genome.fa.s1.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  149  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47430140--47430240	50	2.0	50	100	0	202	39	15	16	27	1.90
47432057--47432119	31	2.0	31	100	0	126	49	19	6	25	1.71
47433684--47433724	20	2.0	20	100	0	82	19	31	4	43	1.72
47435607--47435782	46	3.8	46	76	4	174	30	29	19	21	1.97
47435614--47435786	93	1.9	93	90	0	274	28	30	19	21	1.98
47439095--47439164	24	2.9	25	79	10	83	32	20	27	20	1.97
47443971--47444009	20	2.0	20	89	0	60	12	25	38	23	1.90
47450635--47450811	50	3.5	50	93	2	284	35	15	22	26	1.94
47450787--47450873	31	2.8	31	96	0	156	26	18	28	26	1.98
47450899--47451063	47	3.7	43	83	11	174	29	15	25	29	1.96
47450902--47451106	42	4.7	43	77	13	170	30	14	25	29	1.95
47452403--47452442	20	2.0	20	100	0	80	20	30	5	45	1.72
47455031--47455101	24	3.0	24	80	11	85	35	19	25	19	1.96
47460940--47461047	26	4.2	26	96	0	198	36	27	6	29	1.82
47462979--47463019	20	2.0	20	95	0	73	9	26	41	21	1.84
47470733--47470908	51	3.5	48	78	8	183	24	19	25	30	1.98
47474835--47474877	16	2.7	16	92	0	77	41	16	23	18	1.89
47477380--47477404	13	1.9	13	100	0	50	32	20	16	32	1.94
47477951--47478128	27	6.6	27	82	5	191	27	15	28	29	1.96
47477953--47478102	82	1.9	80	87	5	221	27	16	28	28	1.97
47477949--47478128	82	2.2	80	80	5	211	27	15	27	29	1.96
47485261--47485285	13	1.9	13	100	0	50	32	20	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47485823--47486001	27	6.6	27	82	6	191	27	15	27	29	1.96
47485825--47485975	82	1.9	81	87	4	223	27	15	27	28	1.96
47485821--47486001	82	2.2	81	80	4	213	28	14	27	29	1.96
47493119--47493143	13	1.9	13	100	0	50	32	20	16	32	1.94
47493691--47493869	27	6.6	27	82	6	191	27	15	27	29	1.96
47493693--47493843	82	1.9	81	87	4	223	27	15	27	28	1.96
47493689--47493869	82	2.2	81	80	4	213	28	14	27	29	1.96
47500454--47500551	29	3.4	29	76	0	106	35	17	28	18	1.93
47503307--47503384	29	2.8	28	73	21	72	24	14	34	26	1.93
47517541--47517575	17	2.1	17	88	0	52	20	5	8	65	1.40
47520060--47520168	43	2.6	42	79	5	121	28	24	16	30	1.97
47523036--47523349	27	11.6	27	81	1	317	40	19	8	31	1.81
47523036--47523349	54	5.8	54	84	2	353	40	19	8	31	1.81
47523085--47523403	81	3.9	81	76	12	199	38	20	8	32	1.82
47523279--47523403	27	4.6	27	73	5	101	37	21	9	31	1.86
47523395--47523580	54	3.5	54	88	2	250	34	18	20	25	1.96
47523386--47523578	81	2.4	80	84	1	253	35	18	20	25	1.95
47523386--47523582	27	7.3	27	83	3	218	35	19	19	25	1.96
47523808--47523955	73	2.0	73	90	0	233	20	27	21	31	1.98
47524106--47524227	25	5.0	23	73	16	93	18	16	14	50	1.79
47524115--47524182	31	2.2	31	86	0	91	20	16	13	50	1.78
47524103--47524239	6	22.3	6	71	15	93	18	16	14	50	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47524126--47524237	43	2.6	43	89	0	170	18	16	15	50	1.79
47528321--47528561	47	5.1	47	88	3	340	31	9	31	27	1.89
47528679--47528757	37	2.1	37	88	0	113	25	18	30	25	1.98
47530620--47530722	43	2.4	43	98	0	197	23	15	34	26	1.94
47530704--47530777	29	2.6	29	89	4	105	25	16	32	25	1.96
47531088--47531230	40	3.6	40	85	3	171	24	21	27	26	1.99
47531407--47531457	25	2.0	25	85	7	68	29	7	33	29	1.85
47534939--47535553	47	13.1	47	92	4	1001	32	8	30	28	1.87
47534941--47535553	189	3.3	188	94	3	1031	31	8	30	28	1.87
47534939--47535553	142	4.4	141	92	4	1003	32	8	30	28	1.87
47535672--47535750	37	2.1	37	90	0	122	24	18	31	25	1.98
47542657--47542781	45	2.9	42	82	10	121	24	26	23	25	2.00
47543177--47543373	38	5.1	38	84	4	243	31	24	20	22	1.98
47548902--47548974	37	2.0	37	100	0	146	43	19	5	31	1.73
47549544--47549655	43	2.6	42	81	5	136	28	22	16	32	1.96
