Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  129  of  349  ( 41854 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41194706--41194890
40
4.7
40
82
7
218
23
22
28
25
2.00
41194706--41194888
79
2.3
81
85
7
241
24
22
27
25
2.00
41194707--41194923
79
2.7
78
79
12
237
25
22
27
24
2.00
41195876--41195916
16
2.6
16
88
0
55
17
9
2
70
1.25
41197514--41197548
5
6.8
5
93
6
61
17
0
0
82
0.66
41197514--41197549
16
2.2
16
100
0
72
16
0
0
83
0.65
41204492--41204548
6
9.3
6
79
11
53
71
0
12
15
1.13
41204490--41204545
18
3.1
18
82
12
69
71
0
10
17
1.14
41204697--41204766
26
2.7
26
88
0
104
35
10
18
35
1.84
41237305--41237602
40
7.5
40
91
1
449
24
27
25
23
2.00
41245496--41245760
40
6.6
40
92
1
426
25
27
25
21
2.00
41257056--41257095
21
2.0
20
85
14
55
25
37
22
15
1.93
41258322--41258365
23
2.0
23
86
4
63
34
22
15
27
1.95
41267721--41267757
16
2.2
17
90
4
58
16
2
8
72
1.19
41269373--41269739
47
7.8
46
73
12
225
27
20
29
22
1.98
41269374--41269739
94
3.9
93
79
9
386
27
20
30
21
1.98
41269376--41269739
141
2.6
138
80
9
389
27
20
29
21
1.98
41277164--41277208
22
2.0
22
91
0
72
28
11
15
44
1.81
41280168--41280218
25
2.0
25
84
0
66
43
0
0
56
0.99
41280161--41280271
59
1.9
55
89
7
168
46
0
0
52
1.06
41280204--41280256
23
2.3
22
78
9
61
49
0
1
49
1.12
41280463--41280500
16
2.4
16
95
0
67
34
26
0
39
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41281722--41281756
11
3.1
11
84
8
52
28
0
2
68
1.04
41293365--41293429
29
2.2
31
83
5
80
58
0
0
41
0.98
41295681--41295792
15
7.8
15
67
16
58
25
8
1
63
1.34
41296057--41296129
16
4.4
16
79
8
67
34
4
1
60
1.24
41296057--41296129
32
2.2
34
81
13
82
34
4
1
60
1.24
41296105--41296205
23
4.7
22
73
16
86
35
2
2
58
1.28
41296143--41296225
20
4.1
20
76
16
64
33
3
7
55
1.45
41296095--41296225
42
3.1
41
79
10
115
33
2
5
58
1.33
41300782--41301999
407
3.0
405
86
3
1623
38
12
17
31
1.86
41305164--41305204
18
2.2
18
86
4
55
73
0
2
24
0.96
41307372--41307571
68
2.9
69
78
5
165
33
18
26
22
1.96
41309961--41310050
45
2.0
45
100
0
180
22
6
11
60
1.54
41310843--41310895
24
2.2
24
96
0
97
32
0
15
52
1.42
41311807--41311852
22
2.1
22
95
0
83
30
4
28
36
1.76
41312125--41312164
20
2.0
20
90
0
62
30
2
10
57
1.45
41312873--41312962
46
2.0
45
84
6
119
34
6
12
46
1.67
41316310--41316363
24
2.2
24
96
0
99
70
3
22
3
1.19
41316294--41316379
26
3.3
26
72
20
72
72
2
23
2
1.08
41319781--41319958
48
3.7
48
89
0
257
25
18
28
28
1.98
41325715--41325805
46
2.0
45
91
6
148
32
10
13
42
1.79
41330080--41330110
16
1.9
16
100
0
62
38
6
6
48
1.55
41330289--41330345
22
2.6
22
80
5
53
35
3
5
56
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41330561--41330635
22
3.3
21
77
18
64
33
4
5
57
1.40
41330586--41330731
24
5.8
24
65
23
70
34
8
4
52
1.52
41330588--41330639
21
2.5
21
81
15
63
34
3
1
59
1.27
41335329--41335501
46
3.8
45
76
10
188
22
21
27
28
1.99
41335325--41335496
93
1.8
93
92
0
290
22
21
29
27
1.99
41337960--41338358
176
2.4
162
85
11
572
29
17
19
34
1.94
41338016--41338373
88
4.1
88
95
1
616
27
17
17
37
1.92
41338016--41338628
176
3.4
176
80
14
663
28
16
16
37
1.91
41338350--41338384
14
2.5
14
90
0
52
20
17
2
60
1.49
41338271--41338579
100
3.1
98
81
12
364
27
16
15
41
1.88
41339038--41339348
153
2.0
153
98
0
595
42
36
2
18
1.64
41340886--41340931
23
2.0
23
83
8
58
69
4
2
23
1.17
41341119--41341216
3
32.7
3
69
19
62
61
2
8
28
1.36
41341165--41341210
12
3.8
12
91
2
74
65
0
6
28
1.17
41341166--41341216
19
2.7
19
80
19
63
64
0
5
29
1.17
41341213--41341269
