genome.fa.s11.2.7.7.80.10.50.1000.344.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  344  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110127613--110128038	206	2.1	207	92	1	705	32	19	21	26	1.97
110129738--110129785	16	3.1	15	85	8	69	33	4	2	60	1.27
110139871--110139904	13	2.6	13	86	13	52	61	0	0	38	0.96
110139871--110139921	26	2.0	25	85	14	68	56	3	0	39	1.18
110140076--110140168	44	2.1	45	85	2	125	30	9	5	54	1.55
110144898--110144929	16	2.0	16	100	0	64	31	0	0	68	0.90
110145127--110145178	23	2.2	24	80	10	63	59	3	0	36	1.16
110165722--110165758	19	1.9	19	94	0	65	27	13	8	51	1.69
110167293--110167326	13	2.6	13	86	13	52	61	0	0	38	0.96
110167293--110167343	26	2.0	25	85	14	68	56	3	0	39	1.18
110167495--110167587	44	2.1	45	85	2	125	30	9	5	54	1.55
110172317--110172348	16	2.0	16	100	0	64	31	0	0	68	0.90
110172555--110172606	23	2.2	24	80	10	63	59	3	0	36	1.16
110172619--110172648	9	3.4	9	95	4	53	60	0	0	40	0.97
110179059--110179128	30	2.3	31	82	7	81	34	4	11	50	1.58
110185508--110185546	19	2.1	19	100	0	78	51	0	20	28	1.48
110186323--110186446	62	2.0	62	96	0	230	22	29	8	40	1.82
110190701--110190748	20	2.4	21	82	10	64	68	6	0	25	1.12
110194839--110194942	48	2.2	48	86	3	140	18	1	29	50	1.58
110194832--110194969	46	2.9	48	81	6	147	20	2	29	47	1.62
110194969--110195180	41	5.3	41	84	5	272	20	24	21	33	1.97
110194969--110195200	81	2.9	81	87	5	294	20	24	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110198913--110198953	16	2.6	16	92	0	64	48	0	0	51	1.00
110199034--110199071	19	2.0	19	89	0	58	44	13	10	31	1.77
110200275--110200361	40	2.2	39	87	8	122	62	0	0	37	0.96
110202371--110202495	62	2.0	62	100	0	250	28	22	14	34	1.93
110205477--110205558	39	2.1	39	90	0	128	28	13	24	34	1.93
110216784--110216851	30	2.3	30	94	0	118	26	5	10	57	1.55
110217950--110217982	12	2.8	12	95	0	57	54	15	15	15	1.71
110220599--110220629	14	2.1	15	94	5	55	48	0	25	25	1.52
110223872--110223931	31	1.9	31	100	0	120	33	31	3	31	1.74
110228216--110228295	25	3.2	25	89	0	115	36	7	15	41	1.75
110232809--110232888	25	3.2	25	87	0	115	38	7	12	41	1.71
110233097--110233609	153	3.4	152	85	3	692	27	20	15	36	1.92
110235370--110235493	41	3.0	41	81	5	137	34	21	22	20	1.97
110235720--110235776	21	2.6	22	78	10	64	26	3	22	47	1.67
110235720--110235783	7	9.0	7	74	3	56	26	3	23	46	1.67
110235736--110235786	15	3.5	15	81	2	59	25	1	25	47	1.63
110235720--110235782	14	4.4	14	76	4	63	25	3	23	47	1.66
110236399--110236669	103	2.6	102	93	2	463	57	7	11	23	1.59
110236592--110236628	18	2.1	19	85	10	51	75	0	5	18	0.99
110236665--110236702	20	1.9	20	88	0	58	44	10	13	31	1.77
110242447--110242535	43	2.1	43	85	4	117	28	20	25	25	1.99
110242934--110242976	21	2.0	21	86	0	59	20	9	13	55	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110248595--110248631	18	2.1	18	90	10	58	27	0	2	70	1.01
110249972--110250014	21	2.0	21	100	0	86	41	9	13	34	1.77
110256032--110256731	133	5.3	133	91	0	1098	27	18	26	28	1.98
110256177--110256644	45	10.5	44	62	12	116	27	18	27	27	1.98
110256629--110256802	87	2.0	88	97	1	332	27	18	25	28	1.98
110263993--110264044	21	2.5	21	80	0	59	61	5	3	28	1.37
110264568--110264615	25	2.0	26	84	12	66	52	6	8	33	1.57
110268750--110268824	18	4.2	18	89	0	105	28	21	16	34	1.94
110282282--110282322	21	2.0	20	85	4	55	43	17	0	39	1.49
110285238--110285315	40	2.0	40	100	0	156	37	19	20	23	1.95
110297105--110297187	40	2.1	40	90	4	132	24	22	19	33	1.97
110300045--110300127	40	2.1	40	91	8	134	24	22	19	33	1.97
110309522--110309576	20	2.7	21	83	11	60	40	5	0	54	1.23
110309561--110309602	13	3.2	13	83	12	50	38	0	0	61	0.96
110313877--110313920	22	2.0	22	82	13	54	50	13	9	27	1.72
110313820--110314023	100	2.1	99	84	4	268	48	11	7	33	1.67
