	20	88	0	58	52	13	2	31	1.54
35495667--35495772	52	2.0	52	96	0	194	29	6	15	49	1.69
35496325--35496359	18	1.9	18	88	0	52	51	14	11	22	1.74
35496687--35496801	27	4.3	27	68	2	70	36	17	20	26	1.94
35496684--35496901	79	2.7	80	86	3	305	37	17	16	28	1.92
35510205--35510442	50	4.7	50	83	1	296	31	26	18	23	1.97
35510216--35510446	101	2.3	100	86	0	309	31	26	18	23	1.97
35512895--35513019	22	5.4	23	88	5	173	28	19	16	36	1.93
35514348--35514385	14	2.5	16	87	8	53	42	2	21	34	1.67
35514692--35514869	50	3.6	49	79	7	180	26	17	26	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35517889--35517944	15	3.7	15	79	15	71	10	14	12	62	1.55
35520087--35520273	50	3.8	49	82	7	207	25	19	27	27	1.99
35522581--35522882	40	7.6	40	89	3	396	26	27	20	24	1.99
35530165--35530375	40	5.4	40	93	2	331	26	28	20	24	1.99
35534932--35535004	34	2.2	32	78	9	76	46	6	1	45	1.38
35534953--35535007	20	2.7	19	81	13	56	45	7	1	45	1.41
35535646--35535670	13	1.9	13	100	0	50	52	24	0	24	1.48
35541883--35542236	47	7.6	47	92	4	549	29	29	8	33	1.87
35541883--35542236	143	2.5	143	90	5	548	29	29	8	33	1.87
35546509--35546782	40	6.9	40	80	5	263	24	28	22	24	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349