genome.fa.s11.2.7.7.80.10.50.1000.212.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  212  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69299070--69299380	47	6.6	47	93	0	496	32	8	30	28	1.87
69298964--69299188	116	1.9	116	96	0	414	32	7	29	31	1.84
69299499--69299577	37	2.1	37	88	4	115	25	18	30	25	1.98
69301632--69301775	35	4.1	35	85	0	171	31	22	16	29	1.96
69304027--69304124	49	2.0	50	87	2	144	28	8	9	54	1.61
69304034--69304131	50	2.0	48	82	5	117	28	8	9	54	1.61
69307263--69307306	22	2.0	22	100	0	88	31	4	18	45	1.69
69308628--69308726	49	2.0	51	92	4	166	26	6	11	56	1.57
69309096--69309641	272	2.0	272	96	0	1002	28	13	17	41	1.87
69313357--69313482	46	2.7	46	91	0	189	29	26	22	22	1.99
69321589--69321631	13	3.3	13	75	12	52	65	9	9	16	1.47
69321584--69321631	26	1.9	25	87	8	71	66	8	8	16	1.42
69321687--69322147	3	157.0	3	68	13	160	59	3	8	28	1.41
69321778--69321850	29	2.5	28	79	18	78	65	0	9	24	1.22
69321802--69321931	43	3.1	41	76	17	117	62	0	8	28	1.30
69321854--69321987	62	2.2	62	85	5	173	61	0	8	29	1.27
69323326--69323387	30	2.1	30	100	0	124	43	17	12	25	1.85
69323655--69323818	88	1.9	88	86	0	238	29	18	22	28	1.98
69324001--69324460	44	10.6	44	68	12	222	20	23	20	35	1.96
69323838--69324148	85	3.6	85	84	5	353	21	24	20	33	1.97
69324086--69324462	87	4.3	86	88	3	524	20	23	20	35	1.96
69324130--69324473	43	8.0	43	64	7	160	20	22	21	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69324517--69324646	64	2.0	64	93	0	224	36	13	19	31	1.90
69332410--69332437	9	3.1	9	100	0	56	46	10	21	21	1.81
69333668--69333741	31	2.4	31	84	13	100	66	1	2	29	1.14
69337906--69339033	495	2.3	496	96	0	2069	42	15	6	35	1.73
69339284--69339391	41	2.6	41	97	0	198	25	29	21	24	1.99
69339364--69339455	41	2.3	41	84	1	123	17	21	25	35	1.95
69342598--69343065	3	158.0	3	70	12	202	60	2	7	28	1.39
69342689--69342853	26	5.8	29	69	15	78	66	0	6	26	1.20
69342721--69342786	26	2.5	27	78	7	82	65	1	6	27	1.25
69342684--69342780	17	5.9	17	70	12	51	67	2	6	24	1.25
69342673--69343065	23	17.4	23	67	12	122	61	3	7	27	1.37
69342809--69342838	16	1.9	15	93	6	51	76	0	0	23	0.78
69347286--69347330	23	1.9	24	81	4	56	42	4	2	51	1.34
69347887--69347917	16	1.9	16	93	0	53	32	6	0	61	1.21
69349199--69349250	21	2.5	21	90	6	79	34	30	3	30	1.76
69349551--69349579	13	2.2	13	100	0	58	55	31	0	13	1.39
69353765--69353822	21	2.7	22	84	10	77	34	12	22	31	1.91
69361794--69361843	25	2.0	26	88	4	75	36	22	14	28	1.92
69361880--69361937	21	2.7	22	84	10	77	34	12	22	31	1.91
69361988--69362058	24	3.0	24	81	10	74	29	23	21	25	1.99
69365183--69365232	22	2.3	22	100	0	100	30	12	10	48	1.73
69366228--69366286	30	2.0	28	87	6	82	18	15	22	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69369212--69369298	20	4.3	20	83	4	104	41	19	27	11	1.86
69377040--69377134	50	1.9	50	88	0	145	35	14	22	27	1.93
69379052--69379132	43	1.9	41	87	5	117	38	23	12	25	1.90
69382721--69382779	27	2.2	26	82	11	75	0	44	1	54	1.10
69383145--69383183	7	5.6	7	85	11	53	33	0	0	66	0.92
69383123--69383184	15	4.1	15	74	15	65	35	1	1	61	1.16
69383130--69383184	8	7.2	8	76	15	55	32	1	1	63	1.15
69384320--69384397	40	2.0	40	86	0	111	25	21	21	30	1.98
69387890--69387931	22	1.9	22	85	0	57	40	0	26	33	1.56
69388398--69388490	42	2.2	42	90	3	143	31	16	21	31	1.95
69391846--69391952	48	2.2	49	93	3	189	29	5	21	42	1.75
69398720--69399302	175	3.3	175	93	0	988	28	20	18	32	1.96
69398816--69399264	88	5.1	85	68	15	297	27	19	19	33	1.96
69398679--69399302	87	7.1	86	67	14	330	28	20	18	32	1.96
69399282--69399474	44	4.4	44	71	5	147	31	22	15	30	1.95