110314634--110314716	40	2.1	40	91	8	134	33	19	22	24	1.97
110328005--110328252	50	4.8	50	85	5	266	21	28	24	25	1.99
110328004--110328252	100	2.4	104	85	7	321	21	28	24	25	1.99
110328347--110328378	13	2.5	13	94	0	55	56	12	0	31	1.37
110328590--110328647	30	1.9	30	89	0	89	31	24	3	41	1.71
110331851--110331901	5	10.4	5	78	18	54	17	1	1	78	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110331851--110331908	10	5.2	11	78	14	57	18	1	1	77	0.94
110331852--110331911	18	3.5	18	80	8	63	20	1	1	76	0.96
110333419--110333448	15	2.0	15	93	0	51	50	0	10	40	1.36
110338143--110338190	25	1.9	25	87	8	71	33	18	16	31	1.94
110342411--110342447	12	3.0	13	84	11	51	29	40	18	10	1.85
110342754--110342801	25	1.9	25	87	8	71	33	18	16	31	1.94
110349291--110349341	15	3.5	15	81	13	70	60	0	9	29	1.28
110350780--110350910	44	3.0	44	73	6	131	25	28	16	29	1.96
110351296--110351470	89	2.0	89	93	2	298	24	20	22	33	1.97
110351524--110352378	138	6.2	138	93	0	1449	28	21	16	32	1.96
110351524--110352378	277	3.1	277	94	0	1496	28	21	16	32	1.96
110351527--110352378	415	2.1	415	93	0	1465	28	21	16	32	1.95
110352572--110353096	133	3.9	133	93	0	811	29	25	18	26	1.98
110352745--110352946	45	4.5	44	69	9	142	27	27	18	27	1.98
110358010--110358067	26	2.2	26	93	0	98	34	5	24	36	1.78
110367846--110367921	24	3.0	24	76	5	71	63	0	10	26	1.27
110372726--110372755	14	2.1	14	100	0	60	53	20	6	20	1.67
110375231--110375261	9	3.3	9	91	8	53	19	3	0	77	0.90
110379687--110379717	9	3.3	9	91	8	53	19	3	0	77	0.90
110381963--110381987	13	1.9	13	100	0	50	32	20	8	40	1.81
110383244--110383278	16	2.1	17	94	5	63	25	11	0	62	1.28
110388494--110388645	4	38.0	4	100	0	304	25	0	25	50	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110389735--110389808	36	2.1	36	97	0	139	20	8	35	36	1.82
110390121--110390163	20	2.2	20	100	0	86	41	9	20	27	1.83
110390841--110390902	19	3.2	19	69	13	63	38	9	14	37	1.79
110390835--110390912	39	2.0	39	97	0	147	37	10	16	35	1.83
110390989--110391057	29	2.3	28	78	14	68	44	10	17	27	1.80
110396379--110396897	153	3.4	152	91	3	792	24	21	17	37	1.94
110398263--110398471	105	2.0	105	92	1	348	34	9	10	45	1.70
110399560--110399650	40	2.3	40	84	0	101	23	27	32	16	1.96
110401816--110401845	15	1.9	16	93	6	53	16	40	0	43	1.48
110404106--110404182	38	2.0	38	87	0	109	41	1	11	45	1.49
110408055--110408186	58	2.3	55	82	10	151	42	2	3	51	1.32
110417165--110417206	20	2.1	20	95	0	75	30	23	7	38	1.82
110419956--110420023	21	3.2	20	66	25	50	41	20	13	25	1.88
110419935--110420033	43	2.3	43	87	6	148	40	17	14	28	1.88
110419954--110420021	22	3.1	21	66	26	52	42	20	11	25	1.86
110422591--110422632	3	14.0	3	80	9	50	0	38	0	61	0.96
110422631--110422656	3	8.7	3	100	0	52	30	34	0	34	1.58
110431501--110431616	60	1.9	60	98	0	223	20	37	17	24	1.93
110433011--110433277	133	2.0	133	97	0	507	32	12	16	38	1.86
110433220--110433366	74	2.0	73	89	1	222	33	10	25	30	1.89
110434949--110435149	52	4.0	51	78	10	198	29	29	17	22	1.97
110434946--110435149	105	2.0	101	81	8	236	29	30	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110437496--110437696	99	2.0	100	89	2	307	42	15	15	26	1.86
110439664--110439695	16	2.0	16	93	0	55	43	21	0	34	1.53
110440658--110440693	16	2.2	16	90	9	56	33	5	0	61	1.19
110447738--110448235	46	10.8	46	92	2	750	21	23	14	40	1.90
110449858--110449900	2	23.0	2	81	13	56	51	0	2	46	1.13
110450424--110450576	40	3.9	40	96	0	265	30	18	3	47	1.65
110450424--110450576	79	1.9	79	93	2	263	30	18	3	47	1.65
110453696--110453733	14	2.7	14	83	0	58	68	13	2	15	1.32
110454766--110454793	7	4.0	7	100	0	56	57	0	0	42	0.99
110456752--110456791	6	6.7	6	100	0	80	35	15	0	50	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356