genome.fa.s11.2.7.7.80.10.50.1000.151.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  151  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48604252--48604427	27	6.5	26	81	6	165	26	16	28	28	1.97
48604252--48604407	82	1.9	81	86	3	224	26	16	28	28	1.97
48604248--48604427	82	2.2	81	82	3	218	26	16	27	28	1.97
48617376--48617543	40	4.2	40	82	8	148	27	27	20	24	1.99
48617411--48617596	80	2.3	80	83	9	229	27	27	20	23	1.99
48617413--48617596	40	4.6	40	83	7	205	27	27	21	23	1.99
48625271--48625438	40	4.2	40	82	8	148	27	27	20	24	1.99
48625308--48625438	40	3.3	39	87	4	190	28	27	20	23	1.99
48625306--48625491	80	2.3	80	83	9	229	28	27	20	23	1.99
48625311--48625491	40	4.5	40	82	7	163	27	27	20	23	1.99
48634246--48634285	21	1.9	21	100	0	80	50	15	12	22	1.77
48635946--48636096	27	5.6	27	95	1	176	30	29	13	26	1.94
48635946--48636096	55	2.8	54	93	1	248	30	29	13	26	1.94
48639028--48639099	28	2.6	28	84	0	99	30	31	13	23	1.94
48639085--48639181	40	2.4	40	89	0	140	31	24	18	24	1.97
48644022--48644395	191	2.0	189	85	3	500	28	30	8	32	1.87
48646808--48647032	40	5.7	39	88	3	290	24	28	23	23	2.00
48654491--48654715	40	5.7	39	85	3	254	24	28	24	23	2.00
48654491--48654675	79	2.3	80	88	0	264	25	27	23	22	2.00
48654491--48654715	79	2.8	78	82	7	231	24	28	24	23	2.00
48658312--48658378	21	3.2	21	74	16	59	49	13	0	37	1.42
48658349--48658395	24	2.0	24	84	16	62	51	17	0	31	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48659184--48659230	5	9.8	5	86	9	71	61	0	0	38	0.96
48659184--48659232	23	2.2	22	92	3	80	61	0	0	38	0.96
48660809--48660847	14	2.8	14	92	0	60	41	7	17	33	1.79
48662266--48662324	30	2.0	30	89	0	91	33	25	13	27	1.93
48663852--48663888	16	2.3	16	86	13	58	40	0	0	59	0.97
48666121--48666299	85	2.1	85	98	0	349	37	8	27	26	1.85
48667551--48668008	47	9.6	48	90	4	637	33	8	28	29	1.87
48667551--48668008	96	4.8	96	91	3	694	33	8	28	29	1.87
48670438--48670512	38	2.0	38	86	5	107	30	18	26	24	1.98
48670573--48671006	40	10.9	40	93	0	679	24	21	28	26	1.99
48672259--48672436	85	2.1	85	98	0	347	37	8	27	26	1.85
48673698--48674245	47	11.6	47	92	3	802	33	9	29	27	1.88
48673698--48674245	96	5.8	96	91	3	823	33	9	29	27	1.88
48674051--48674123	22	3.3	22	65	24	62	30	12	31	26	1.92
48679199--48679367	43	4.0	43	81	6	191	24	15	26	33	1.96
48682817--48682856	21	2.0	21	85	5	55	22	20	42	15	1.88
48690323--48690371	21	2.3	21	85	0	62	26	26	32	14	1.94
48692173--48692355	79	2.3	80	84	7	230	25	27	22	24	2.00
48692171--48692355	40	4.7	40	83	7	234	25	28	22	23	2.00
48700219--48700401	79	2.3	80	82	7	221	24	26	23	25	2.00
48700217--48700401	40	4.7	40	80	6	207	24	27	23	24	2.00
48702735--48702911	47	3.8	46	74	12	155	24	29	18	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48702775--48702955	94	1.9	93	83	3	229	24	29	18	27	1.98
48709020--48709059	18	2.2	18	86	0	53	62	2	10	25	1.39
48710697--48710734	17	2.2	17	95	0	67	15	10	15	57	1.64
48711445--48711604	43	3.7	43	73	11	112	22	15	28	33	1.95
48714062--48714421	48	7.5	48	96	0	596	34	7	28	29	1.85
48714594--48714696	37	2.8	37	95	0	179	24	20	31	24	1.98
48715971--48716102	40	3.4	40	93	5	234	27	21	25	25	1.99
48715971--48716121	78	1.9	77	88	9	227	26	22	25	25	2.00
48716133--48716201	28	2.5	28	95	0	120	20	21	26	31	1.98
48719729--48720089	48	7.5	48	93	0	587	36	6	26	30	1.83
48720264--48720363	37	2.7	37	95	0	173	25	19	32	24	1.98
48735951--48735989	20	2.0	20	84	0	51	38	28	15	17	1.91
48738846--48738885	21	1.9	21	89	0	62	32	17	15	35	1.91
48747369--48747460	35	2.6	35	76	10	98	25	6	22	45	1.76
48749656--48749786	50	2.6	50	96	0	244	29	28	14	27	1.95
