genome.fa.s1.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A01
Parameters: 2 7 7 80 10 50 1000
Length:  115637255

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   

This is table  131  of  349  ( 41854 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41767278--41767545	81	3.3	80	79	7	290	39	7	21	32	1.80
41767525--41767589	27	2.4	27	86	0	94	32	10	18	38	1.85
41767499--41767774	81	3.4	80	83	3	311	31	7	20	39	1.81
41767511--41767774	54	4.9	54	82	2	278	31	8	20	39	1.82
41767568--41767774	27	7.6	27	88	1	261	31	7	20	40	1.80
41768600--41768732	48	2.8	48	82	0	149	28	20	29	21	1.98
41772609--41772863	39	6.5	39	91	2	388	19	23	29	28	1.98
41778844--41779020	40	4.5	40	92	3	279	23	23	27	25	2.00
41782425--41782606	79	2.3	80	84	6	237	25	28	22	24	2.00
41782404--41782606	39	5.1	40	81	9	229	25	28	22	24	1.99
41783735--41783854	56	2.1	56	98	0	231	22	23	9	45	1.81
41790318--41790499	78	2.3	81	83	8	223	24	28	23	24	2.00
41790297--41790499	40	5.1	40	81	9	229	24	28	22	24	2.00
41791635--41791754	56	2.1	56	98	0	231	22	23	9	45	1.81
41793510--41793764	39	6.5	39	90	1	386	19	23	28	28	1.98
41796518--41797095	47	12.4	47	88	6	849	33	8	29	28	1.87
41800012--41800038	13	2.1	13	100	0	54	37	0	22	40	1.54
41804193--41804369	39	4.5	39	84	2	221	19	23	27	30	1.98
41816826--41816988	42	3.9	42	75	4	159	29	15	28	26	1.96
41816835--41816988	84	1.8	84	85	2	220	29	16	28	25	1.97
41820534--41820876	161	2.1	161	91	0	544	39	19	9	31	1.84
41820534--41820874	27	12.7	27	79	8	340	39	19	9	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41820858--41821346	27	18.1	27	84	1	532	38	17	17	26	1.93
41821573--41821652	27	3.0	26	88	3	106	20	22	21	36	1.95
41821707--41821944	98	2.4	98	88	0	341	19	17	27	35	1.94
41824261--41824578	27	11.8	26	74	10	221	38	19	11	31	1.86
41824238--41824603	54	6.8	54	77	4	330	39	18	10	31	1.86
41824233--41824522	107	2.7	107	80	4	291	39	19	10	31	1.85
41824452--41824603	27	5.7	27	78	2	128	39	14	11	34	1.83
41824261--41824576	161	2.0	161	91	1	508	38	18	11	31	1.86
41824562--41825055	27	18.3	27	81	4	404	38	17	17	26	1.92
41824291--41824620	81	4.1	81	74	12	243	39	17	11	31	1.86
41824570--41825054	81	6.0	81	82	2	497	38	17	17	26	1.92
41824562--41825055	54	9.1	54	80	2	454	38	17	17	26	1.92
41825279--41825361	27	3.1	26	82	5	103	21	22	19	36	1.95
41825490--41825530	20	2.0	20	90	0	64	14	14	29	41	1.86
41825412--41825650	98	2.4	98	90	0	370	18	17	27	35	1.94
41825574--41825619	20	2.3	20	80	0	56	13	10	32	43	1.78
41825675--41825752	27	2.9	27	81	5	79	19	21	20	38	1.94
41827887--41828024	56	2.5	55	83	9	156	26	31	15	26	1.96
41827887--41828037	29	5.4	29	83	7	161	26	30	15	27	1.96
41828248--41828282	8	4.4	8	85	0	52	5	22	20	51	1.68
41834188--41834304	29	4.0	29	87	2	137	28	31	14	25	1.95
41839902--41839926	13	1.9	13	100	0	50	52	16	8	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41840902--41841158	130	2.0	130	99	0	505	36	17	14	31	1.90
41846226--41846299	25	3.2	25	61	28	63	35	21	8	35	1.83
41846218--41846327	44	2.5	44	96	0	202	32	23	10	33	1.88
41870364--41870394	13	2.4	13	100	0	62	25	22	16	35	1.94
41875165--41875271	28	3.8	28	73	7	92	26	27	18	28	1.98
41875229--41875286	28	2.1	28	83	6	73	22	34	18	24	1.96
41880787--41880846	20	3.3	19	86	13	83	35	11	20	33	1.88
41880791--41880842	16	3.3	16	86	10	72	36	13	19	30	1.90
41880892--41880997	24	4.4	24	95	1	185	30	19	20	29	1.97
41885083--41885507	48	8.9	48	96	0	778	34	6	28	31	1.82
41885648--41885750	37	2.8	37	95	0	179	23	19	32	25	1.98
41892059--41892321	40	6.6	40	87	3	309	24	20	27	27	1.99
41896008--41896040	16	2.1	16	100	0	66	36	12	18	33	1.88
41896089--41896213	24	5.2	24	93	1	207	29	21	20	28	1.98
41899905--41900122	40	5.5	40	91	1	323	25	29	22	23	1.99
