genome.fa.s11.2.7.7.80.10.50.1000.282.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  282  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91880653--91880872	52	4.3	52	85	8	299	27	22	14	35	1.93
91880610--91880878	98	2.7	98	93	0	457	28	22	14	34	1.93
91884786--91884858	33	2.2	33	90	0	110	46	9	21	21	1.80
91886323--91886384	29	2.2	28	86	11	83	62	4	4	27	1.36
91886320--91886378	26	2.3	26	82	5	75	62	5	5	27	1.37
91887824--91887874	21	2.4	21	81	12	59	19	29	1	49	1.60
91901003--91901038	2	18.0	2	100	0	72	0	50	0	50	1.00
91908995--91909027	17	1.9	18	88	11	52	45	0	12	42	1.41
91910135--91910191	30	1.9	30	85	0	78	42	12	22	22	1.87
91910451--91910512	21	3.0	20	79	9	72	43	17	24	14	1.86
91911966--91912012	20	2.3	20	100	0	94	8	31	40	19	1.81
91917478--91917732	41	6.2	41	83	1	323	34	24	20	20	1.96
91917898--91917949	14	3.7	14	81	0	59	26	0	25	48	1.52
91917982--91918010	14	2.0	15	93	6	51	20	0	37	41	1.53
91918029--91918054	7	3.7	7	100	0	52	0	0	57	42	0.98
91918026--91918061	14	2.6	14	81	0	54	11	0	50	38	1.38
91922559--91922733	40	4.4	40	91	2	264	25	28	22	23	2.00
91928574--91928836	40	6.7	40	87	7	310	25	21	27	25	1.99
91928575--91928836	79	3.3	78	83	8	302	25	21	27	25	1.99
91928575--91928869	79	3.7	77	81	10	271	26	21	27	24	1.99
91941688--91941787	43	2.3	43	87	5	148	21	14	33	32	1.92
91944440--91944534	46	2.0	47	85	2	129	30	31	15	22	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91944481--91944630	53	2.9	51	77	8	133	32	26	15	26	1.95
91955269--91955360	46	2.0	46	100	0	184	39	17	10	32	1.84
91957857--91958054	105	1.9	102	83	7	256	27	26	13	32	1.94
91966261--91966306	21	2.3	20	78	14	51	45	17	6	30	1.73
91967130--91967173	22	2.0	22	86	0	61	54	2	2	40	1.25
91970840--91970897	29	2.0	29	83	6	73	48	13	6	31	1.69
91978292--91978335	22	2.0	22	90	0	70	54	4	0	40	1.21
91978894--91979030	39	3.7	39	76	19	141	34	29	18	16	1.94
91978951--91979011	30	2.0	30	93	0	104	34	29	21	14	1.93
91979358--91979404	17	2.7	18	78	18	55	44	14	0	40	1.46
91985757--91985785	9	3.0	10	90	10	51	89	0	10	0	0.48
91985759--91985784	9	2.9	9	100	0	52	92	0	7	0	0.39
91994619--91994789	92	1.9	91	85	1	234	25	23	19	30	1.98
91996719--91996800	29	2.8	29	84	0	119	41	6	20	31	1.77
92000266--92000365	50	2.0	50	92	0	164	45	6	8	41	1.58
92000316--92000440	59	2.1	59	89	2	189	50	8	5	36	1.55
92000225--92000424	109	1.8	108	89	3	312	48	7	7	37	1.57
92000811--92000846	18	2.0	18	88	0	54	41	5	22	30	1.76
92002379--92002443	32	2.1	31	82	8	78	67	0	1	30	1.00
92013936--92013960	12	2.1	12	100	0	50	52	16	0	32	1.44
92017143--92017177	15	2.3	16	90	9	56	77	8	11	2	1.10
92017303--92017408	29	3.8	29	73	15	98	50	0	0	49	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92017681--92017740	10	5.9	10	78	7	59	68	3	3	25	1.20
92018814--92018854	21	1.9	22	85	5	57	43	0	2	53	1.13
92018834--92018874	20	2.2	20	91	8	68	46	0	0	53	1.00
92018842--92018915	27	2.8	25	82	13	96	51	0	2	45	1.15
92018826--92018923	21	4.4	22	70	24	62	50	0	2	47	1.12
92019566--92019609	20	2.2	20	80	4	54	45	4	13	36	1.64
92025363--92025441	38	2.1	37	95	2	140	11	18	31	37	1.87
92030748--92030786	16	2.4	16	86	4	51	51	10	7	30	1.64
92030757--92030789	16	2.1	16	100	0	66	48	6	6	39	1.53
92037100--92037163	32	2.0	32	87	0	92	15	25	25	34	1.95
92037111--92037164	16	3.4	16	77	10	65	12	27	27	31	1.93
92037132--92037244	38	3.0	38	83	6	140	16	21	24	37	1.94
92038028--92038114	42	2.1	42	84	0	111	22	21	27	27	1.99
92057808--92057884	29	2.7	29	82	6	86	28	29	20	20	1.98
92061625--92061701	40	1.9	40	100	0	154	32	20	16	29	1.95
92071371--92071418	25	1.9	25	86	0	69	35	22	14	27	1.93
