genome.fa.s11.2.7.7.80.10.50.1000.283.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  283  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92280189--92280332	40	3.6	40	82	9	177	24	22	27	25	2.00
92288284--92288508	62	3.6	62	76	0	216	24	26	22	26	2.00
92292656--92292753	35	2.7	37	87	12	150	37	10	16	35	1.82
92292656--92292746	19	4.9	19	92	8	161	37	10	15	36	1.83
92292656--92292769	19	5.8	22	87	10	96	36	9	15	37	1.81
92293038--92293071	18	1.9	17	88	5	50	29	0	0	70	0.87
92295632--92296117	49	10.1	49	88	3	720	31	9	30	29	1.88
92295632--92296117	96	5.0	96	93	1	758	31	9	30	29	1.88
92295632--92296115	145	3.4	144	89	3	724	31	9	30	29	1.88
92298143--92298288	43	3.4	43	96	0	274	23	15	34	26	1.94
92298270--92298343	29	2.6	29	89	4	105	25	16	32	25	1.96
92298654--92298914	40	6.5	40	83	3	296	24	22	27	24	2.00
92302445--92302828	47	8.1	47	88	4	538	31	9	30	28	1.88
92302445--92302828	96	4.0	96	93	2	587	31	9	30	28	1.88
92316041--92316445	45	8.9	45	73	8	338	32	16	25	25	1.96
92316041--92316348	137	2.2	137	95	0	544	31	17	25	25	1.97
92316268--92316437	89	1.9	89	92	0	286	32	14	27	26	1.94
92316113--92316457	89	3.8	89	75	7	239	33	16	25	24	1.96
92316802--92316893	18	4.9	19	94	2	161	35	10	17	35	1.85
92316802--92316916	18	5.8	22	86	10	96	35	9	17	37	1.82
92317185--92317218	18	1.9	17	88	5	50	29	0	0	70	0.87
92327406--92327585	55	3.3	54	90	3	261	26	13	28	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92327406--92327585	83	2.2	82	90	1	279	26	13	28	30	1.94
92327406--92327585	28	6.5	28	92	2	267	26	13	28	30	1.94
92342125--92342173	26	2.0	24	84	8	62	63	8	2	26	1.34
92342403--92342477	11	6.9	11	77	8	64	61	30	4	4	1.33
92342401--92342486	22	4.0	22	80	6	86	61	29	4	4	1.36
92355800--92355849	20	2.5	20	96	0	91	46	14	4	36	1.63
92358051--92358306	48	5.4	48	74	12	213	26	20	25	27	1.99
92363850--92363901	20	2.7	18	80	11	59	44	0	5	50	1.26
92363845--92363905	9	6.4	9	80	10	68	37	0	4	57	1.20
92363844--92363906	29	2.2	30	77	13	69	36	0	4	58	1.19
92365748--92365826	28	2.8	28	79	12	83	63	5	11	20	1.46
92370701--92370745	6	7.5	6	90	9	74	82	0	15	2	0.77
92372540--92372579	16	2.4	16	91	8	62	47	20	0	32	1.50
92375565--92375718	84	1.8	84	85	2	220	27	19	20	33	1.96
92382793--92382882	28	3.2	28	83	0	126	56	7	17	17	1.64
92386751--92386981	68	3.5	64	78	12	193	23	29	16	29	1.97
92387647--92387707	30	2.0	30	87	0	86	29	22	8	39	1.83
92392171--92392211	21	1.9	22	90	5	66	26	0	7	65	1.18
92394173--92394230	28	2.0	28	87	9	82	20	41	18	18	1.91
92395533--92395675	51	2.8	51	88	0	205	30	30	16	22	1.96
92400113--92400190	40	1.9	40	84	7	104	61	14	15	8	1.56
92400949--92401009	29	2.1	29	93	0	104	34	29	21	14	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92405053--92405096	18	2.4	18	80	0	52	70	4	4	20	1.23
92408043--92408082	20	2.0	20	85	0	53	35	15	0	50	1.44
92412543--92412573	12	2.6	12	100	0	62	0	12	0	87	0.55
92412540--92412576	15	2.5	15	91	8	58	0	10	0	89	0.49
92412831--92412880	18	2.8	18	75	0	55	58	2	8	32	1.39
92413010--92413054	18	2.6	18	82	10	58	57	2	8	31	1.41
92413467--92413509	3	15.0	3	90	4	63	69	2	0	27	1.00
92415160--92415305	44	3.3	44	66	9	125	20	24	21	33	1.97
92415328--92415660	44	7.6	43	68	9	167	20	24	21	34	1.96
92415019--92415705	87	7.8	87	89	2	828	21	23	20	34	1.97
92415293--92415703	43	9.5	43	66	7	179	21	22	21	34	1.97
92420019--92420282	18	14.3	19	72	11	108	37	14	11	35	1.83
92420092--92420270	54	3.3	52	79	5	171	37	13	12	35	1.83
92420098--92420282	36	5.2	36	76	2	167	38	12	11	36	1.81
92420648--92420698	21	2.3	21	81	15	59	41	5	1	50	1.37
