genome.fa.s1.2.7.7.80.10.50.1000.292.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  292  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97868091--97868214	53	2.3	55	79	5	137	35	17	25	21	1.95
97868413--97868449	18	2.1	18	100	0	74	35	5	16	43	1.71
97868495--97868525	16	1.9	16	93	0	53	41	0	22	35	1.54
97871172--97871292	46	2.7	44	83	7	127	25	16	32	25	1.96
97884666--97884733	16	4.2	16	94	0	118	27	0	33	38	1.57
97884863--97885172	157	2.0	157	94	0	548	43	3	5	47	1.42
97884926--97885175	76	3.1	81	63	24	186	46	4	3	45	1.39
97884909--97885230	157	2.0	155	81	5	349	46	4	4	44	1.44
97886050--97886079	13	2.3	13	100	0	60	60	13	6	20	1.55
97889542--97889630	28	3.1	28	76	14	92	33	3	26	35	1.73
97889777--97889807	16	1.9	16	93	0	53	25	0	22	51	1.48
97892725--97892993	47	5.8	46	76	11	219	27	18	30	23	1.98
97892730--97892993	93	2.8	93	78	13	272	26	18	31	23	1.98
97895227--97895278	27	2.0	26	84	3	68	17	26	21	34	1.95
97902575--97902841	47	5.7	46	73	12	204	27	19	29	23	1.98
97902578--97902841	94	2.8	94	77	12	256	28	18	29	23	1.98
97905791--97905870	30	2.5	31	78	10	90	17	7	22	52	1.69
97908891--97908951	28	2.2	28	84	0	77	27	21	24	26	1.99
97909107--97909188	27	3.0	27	83	0	101	36	18	21	23	1.95
97910733--97910977	49	4.8	49	80	8	240	28	17	24	28	1.98
97913510--97913724	46	4.6	46	90	3	297	20	23	13	41	1.88
97913703--97913745	21	2.0	21	95	0	77	20	20	18	39	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97913657--97913791	67	2.0	67	97	0	252	23	22	15	37	1.93
97913611--97913833	113	2.0	113	96	0	410	23	23	14	38	1.92
97913724--97913854	46	2.8	46	96	0	235	26	22	12	37	1.91
97913565--97913854	159	1.8	159	92	0	490	23	23	13	39	1.91
97920284--97920375	27	3.4	27	80	1	96	36	18	21	22	1.95
97920510--97920575	27	2.5	26	80	7	78	25	18	16	39	1.91
97927178--97927204	13	2.1	13	100	0	54	0	22	0	77	0.76
97927276--97927308	5	6.8	5	93	6	59	57	0	0	42	0.98
97929684--97929741	26	2.2	26	84	0	71	41	10	15	32	1.81
97934771--97934807	18	2.1	18	89	0	56	45	16	5	32	1.70
97934924--97934964	20	2.0	20	100	0	82	39	9	4	46	1.58
97935154--97935189	16	2.2	16	100	0	72	47	13	0	38	1.44
97941079--97941110	16	1.9	17	93	6	57	56	15	21	6	1.62
97941535--97941601	27	2.5	27	85	0	89	43	16	16	23	1.87
97941586--97941690	27	3.9	27	81	5	131	28	15	17	39	1.90
97941981--97942035	18	3.1	18	89	0	74	25	23	10	40	1.87
97947119--97947241	47	2.6	45	75	9	122	28	15	29	26	1.96
97947116--97947386	92	2.9	94	76	12	231	26	16	29	26	1.97
97954497--97954682	45	4.1	45	92	0	255	24	21	11	42	1.86
97958934--97958971	20	1.9	20	84	10	51	42	13	23	21	1.88
97960872--97961191	46	7.0	46	93	0	498	39	15	22	22	1.91
97962887--97962952	27	2.4	27	74	0	69	19	24	18	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
97963026--97963200	45	3.8	45	77	5	190	23	22	10	42	1.85
97964646--97964674	4	7.2	4	100	0	58	48	0	0	51	1.00
97973002--97973141	68	2.1	68	94	0	244	35	17	24	22	1.96
97978300--97978355	30	1.9	28	85	7	76	53	3	30	12	1.55
97984656--97984681	13	2.0	13	100	0	52	23	38	23	15	1.92
97993909--97993936	10	2.8	10	100	0	56	21	32	10	35	1.88
98001400--98001565	56	2.9	56	84	1	224	29	15	24	30	1.96
98002777--98003115	168	2.0	168	97	0	642	31	7	22	38	1.82
98005388--98005593	40	5.2	40	78	4	211	25	25	23	25	2.00
98017772--98018114	50	6.9	50	89	7	518	36	6	25	31	1.82
98017765--98018114	102	3.5	99	92	3	519	36	6	25	31	1.81
98018265--98018374	37	3.0	37	90	0	175	23	19	29	28	1.98
98019628--98019986	40	9.0	40	85	0	484	23	20	28	28	1.99
98019628--98019974	80	4.3	80	93	0	561	23	20	28	27	1.99
98020150--98020200	25	2.0	25	81	7	59	33	13	31	21	1.92