69399264--69399430	88	1.9	87	82	6	212	28	22	16	32	1.95
69399249--69399568	132	2.4	132	87	1	442	28	22	16	32	1.95
69400465--69400511	18	2.6	19	87	12	64	0	12	4	82	0.80
69406166--69406299	19	7.2	19	88	8	204	36	16	9	37	1.82
69406166--69406299	36	3.6	36	86	11	182	36	16	9	37	1.82
69406155--69406299	55	2.6	55	92	3	236	37	15	10	35	1.82
69406155--69406310	36	4.2	36	79	14	133	38	15	10	35	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69410437--69410537	27	3.7	26	84	8	130	37	21	23	16	1.93
69433909--69433968	31	2.0	29	90	6	93	23	25	16	35	1.95
69444261--69444330	28	2.5	28	90	4	106	32	27	12	27	1.93
69449319--69449586	94	2.9	91	77	7	265	25	28	20	26	1.99
69449973--69450030	30	1.9	30	89	0	89	31	24	10	34	1.89
69452650--69452762	57	2.0	56	98	1	217	23	26	21	29	1.99
69455960--69456078	55	2.2	54	80	8	134	24	26	25	23	2.00
69456838--69457199	47	7.7	48	73	13	193	22	29	20	27	1.98
69456841--69457191	94	3.7	93	77	8	320	23	29	20	26	1.98
69460230--69460283	21	2.6	21	87	0	72	38	18	18	24	1.93
69461562--69461592	8	3.9	8	100	0	62	90	9	0	0	0.46
69467102--69467294	75	2.6	75	93	0	323	11	45	8	34	1.70
69467306--69467364	20	3.3	20	71	28	69	0	44	0	55	0.99
69467312--69467344	13	2.6	13	90	4	50	0	42	0	57	0.98
69467303--69467446	33	4.4	32	72	11	105	2	45	0	51	1.18
69467303--69467440	66	2.1	66	82	5	163	2	45	0	51	1.18
69468030--69468056	9	3.0	9	100	0	54	22	0	44	33	1.53
69468351--69468389	20	2.1	18	85	9	51	61	0	0	38	0.96
69468371--69468420	26	2.0	26	88	4	75	48	2	0	50	1.12
69468355--69468575	95	2.3	98	81	9	276	45	2	0	51	1.20
69468534--69468581	16	2.9	16	73	14	53	45	0	0	54	0.99
69468531--69468611	34	2.4	34	81	8	85	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69468600--69468636	16	2.3	17	86	13	60	62	0	0	37	0.96
69469441--69469477	15	2.5	15	95	0	65	29	13	0	56	1.37
69470067--69470113	20	2.2	22	92	7	80	46	2	0	51	1.13
69470093--69470119	13	2.1	13	100	0	54	44	0	0	55	0.99
69470173--69470224	22	2.2	24	83	10	63	51	0	1	46	1.12
69470173--69470223	25	2.0	24	82	14	59	52	0	1	45	1.12
69471148--69471192	23	2.0	22	83	12	56	37	0	6	55	1.26
69476673--69476705	14	2.4	14	94	0	57	24	9	15	51	1.72
69477266--69477317	26	2.0	26	85	7	70	44	7	13	34	1.72
69477706--69477780	34	2.2	35	86	13	104	45	0	5	49	1.25
69477811--69477860	26	2.0	26	88	4	75	52	6	0	42	1.26
69478091--69478125	16	2.2	16	89	0	52	42	2	25	28	1.69
69478750--69478839	27	3.2	27	73	17	83	38	11	5	44	1.63
69479433--69479483	25	2.0	25	92	0	84	37	17	5	39	1.74
69484098--69484148	25	2.0	25	92	0	84	37	17	5	39	1.74
69485233--69485329	30	3.2	30	85	2	131	32	29	6	30	1.82
69485637--69485876	133	1.8	129	89	5	374	57	14	11	15	1.64
69485639--69485905	133	2.1	130	85	5	362	56	14	12	16	1.67
69486683--69486730	16	3.0	16	81	6	53	37	4	27	31	1.76
69486982--69487014	17	1.9	17	100	0	66	63	0	0	36	0.95
69487404--69487430	14	1.9	14	100	0	54	74	7	3	14	1.18
69487803--69487862	28	2.1	30	81	12	72	46	1	1	50	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69490302--69490333	3	10.7	3	93	0	55	68	0	28	3	1.04
69495587--69495681	19	5.0	19	89	7	149	38	10	14	35	1.81
69495574--69495651	36	2.2	35	82	15	97	37	12	14	35	1.84
69495603--69495640	17	2.5	15	80	19	51	39	10	15	34	1.82
69495589--69495681	36	2.5	37	89	8	143	38	10	15	35	1.82
69497421--69497468	24	2.0	24	100	0	96	41	8	4	45	1.53
69497815--69497843	13	2.1	14	93	6	51	24	10	6	58	1.55
69503479--69503870	209	1.9	213	90	4	643	27	11	15	45	1.79
69503511--69503941	209	2.1	206	81	9	480	28	12	16	43	1.83
69513284--69513331	11	4.1	11	77	15	51	25	4	2	68	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356