48759814--48759866	25	2.1	25	96	0	97	32	22	32	13	1.92
48759814--48759880	25	2.7	24	86	9	64	34	19	34	11	1.88
48760579--48760881	27	11.3	27	83	4	182	34	22	5	38	1.77
48760618--48760962	81	4.3	81	87	2	435	31	21	5	40	1.77
48760618--48760968	27	13.0	26	82	5	382	31	21	5	41	1.76
48761189--48761332	67	2.1	67	81	7	162	21	27	20	30	1.98
48761300--48761359	27	2.3	26	85	2	75	21	23	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48761478--48761550	31	2.4	31	83	0	92	20	17	12	49	1.79
48761513--48761575	25	2.5	25	94	0	108	20	20	11	47	1.80
48761478--48761596	6	19.3	6	67	17	66	20	17	12	49	1.79
48761517--48761564	13	3.8	13	73	15	55	20	22	10	45	1.81
48762982--48763035	25	2.2	25	96	0	99	27	24	37	11	1.89
48763791--48764143	27	13.1	27	83	3	406	32	20	5	40	1.77
48764580--48764710	6	21.3	6	68	13	79	18	17	13	50	1.78
48764602--48764686	37	2.3	37	89	0	125	18	18	14	48	1.81
48764643--48764727	12	7.0	12	68	10	57	16	17	14	51	1.76
48764618--48764701	37	2.3	37	85	4	107	17	20	11	50	1.78
48766856--48767209	27	13.1	27	83	5	421	30	22	5	41	1.76
48766811--48767209	54	7.4	54	84	2	426	32	21	5	40	1.76
48767718--48767848	6	21.3	6	70	16	81	18	19	12	49	1.79
48767718--48767790	31	2.4	31	83	0	83	21	17	10	49	1.78
48767718--48767839	37	3.4	36	72	15	119	18	19	12	50	1.78
48769954--48770074	27	4.5	27	76	8	77	35	22	4	37	1.76
48770001--48770083	27	3.1	27	83	0	103	31	24	4	39	1.76
48770592--48770722	6	21.3	6	70	16	81	18	19	12	49	1.79
48770592--48770664	31	2.4	31	83	0	83	21	17	10	49	1.78
48770592--48770713	37	3.4	36	72	15	119	18	19	12	50	1.78
48772829--48772895	27	2.5	27	75	0	71	38	23	5	31	1.79
48772875--48773172	27	11.1	27	85	2	332	29	21	7	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48772875--48773172	107	2.8	106	85	5	393	29	21	7	41	1.79
48772875--48773172	134	2.2	134	85	3	386	29	21	7	41	1.79
48773390--48773528	67	2.0	67	84	6	181	18	25	23	31	1.97
48773674--48773753	31	2.6	31	85	0	106	22	17	11	48	1.78
48773674--48773804	6	21.3	6	69	16	72	21	16	11	50	1.76
48773705--48773777	37	2.0	37	88	0	110	21	20	9	47	1.78
48773674--48773781	31	3.3	31	74	14	99	22	17	11	49	1.78
48773705--48773795	37	2.5	37	85	0	101	20	18	9	50	1.75
48775922--48776301	27	14.2	27	82	2	390	32	22	6	38	1.78
48775949--48776301	80	4.4	81	84	5	446	32	21	5	39	1.77
48776805--48776900	31	3.3	31	74	16	105	19	19	13	46	1.83
48776833--48776898	25	2.6	25	85	0	96	19	22	13	43	1.86
48778762--48778908	73	2.0	73	100	0	294	29	15	17	36	1.91
48779310--48779348	20	2.0	20	85	10	53	28	10	20	41	1.85
48782108--48782231	47	2.6	48	82	12	150	26	29	14	29	1.95
48786204--48786229	12	2.2	12	100	0	52	42	26	7	23	1.81
48788745--48788849	34	2.8	38	74	12	110	27	20	26	25	1.99
48791486--48791513	7	4.0	7	100	0	56	57	0	14	28	1.38
48802170--48802204	18	1.9	18	94	0	61	17	8	0	74	1.06
48805584--48805613	16	1.9	15	93	6	51	73	0	3	23	0.98
48806271--48806333	24	2.7	24	85	2	74	68	7	4	19	1.33
48807725--48807771	18	2.7	18	80	3	60	12	42	27	17	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48809618--48809664	24	2.0	24	83	8	60	29	4	2	63	1.25
48810630--48810690	19	3.1	19	73	13	52	31	1	4	62	1.26
48811334--48811401	20	3.4	20	74	11	59	38	7	10	44	1.67
48811449--48811500	26	2.0	26	88	0	77	44	5	3	46	1.45
48813912--48813951	19	2.1	19	85	4	53	45	0	0	55	0.99
48820240--48820288	10	5.3	10	81	18	70	69	0	0	30	0.89
48820239--48820288	18	2.7	19	90	9	86	68	0	0	32	0.90
48820304--48820372	30	2.3	29	79	18	72	63	7	1	27	1.29
48820326--48820372	10	4.8	10	79	10	53	65	2	2	29	1.15
48820388--48820422	10	3.5	10	92	0	52	57	2	0	40	1.14

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356