92071465--92071502	11	3.6	11	79	13	53	36	13	18	31	1.89
92071550--92071619	24	2.8	25	80	6	79	27	22	21	28	1.99
92071559--92071632	24	3.0	24	77	11	62	28	22	20	28	1.99
92071838--92071907	30	2.3	30	85	2	95	34	15	25	24	1.95
92075107--92075352	40	6.2	40	85	4	295	22	22	28	26	1.99
92080390--92080701	40	7.8	40	93	0	516	22	27	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92088625--92088936	40	7.8	40	93	0	516	22	27	20	29	1.98
92091388--92091533	79	1.8	79	88	0	220	23	20	30	25	1.99
92091365--92091533	39	4.3	39	83	2	194	23	21	30	24	1.99
92091387--92091568	79	2.3	79	81	0	213	25	20	29	24	1.99
92098588--92098809	40	5.6	39	80	4	194	24	21	30	24	1.99
92098664--92098809	79	1.8	79	88	0	220	23	19	30	25	1.98
92098641--92098809	39	4.3	40	84	4	200	23	20	31	24	1.98
92098663--92098844	79	2.3	79	81	0	213	25	20	30	24	1.99
92102637--92102820	40	4.6	40	89	2	273	25	26	23	24	2.00
92102604--92102818	119	1.8	119	86	4	317	24	27	22	25	2.00
92120173--92120234	24	2.5	25	76	10	65	54	4	4	35	1.43
92120622--92120668	23	2.0	23	91	0	76	63	8	2	25	1.34
92120692--92120733	20	2.2	20	87	12	61	61	2	4	30	1.29
92122575--92122815	44	5.5	43	68	11	148	23	22	19	34	1.96
92122573--92122815	89	2.8	88	89	1	362	23	22	18	35	1.96
92132151--92132198	25	2.0	24	83	4	60	47	10	6	35	1.63
92146609--92146747	23	6.0	23	89	4	208	29	23	20	26	1.99
92146768--92146795	13	2.2	13	100	0	56	57	42	0	0	0.99
92146812--92146850	20	2.0	20	100	0	78	30	20	12	35	1.90
92146813--92146857	20	2.2	20	92	0	72	31	22	13	33	1.92
92167001--92167157	46	3.4	46	77	15	169	29	27	21	21	1.99
92175112--92175286	27	6.4	27	81	5	165	29	29	16	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92178794--92178859	22	3.0	22	72	14	64	45	22	22	9	1.80
92179312--92179355	22	2.0	22	82	8	54	20	18	6	54	1.66
92179397--92179459	30	2.1	30	93	0	108	26	3	11	58	1.47
92183899--92183945	19	2.4	19	82	10	51	40	8	14	36	1.77
92192166--92192204	10	3.8	10	86	6	60	33	17	17	30	1.94
92192166--92192205	21	1.9	21	94	0	71	32	17	17	32	1.93
92192168--92192213	21	2.2	21	88	0	65	36	19	15	28	1.92
92192244--92192294	25	2.0	25	88	0	75	27	19	23	29	1.98
92196866--92196931	27	2.4	27	92	0	114	42	18	18	21	1.89
92198802--92198974	56	3.1	56	92	5	307	46	8	23	21	1.79
92200104--92200288	40	4.6	39	83	5	196	24	22	27	24	2.00
92200104--92200288	79	2.3	81	84	7	227	24	22	27	24	2.00
92200157--92200321	79	2.1	79	84	6	210	26	21	27	24	1.99
92206089--92206261	56	3.1	56	92	5	307	46	8	23	21	1.79
92207391--92207575	40	4.6	39	83	5	196	24	22	27	24	2.00
92207391--92207575	79	2.3	81	84	7	227	24	22	27	24	2.00
92207444--92207608	79	2.1	79	84	6	210	26	21	27	24	1.99
92217809--92217981	46	3.7	46	77	10	199	22	20	27	29	1.99
92217806--92217976	93	1.8	93	93	0	297	22	21	28	28	1.99
92235640--92236167	291	1.8	291	94	0	932	22	26	23	27	1.99
92245185--92245219	3	11.7	3	100	0	70	65	0	0	34	0.93
92254043--92254208	86	1.9	87	79	7	185	37	16	12	33	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
92254644--92254690	20	2.4	19	82	10	58	36	0	0	63	0.94
92257801--92258014	62	3.5	62	81	3	261	22	26	25	25	2.00
92261269--92261386	46	2.6	45	84	9	141	27	16	29	26	1.97
92268860--92269030	46	3.7	46	77	8	159	28	19	28	23	1.98
92268860--92269030	93	1.8	94	81	10	217	28	19	28	23	1.98
92268862--92269075	47	4.6	46	75	8	164	28	18	28	24	1.98
92270150--92270212	22	2.9	22	88	2	83	9	34	28	26	1.88
92272526--92272671	40	3.6	41	82	9	176	23	22	26	26	2.00
92272526--92272704	80	2.2	80	80	6	186	25	21	26	26	2.00
92280189--92280365	80	2.2	80	81	6	191	25	21	27	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356