21
2.6
22
74
17
57
61
5
3
29
1.35
41341226--41341269
23
2.0
22
90
4
70
59
4
2
34
1.30
41341401--41341451
9
5.6
9
79
11
59
56
0
3
39
1.18
41341401--41341445
18
2.5
19
89
7
67
55
0
4
40
1.20
41343458--41343488
16
1.9
16
100
0
62
38
6
6
48
1.55
41343667--41343723
22
2.6
22
80
5
53
35
3
5
56
1.39
41343938--41344012
22
3.3
21
77
18
64
33
4
5
57
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41343963--41344076
26
4.7
24
69
23
69
33
9
3
53
1.51
41343965--41344016
21
2.5
21
81
15
63
34
3
1
59
1.27
41344155--41344230
31
2.5
29
76
17
75
31
5
2
60
1.33
41344331--41344359
11
2.7
11
94
5
51
37
0
6
55
1.27
41352635--41352681
21
2.2
22
85
11
62
42
8
0
48
1.33
41355079--41355143
32
2.0
32
96
0
121
36
21
12
29
1.90
41355985--41356025
18
2.3
18
100
0
82
51
17
7
24
1.70
41359235--41359281
22
2.2
20
85
14
60
53
0
2
44
1.12
41366763--41366806
22
2.0
22
86
8
63
54
4
2
38
1.33
41366789--41366842
27
2.0
27
82
7
65
46
3
5
44
1.44
41368178--41368205
14
2.0
14
100
0
56
14
7
57
21
1.61
41370976--41371027
19
2.6
21
78
12
63
23
9
3
63
1.41
41381542--41381579
19
2.0
19
85
10
51
68
0
10
21
1.19
41381630--41381776
72
2.0
72
98
0
285
33
17
17
31
1.94
41382863--41382890
13
2.2
13
100
0
56
17
35
32
14
1.90
41383364--41383395
16
2.0
16
100
0
64
37
31
6
25
1.81
41387033--41387080
21
2.2
21
80
20
55
35
4
4
56
1.38
41388994--41389023
13
2.4
13
94
5
53
33
0
0
66
0.92
41389537--41389575
6
6.5
6
96
0
69
0
66
0
33
0.92
41394089--41394119
15
2.1
15
100
0
62
35
19
0
45
1.51
41397514--41397691
27
6.6
27
83
3
196
29
28
15
27
1.96
41397535--41397690
82
1.9
81
86
3
224
28
28
15
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41405404--41405581
27
6.6
27
84
3
205
29
28
15
26
1.96
41405425--41405580
82
1.9
81
88
3
233
29
28
15
26
1.96
41407360--41407386
11
2.5
11
100
0
54
22
7
18
51
1.70
41408787--41408981
93
2.1
92
88
4
286
44
4
4
47
1.41
41409014--41409047
17
2.0
17
94
0
59
44
5
0
50
1.26
41409014--41409052
17
2.4
16
87
8
53
43
5
0
51
1.24
41409018--41409057
17
2.3
18
83
12
57
47
5
0
47
1.24
41409137--41409271
15
8.9
15
67
24
70
42
2
3
51
1.32
41409013--41409231
120
1.8
119
89
6
345
40
3
5
50
1.44
41409239--41409280
15
2.7
16
82
14
52
45
0
2
52
1.13
41409230--41409527
154
1.9
156
95
2
546
47
5
3
44
1.41
41409380--41409414
18
2.0
17
88
5
52
45
0
0
54
0.99
41409647--41409685
16
2.4
16
86
0
51
28
33
2
35
1.71
41409660--41409716
16
3.6
16
95
0
87
33
36
0
29
1.58
41411410--41411436
11
2.5
11
100
0
54
29
0
7
62
1.22
41411411--41411453
21
2.0
21
86
0
59
37
0
4
58
1.19
41411439--41411499
27
2.3
27
82
2
79
37
0
4
57
1.20
41411738--41411771
13
2.8
12
91
8
59
29
0
0
70
0.87
41412276--41412309
3
11.7
3
93
6
61
67
32
0
0
0.91
41421839--41421940
42
2.4
42
91
0
177
22
23
24
29
1.99
41423633--41423691
28
2.1
28
83
0
73
25
27
15
32
1.95
41425153--41425190
18
2.1
18
100
0
76
39
0
26
34
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41428761--41428899
68
2.1
67
78
10
151
41
5
3
50
1.42
41428758--41428846
37
2.3
38
81
11
101
40
4
3
51
1.39
41429386--41429433
22
2.2
23
85
7
64
70
4
0
25
1.04
41429464--41429499
15
2.4
15
100
0
72
50
5
22
22
1.70
41430411--41430470
29
2.1
29
87
0
84
50
10
11
28
1.71
41430496--41430542
24
2.0
24
87
8
69
25
6
2
65
1.27
41447989--41448055
25
2.7
25
81
9
82
26
20
22
29
1.99
41448669--41448791
45
2.7
45
80
0
138
37
17
20
24
1.94
41449741--41449766
13
2.0
13
100
0
52
7
7
46
38
1.61
41455118--41455149
14
2.3
14
100
0
64
31
6
0
62
1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349