Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  101  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31913110--31913154
19
2.3
20
92
7
83
60
15
0
24
1.36
31914188--31914226
19
2.0
20
95
5
71
46
12
5
35
1.65
31918221--31918528
154
2.0
154
95
0
553
32
14
21
31
1.93
31919180--31919225
24
2.0
23
82
4
56
34
0
43
21
1.53
31919022--31919284
133
2.0
133
96
0
481
27
5
39
26
1.79
31920605--31921039
53
8.2
53
84
4
518
29
16
15
38
1.90
31920605--31921038
27
16.3
27
76
4
398
29
16
15
38
1.90
31920680--31921031
80
4.4
80
76
10
213
28
17
15
38
1.91
31924326--31924548
40
5.6
40
84
3
227
26
27
20
24
1.99
31924480--31924557
40
1.9
41
82
10
97
26
28
21
23
1.99
31932266--31932488
40
5.6
40
85
3
236
26
27
21
24
1.99
31932420--31932497
40
1.9
41
82
10
97
26
28
21
23
1.99
31949830--31949864
18
1.9
18
88
0
52
60
0
22
17
1.37
31950198--31950235
15
2.5
15
86
0
58
18
0
44
36
1.50
31950171--31950238
15
4.9
14
74
13
52
22
0
36
41
1.54
31950746--31950775
15
2.0
15
93
0
51
43
0
10
46
1.37
31951972--31952008
10
3.7
10
92
0
65
43
0
13
43
1.44
31955027--31955194
40
4.2
40
82
8
148
27
27
20
24
1.99
31955062--31955247
80
2.3
80
83
9
229
27
27
20
23
1.99
31955064--31955247
40
4.6
40
83
7
205
27
27
21
23
1.99
31962976--31963106
40
3.3
39
87
4
190
28
27
20
23
1.99
31962974--31963158
80
2.3
79
83
10
218
28
27
21
23
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31966192--31966269
29
2.6
30
76
8
88
60
1
1
37
1.13
31966192--31966244
9
5.7
9
80
8
61
64
0
0
35
0.94
31966295--31966324
9
3.2
9
90
9
51
66
0
0
33
0.92
31968270--31968316
24
1.9
24
86
4
67
46
0
4
48
1.21
31970987--31971044
25
2.4
24
78
15
66
46
5
0
48
1.24
31971064--31971125
20
3.2
20
75
6
65
46
0
0
53
1.00
31971626--31971696
33
2.2
34
80
10
85
50
16
5
26
1.67
31971714--31971752
14
2.8
14
88
0
51
30
17
10
41
1.83
31971841--31971872
15
2.1
15
94
0
55
15
6
9
68
1.36
31973795--31973894
3
32.3
3
70
16
62
32
6
3
59
1.37
31973800--31973836
19
1.9
19
94
0
65
27
5
5
62
1.39
31974151--31974210
26
2.4
25
86
5
84
30
8
8
53
1.60
31974541--31974605
24
2.7
25
73
20
66
33
7
4
53
1.50
31979781--31979822
20
2.1
20
90
0
66
50
14
4
30
1.63
31980552--31980604
2
26.5
2
100
0
106
0
0
49
50
1.00
31982072--31982121
6
8.2
6
86
4
73
46
16
20
18
1.85
31982101--31982208
45
2.4
45
87
3
155
42
18
18
20
1.89
31982832--31982885
14
3.7
14
78
9
54
11
12
0
75
1.04
31983144--31983204
24
2.5
23
80
15
61
49
4
0
45
1.23
31983152--31983231
35
2.3
35
85
8
103
50
5
0
45
1.23
31984683--31984790
26
4.2
26
86
2
155
34
8
22
35
1.84
31984684--31984786
52
2.0
52
92
3
172
34
8
22
33
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31992006--31992044
20
1.9
20
85
15
53
35
0
15
48
1.45
31991987--31992052
28
2.4
26
74
18
62
33
1
16
48
1.56
31992205--31992255
25
2.1
25
88
3
77
13
17
21
47
1.82
31998737--31998770
17
1.9
18
94
5
61
11
41
35
11
1.78
31998737--31998776
18
2.2
18
86
8
55
12
42
32
12
1.80
32032472--32032997
263
2.0
263
97
0
989
43
16
19
20
1.88
32037073--32037210
53
2.6
53
86
5
174
27
15
26
31
1.96
32038264--32038302
20
2.0
20
89
0
60
15
33
25
25
1.95
32044405--32044461
20
2.8
19
84
7
60
12
12
7
68
1.39
32046219--32046504
127
2.2
128
82
6
330
27
18
18
35
1.94
32048558--32048667
55
2.0
53
96
3
202
26
23
18
31
1.97
32052057--32052100
21
2.1
21
87
4
63
43
0
0
56
0.99
32052626--32052677
18
2.9
18
88
5
70
25
3
0
71
1.03
32052626--32052677
9
5.7
9
75
11
52
25
3
0
71
1.03
32052647--32052684
17
2.2
18
85
4
51
34
2
0
63
1.09
32053537--32053574
20
1.9
20
88
0
58
23
0
7