92427673--92427717	22	2.0	22	83	8	56	13	22	6	57	1.59
92431480--92431517	18	2.2	17	86	13	51	55	5	2	36	1.37
92431515--92431729	3	72.0	3	64	13	50	56	2	10	30	1.47
92436594--92436687	7	13.4	7	70	4	64	27	0	44	27	1.55
92436588--92436668	21	3.9	21	84	7	85	30	0	41	27	1.56
92436657--92436709	14	3.7	14	75	5	52	20	0	43	35	1.52
92439996--92440065	3	24.0	3	82	5	81	71	0	28	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92439990--92440072	20	4.2	21	82	8	95	73	0	26	0	0.83
92439996--92440063	32	2.1	32	88	0	100	72	0	27	0	0.85
92441351--92441404	3	18.0	3	96	0	99	0	31	0	68	0.90
92441481--92441520	21	1.9	21	100	0	80	25	30	17	27	1.97
92441556--92441623	30	2.2	31	87	7	95	20	8	20	50	1.75
92442749--92442795	23	2.1	22	88	4	67	48	8	12	29	1.71
92442792--92442894	19	5.3	19	66	28	65	38	0	6	54	1.27
92442791--92442905	39	2.9	39	94	0	203	39	0	6	54	1.25
92442829--92442878	24	2.1	24	85	7	66	40	0	4	56	1.18
92443006--92443171	27	6.2	27	86	6	205	45	23	1	29	1.63
92443006--92443171	9	18.7	9	85	3	185	45	23	1	29	1.63
92448229--92448257	14	2.1	14	93	6	51	34	0	10	55	1.34
92448676--92448728	21	2.5	21	87	0	70	33	18	47	0	1.49
92449118--92449173	29	1.9	29	92	0	94	26	33	10	28	1.90
92452401--92452571	46	3.7	47	83	8	185	27	18	29	25	1.98
92455085--92455126	16	2.5	17	92	3	68	40	0	0	59	0.97
92455357--92455417	3	20.3	3	80	12	63	63	0	36	0	0.94
92456471--92456498	11	2.5	11	100	0	56	35	0	7	57	1.26
92462355--92462390	16	2.2	16	90	0	54	66	0	0	33	0.92
92463858--92463904	25	1.9	25	83	12	62	53	2	4	40	1.32
92466417--92466518	49	2.1	49	94	0	177	28	16	28	26	1.97
92470230--92470308	30	2.8	30	86	7	103	45	2	3	48	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92470252--92470318	29	2.3	30	84	2	91	47	2	2	46	1.33
92470768--92470829	31	2.0	31	84	9	81	46	0	0	53	1.00
92470803--92470856	22	2.3	23	81	12	67	50	1	0	48	1.11
92471560--92471591	11	2.6	13	85	14	50	53	0	6	40	1.26
92482595--92482619	8	3.1	8	100	0	50	24	0	0	76	0.80
92485322--92485434	27	4.2	26	85	5	136	21	25	18	34	1.96
92485325--92485429	55	1.9	54	90	5	167	21	26	19	32	1.97
92488161--92488253	46	2.0	46	85	4	125	31	18	24	25	1.98
92489753--92489793	5	8.4	5	94	5	75	41	0	0	58	0.98
92489753--92489814	12	5.3	12	75	21	53	41	0	1	56	1.09
92489761--92489822	20	3.2	20	84	15	69	38	0	3	58	1.15
92491409--92491433	12	2.1	12	100	0	50	16	24	20	40	1.91
92491411--92491504	45	2.1	45	92	4	154	22	19	19	39	1.93
92491396--92491515	45	2.4	49	76	18	124	22	18	19	40	1.92
92491411--92491517	45	2.4	45	88	3	135	23	17	18	40	1.91
92499113--92499176	13	4.9	13	74	0	65	31	6	28	34	1.82
92499113--92499176	26	2.5	26	76	0	83	31	6	28	34	1.82
92500617--92500695	37	2.1	37	86	4	106	26	30	17	25	1.97
92500815--92501291	47	10.1	47	93	0	756	27	30	9	33	1.87
92506739--92506809	20	3.5	20	84	0	97	46	0	28	25	1.53
92506739--92506823	20	4.2	20	84	0	89	43	0	27	29	1.55
92510880--92510977	49	2.0	49	95	0	178	25	15	22	36	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92515788--92515891	50	2.1	50	100	0	208	25	7	25	41	1.82
92517437--92517498	29	2.1	29	87	3	88	59	11	12	16	1.61
92517432--92517506	29	2.6	28	81	6	87	54	9	16	20	1.68
92517437--92517517	28	2.8	29	83	7	94	60	9	11	18	1.57
92517437--92517515	29	2.7	29	82	5	79	60	10	11	17	1.57
92521169--92521199	16	1.9	16	93	0	53	38	0	0	61	0.96
92522793--92522832	21	2.0	20	90	5	62	22	0	20	57	1.41
92524766--92524805	21	2.0	20	90	5	62	35	0	22	42	1.54
92524771--92524813	21	2.1	21	83	12	54	32	2	20	44	1.65
92526355--92526398	20	2.2	20	84	12	54	45	13	9	31	1.75

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356