41907828--41908084	40	6.5	40	93	2	421	25	28	22	23	2.00
41912667--41912817	28	5.4	28	92	1	232	33	27	11	26	1.92
41915141--41915197	26	2.2	26	83	3	69	26	19	19	35	1.95
41917456--41917499	19	2.4	18	85	7	54	40	9	0	50	1.34
41919673--41919761	38	2.3	38	98	0	169	24	41	17	15	1.89
41919934--41919990	26	2.2	26	83	3	69	28	17	19	35	1.94
41920708--41920753	21	2.2	21	100	0	92	10	41	19	28	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41922235--41922259	3	8.3	3	100	0	50	64	0	0	36	0.94
41922990--41923087	28	3.5	28	79	10	119	23	28	19	28	1.98
41922955--41923116	56	2.9	55	83	10	195	24	30	17	27	1.97
41922981--41923115	28	4.8	28	73	13	109	22	31	18	28	1.97
41930859--41930907	20	2.5	20	86	0	71	12	28	22	36	1.90
41930972--41931010	20	1.9	20	84	5	51	7	23	15	53	1.67
41950602--41951098	55	9.5	54	71	14	344	24	23	16	35	1.94
41950602--41951098	101	4.7	108	84	5	483	24	23	16	35	1.94
41950885--41951211	47	6.6	47	71	16	239	26	23	14	34	1.94
41950830--41951164	101	3.3	101	92	1	535	25	23	14	36	1.93
41951351--41951434	44	1.9	44	82	0	105	23	23	14	38	1.92
41954575--41954795	40	5.6	40	86	4	297	26	26	22	24	2.00
41956040--41956119	41	2.0	40	90	2	124	31	27	5	36	1.78
41961096--41961404	53	5.7	53	79	7	261	23	24	16	35	1.95
41961108--41961505	55	7.5	53	75	13	329	23	24	16	35	1.95
41961108--41961505	108	3.8	108	86	5	480	23	24	16	35	1.95
41961395--41961566	47	3.5	46	71	18	150	26	22	14	36	1.93
41961133--41961566	101	4.2	101	86	6	409	24	23	15	35	1.94
41965790--41966150	49	7.5	48	94	1	586	32	8	29	29	1.87
41966269--41966347	37	2.1	37	90	0	122	24	18	31	25	1.98
41970188--41970406	6	36.0	6	73	17	177	47	14	17	19	1.82
41970165--41970406	55	4.3	56	83	10	257	49	13	16	20	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41970185--41970371	85	2.3	81	91	5	306	48	14	16	19	1.81
41970165--41970381	85	2.7	79	83	9	285	49	13	16	20	1.79
41970524--41970589	27	2.5	26	85	7	87	37	22	22	16	1.93
41970524--41970597	27	2.8	27	78	13	82	36	21	24	17	1.95
41970548--41970605	27	2.1	27	84	6	73	36	27	20	15	1.93
41970762--41970820	22	2.7	22	81	0	64	32	22	25	20	1.98
41970908--41970990	27	3.1	26	86	5	103	38	21	20	19	1.93
41971189--41971357	27	6.3	27	84	0	194	26	18	18	36	1.94
41971188--41971338	54	2.8	54	86	4	214	25	19	17	36	1.94
41971362--41971636	27	10.2	27	82	6	342	40	10	22	26	1.86
41971362--41971636	81	3.4	81	86	5	394	40	10	22	26	1.86
41974803--41975260	47	9.6	47	91	2	711	32	8	29	28	1.87
41974803--41975260	143	3.2	143	91	2	728	32	8	29	28	1.87
41974803--41975260	190	2.4	189	92	1	754	32	8	29	28	1.87
41975379--41975457	37	2.1	37	88	0	113	24	17	32	25	1.97
41977438--41977676	6	39.3	6	73	17	174	48	12	17	20	1.80
41977438--41977676	55	4.2	56	82	10	251	48	12	17	20	1.80
41977438--41977644	85	2.5	81	89	4	310	49	13	16	21	1.79
41977821--41977878	27	2.1	27	84	6	73	36	27	20	15	1.93
41978184--41978263	27	3.0	26	88	3	106	36	21	22	20	1.95
41978462--41978630	27	6.3	27	85	0	185	25	19	18	36	1.94
41978461--41978618	54	2.9	54	85	3	219	25	19	18	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41978635--41978961	27	12.1	27	85	2	388	40	8	21	28	1.83
41984512--41984672	42	3.8	42	75	5	128	24	18	23	33	1.96
41989599--41989623	13	1.9	13	100	0	50	40	24	4	32	1.73
41994487--41994626	51	2.7	51	84	4	158	28	30	16	25	1.97
41994516--41994769	51	5.0	51	78	4	165	31	26	15	26	1.96
41996453--41996659	40	5.2	40	85	4	251	24	21	28	26	1.99
41996449--41996669	119	1.9	119	83	5	295	25	21	28	25	1.99
42004499--42004705	40	5.2	40	90	4	305	23	22	27	26	2.00
42008703--42008900	50	4.0	50	79	1	209	26	17	26	29	1.98
42013793--42013877	31	2.7	31	94	0	125	24	29	14	31	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349