98022536--98022684	50	3.0	50	94	3	275	37	6	24	31	1.80
98022529--98022906	98	4.1	96	76	18	411	36	6	25	31	1.81
98022529--98022906	48	8.1	48	78	16	411	36	6	25	31	1.81
98022656--98022711	29	1.9	29	92	7	96	39	7	19	33	1.79
98022558--98022813	129	2.0	127	94	4	453	37	6	24	31	1.81
98023055--98023163	37	2.9	37	93	0	173	22	17	31	28	1.97
98030565--98030749	40	4.6	40	79	12	186	25	27	22	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98030567--98030749	79	2.3	80	81	10	205	25	27	22	24	2.00
98031876--98032051	56	3.2	56	95	2	311	22	24	8	44	1.81
98034729--98034805	39	2.0	39	87	5	111	25	24	18	31	1.97
98037486--98037532	24	1.9	24	82	4	58	42	19	23	14	1.88
98038434--98038495	31	2.0	31	100	0	124	29	16	19	35	1.93
98038818--98038855	17	2.2	17	90	0	58	21	5	5	68	1.29
98047394--98047488	41	2.3	41	92	0	154	34	24	16	24	1.95
98047400--98047498	41	2.4	41	89	0	144	34	26	15	24	1.94
98048690--98048750	32	1.9	32	87	9	90	50	8	0	40	1.32
98053257--98053364	27	3.9	27	82	10	121	36	21	25	16	1.94
98053255--98053364	55	2.0	54	84	5	141	36	20	26	16	1.94
98054799--98054872	24	3.1	24	92	0	121	22	40	4	32	1.73
98059501--98059577	31	2.3	33	80	17	88	53	7	0	38	1.30
98059519--98059579	31	1.9	32	90	9	99	52	6	0	40	1.27
98059656--98059724	15	4.5	14	76	16	66	57	2	1	37	1.22
98059689--98059723	3	11.7	3	100	0	70	65	0	0	34	0.93
98065524--98065838	46	6.7	47	73	13	186	28	18	28	25	1.98
98071118--98071189	21	3.3	21	68	3	54	34	23	25	16	1.95
98072421--98072494	31	2.4	31	93	2	123	28	25	0	45	1.53
98072730--98072775	18	2.7	18	80	9	53	4	19	2	73	1.10
98076317--98076707	46	8.5	46	85	3	457	21	23	13	41	1.89
98081645--98081818	46	3.7	46	82	6	199	27	16	31	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98087871--98087938	34	2.0	34	85	2	93	44	0	1	54	1.09
98088155--98088207	21	2.5	21	84	0	61	33	35	3	26	1.75
98090815--98090876	31	2.0	31	100	0	124	35	25	16	22	1.94
98091534--98091571	19	2.0	19	94	0	67	34	10	23	31	1.89
98100148--98100190	14	2.9	14	86	13	52	74	4	6	13	1.19
98101550--98101613	31	2.1	30	88	8	94	25	3	14	57	1.51
98105972--98106012	6	6.5	6	83	10	55	17	2	2	78	0.98
98106041--98106076	18	2.0	18	94	0	63	13	2	44	38	1.59
98106281--98106610	102	3.2	102	98	0	633	35	9	20	35	1.84
98112388--98112580	37	5.2	37	90	0	287	26	32	16	24	1.96
98112732--98113011	47	6.0	47	92	0	434	26	29	12	32	1.92
98112768--98112843	23	3.2	25	63	24	63	22	34	14	28	1.93
98112817--98112939	22	5.3	22	63	24	65	25	28	13	32	1.94
98117067--98117124	27	2.1	27	96	0	107	37	10	20	31	1.86
98118925--98118979	27	2.0	27	96	0	101	36	16	0	47	1.47
98119399--98119559	35	4.6	34	84	4	187	34	26	9	29	1.88
98119398--98119551	70	2.2	70	89	0	227	35	25	9	29	1.87
98128981--98129207	40	5.7	40	90	3	323	17	20	28	33	1.95
98130117--98130242	35	3.6	35	90	0	198	30	26	11	30	1.92
98132349--98132437	35	2.6	35	78	5	101	14	10	34	40	1.80
98135165--98135206	17	2.5	17	84	7	50	59	14	2	23	1.47
98139935--98139977	19	2.5	17	82	14	52	23	41	25	9	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98146960--98147067	20	5.8	18	70	19	62	51	3	1	42	1.30
98152272--98152493	49	4.7	49	77	7	179	25	20	29	24	1.99
98152269--98152447	93	1.9	92	85	3	243	24	19	31	24	1.98
98152319--98152543	93	2.4	91	78	10	213	25	18	29	26	1.98
98156222--98156404	66	2.8	64	77	9	194	30	17	29	22	1.97
98161328--98161414	42	2.1	42	100	0	174	44	4	13	36	1.65
98164033--98164073	21	2.0	21	95	0	73	43	9	12	34	1.75
98168089--98168129	16	2.5	17	88	4	57	34	14	2	48	1.57
98171083--98171193	54	2.0	55	98	1	215	30	26	9	34	1.87
98182273--98182328	27	2.1	27	100	0	112	44	3	3	48	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349