47550934--47550999	29	2.3	29	83	0	87	22	22	18	36	1.95
47550976--47551133	29	5.4	29	73	8	115	29	25	10	35	1.88
47550947--47551147	87	2.3	87	84	3	269	26	24	12	35	1.91
47553917--47553959	21	2.0	21	95	0	77	25	16	13	44	1.85
47555322--47555385	33	2.0	32	84	3	83	37	18	20	23	1.94
47555285--47555550	98	2.7	99	95	2	473	33	21	24	20	1.97
47562799--47562908	27	4.0	27	71	10	87	35	20	22	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47562817--47562907	27	3.2	28	75	11	89	35	21	23	19	1.96
47577009--47577077	29	2.4	29	95	0	120	18	28	11	40	1.86
47576997--47577137	29	4.9	29	79	3	113	25	24	12	36	1.91
47578045--47578071	14	1.9	14	100	0	54	37	14	11	37	1.82
47582872--47582922	26	2.0	26	84	7	68	33	19	17	29	1.95
47590370--47590434	34	1.9	34	84	6	87	24	23	23	29	1.99
47593123--47593202	28	2.8	28	83	7	99	28	33	15	22	1.94
47593268--47593302	17	2.0	18	88	5	54	20	34	22	22	1.97
47593422--47593472	16	3.2	16	82	0	66	7	21	23	47	1.77
47595533--47595704	40	4.3	40	94	2	267	26	27	21	23	1.99
47595533--47595757	80	2.8	80	85	4	276	26	27	22	24	2.00
47595533--47595757	119	1.9	120	82	6	287	26	27	22	24	2.00
47596221--47596393	56	3.1	56	99	0	337	22	24	8	44	1.81
47602731--47602988	40	6.5	40	84	5	274	26	26	21	25	1.99
47602731--47602988	119	2.2	120	81	5	292	26	26	21	25	1.99
47603454--47603573	56	2.1	56	96	0	222	22	22	10	45	1.82
47619067--47619107	21	2.0	21	85	4	57	48	26	0	24	1.51
47622236--47622300	32	2.0	32	96	0	121	30	9	15	44	1.78
47626206--47626494	157	1.8	157	87	1	436	37	19	11	31	1.88
47632254--47632285	16	2.0	16	93	0	55	50	21	6	21	1.71
47633643--47633750	29	3.8	29	85	6	148	27	16	27	27	1.97
47634820--47634853	18	1.9	18	88	5	52	41	20	8	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47636641--47636697	8	7.1	8	79	0	69	54	28	3	14	1.56
47636641--47636706	16	4.1	16	90	0	96	51	28	4	15	1.63
47638064--47638171	29	3.8	29	84	6	139	27	16	26	28	1.97
47638064--47638174	58	1.9	57	85	8	154	27	16	27	28	1.97
47640135--47640194	27	2.3	26	85	2	75	35	20	23	21	1.96
47652650--47652722	27	2.7	27	76	0	74	30	20	15	34	1.93
47653003--47653049	14	3.2	14	81	6	58	42	25	6	25	1.78
47656272--47656370	34	2.9	34	80	7	103	28	22	21	28	1.99
47660184--47660549	46	8.0	46	92	0	554	23	24	15	37	1.93
47662915--47662982	30	2.3	30	84	5	84	27	19	5	47	1.72
47664400--47664467	29	2.3	30	87	5	93	29	17	5	47	1.71
47668860--47668913	26	2.1	26	85	0	72	37	24	24	14	1.93
47668968--47669037	32	2.2	32	81	0	77	31	20	24	24	1.98
47669087--47669195	43	2.5	43	83	0	137	28	31	20	20	1.97
47669492--47669597	27	4.0	27	79	7	108	31	11	19	37	1.87
47675808--47675860	22	2.5	20	74	11	52	73	9	5	11	1.24
47676671--47676718	19	2.4	21	86	6	64	66	6	4	22	1.32
47676757--47676800	18	2.4	19	81	14	56	68	0	4	27	1.09
47693332--47693598	38	6.3	38	69	21	156	29	16	24	29	1.96
47693366--47693577	47	4.7	47	79	10	244	30	16	23	30	1.96
47693409--47693598	85	2.2	85	95	0	344	30	16	23	29	1.96
47696009--47696050	15	2.8	15	88	0	66	16	16	14	52	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47698542--47698869	38	7.9	38	71	17	224	30	15	24	29	1.96
47698568--47698661	48	2.0	48	91	0	152	34	15	21	28	1.94
47698542--47698862	85	3.8	85	88	0	471	30	15	24	29	1.96
47710619--47710659	21	2.0	21	90	4	66	58	0	7	34	1.26
47711121--47711158	20	2.0	20	89	5	60	42	5	10	42	1.62
47719501--47719525	13	1.9	13	100	0	50	28	0	0	72	0.86
47720343--47720380	19	2.0	20	85	15	53	39	23	0	36	1.55
47720603--47720777	46	3.8	45	77	10	183	29	28	20	22	1.98
47720610--47720780	93	1.8	93	89	0	270	28	28	20	22	1.98
47722722--47722771	17	2.9	17	72	0	55	22	18	20	40	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349