68
1.16
32053589--32053632
18
2.5
18
82
13
56
40
2
4
52
1.34
32056063--32056130
25
2.9
23
72
18
59
50
5
1
42
1.35
32056158--32056201
20
2.2
19
88
8
61
52
0
0
47
1.00
32056137--32056205
24
3.1
23
75
21
67
50
2
0
46
1.16
32058964--32059028
32
2.0
32
87
0
94
40
3
32
24
1.71
32058959--32059028
16
4.4
16
83
7
79
38
2
31
27
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32059242--32059283
15
2.7
16
82
14
52
52
2
0
45
1.13
32059251--32059292
15
2.9
15
82
10
52
52
0
0
47
1.00
32059360--32059411
15
3.6
15
80
12
56
53
1
0
44
1.11
32059245--32059646
119
3.4
119
98
0
759
50
4
1
42
1.34
32059479--32059530
15
3.6
15
80
12
56
53
1
0
44
1.11
32059599--32059644
15
3.0
16
81
9
60
52
2
0
45
1.13
32059637--32059676
12
3.5
11
90
6
62
27
2
2
67
1.16
32063298--32063322
2
12.5
2
100
0
50
52
0
0
48
1.00
32078964--32079078
58
2.0
58
86
3
160
49
8
3
38
1.51
32080536--32080615
21
3.5
21
73
20
72
73
5
3
17
1.16
32080673--32080712
15
2.7
15
96
3
73
70
0
5
25
1.08
32080686--32080741
23
2.4
23
82
5
69
66
0
3
30
1.09
32080686--32080750
22
2.8
23
79
9
62
66
0
4
29
1.12
32082243--32082281
20
2.0
20
84
0
51
56
10
0
33
1.33
32083782--32083832
17
3.2
17
68
21
56
15
11
17
54
1.70
32085219--32085245
13
2.1
13
100
0
54
44
7
7
40
1.60
32088580--32088762
40
4.6
39
82
9
201
24
22
27
25
2.00
32088632--32088786
79
2.0
79
83
7
199
25
21
27
25
1.99
32089707--32089751
11
4.1
11
100
0
90
46
0
0
53
1.00
32096963--32097107
40
3.6
40
84
4
175
25
23
26
24
2.00
32104848--32104990
40
3.6
40
84
6
175
25
24
25
23
2.00
32110485--32110510
8
3.2
8
100
0
52
30
0
23
46
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32110980--32111038
24
2.4
25
78
13
68
27
18
20
33
1.96
32115522--32115561
20
2.0
20
85
14
55
22
27
40
10
1.86
32121763--32121876
48
2.4
48
82
2
133
35
14
21
28
1.93
32121757--32121859
46
2.2
46
82
3
125
35
14
23
26
1.93
32135229--32135259
15
2.1
15
100
0
62
6
38
0
54
1.26
32135303--32135352
15
3.5
14
79
15
50
42
8
24
26
1.82
32139702--32139857
39
3.9
39
90
2
231
30
17
3
48
1.63
32139717--32139857
40
3.6
39
92
2
237
31
14
2
51
1.57
32139704--32139857
79
1.9
79
93
2
265
29
17
3
49
1.62
32140016--32140048
12
2.8
12
95
0
57
15
39
30
15
1.88
32142370--32142484
18
6.3
18
74
4
97
40
15
8
34
1.78
32142380--32142487
36
3.0
36
80
1
110
39
14
8
37
1.77
32142493--32142564
18
3.9
18
70
10
56
44
13
9
31
1.77
32142510--32142559
18
2.7
19
75
6
57
50
10
8
32
1.65
32147350--32147403
24
2.2
24
83
0
63
20
24
7
48
1.75
32147572--32147741
40
4.3
40
74
10
154
36
20
19
23
1.95
32147524--32147741
116
1.9
116
84
7
300
34
21
19
24
1.96
32147605--32147783
76
2.4
76
83
1
225
37
22
18
21
1.94
32149428--32149491
20
3.2
20
68
12
60
14
18
25
42
1.88
32149438--32149501
19
3.3
19
66
12
58
18
23
21
35
1.95
32149420--32149540
39
3.1
39
90
1
179
20
22
19
38
1.94
32151934--32151996
29
2.2
28
80
8
74
39
0
1
58
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32154137--32154205
29
2.3
29
77
2
75
55
5
5
33
1.48
32165792--32165847
29
1.9
29
85
0
76
41
21
16
21
1.90
32173673--32173749
28
2.8
28
80
4
93
28
29
10
31
1.90
32176086--32176114
14
2.0
15
93
6
51
48
6
3
41
1.47
32182882--32182919
13
2.9
13
92
0
58
26
28
36
7
1.84
32191886--32192095
104
2.0
104
100
0
420
25
16
24
34
1.95
32193260--32193297
6
6.3
6
87
0
58
50
13
15
21
1.78
32193260--32193303
18
2.4
18
88
0
61
47
13
15
22
1.81
32194185--32194221
14
2.6
15
83
12
51
37
5
0
56
1.22
32194187--32194249
21
3.1
21
77
8
60
39
4
0
55
1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356