genome.fa.s11.2.7.7.80.10.50.1000.289.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  289  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94059396--94059575	55	3.3	54	91	3	270	26	14	28	30	1.95
94059396--94059575	83	2.2	82	91	1	288	26	14	28	30	1.95
94067390--94067541	27	5.6	27	92	3	232	26	14	28	29	1.95
94067390--94067541	55	2.8	55	92	0	241	26	14	28	29	1.95
94076676--94076973	40	7.5	40	86	6	374	25	26	23	24	2.00
94076711--94076973	120	2.2	120	91	2	413	26	26	23	23	2.00
94081732--94081783	24	2.2	24	100	0	104	23	23	11	42	1.86
94086709--94086751	22	1.9	23	85	4	61	18	9	25	46	1.79
94087148--94087182	18	2.0	18	94	5	63	17	28	40	14	1.88
94088063--94088118	28	2.0	29	82	10	71	42	5	10	41	1.62
94108338--94108390	26	2.0	26	100	0	106	24	30	18	26	1.98
94109360--94109384	9	2.8	9	100	0	50	12	0	8	80	0.92
94113890--94113974	43	2.0	43	92	0	143	56	11	9	22	1.63
94114043--94114077	18	1.9	18	100	0	70	57	17	0	25	1.40
94114041--94114079	18	2.2	18	90	0	69	56	20	0	23	1.42
94120698--94120761	33	2.0	31	82	14	76	62	3	0	34	1.11
94121221--94121259	19	2.1	18	86	13	53	30	0	2	66	1.05
94123562--94123631	18	3.9	18	81	9	72	64	0	1	34	1.03
94126481--94126511	3	10.3	3	100	0	62	67	0	0	32	0.91
94128224--94128261	12	3.2	12	85	7	51	50	2	0	47	1.15
94128236--94128283	12	3.8	12	81	10	51	50	10	0	39	1.37
94130298--94130376	29	2.7	29	86	5	106	27	32	15	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94143801--94143863	27	2.3	27	88	0	90	22	0	41	36	1.54
94153002--94153080	42	1.9	41	86	2	113	31	30	15	22	1.95
94154244--94154268	13	1.9	13	100	0	50	40	24	4	32	1.73
94160307--94160340	17	2.0	17	100	0	68	35	11	11	41	1.78
94164989--94165224	118	2.0	118	100	0	472	32	23	18	25	1.97
94167946--94168149	107	1.9	106	90	1	327	28	22	23	25	1.99
94168938--94168979	20	2.1	20	95	0	75	26	23	7	42	1.80
94171859--94172015	43	3.7	43	72	7	122	23	17	26	32	1.96
94175097--94175144	24	2.0	24	95	0	87	35	8	22	33	1.84
94179597--94179727	44	3.0	44	82	8	160	25	15	23	35	1.94
94179605--94179760	43	3.6	42	79	6	118	25	17	24	32	1.97
94186028--94186487	49	9.6	49	91	2	688	33	8	29	28	1.86
94186028--94186487	145	3.2	145	92	1	721	33	8	29	28	1.86
94194244--94194288	8	5.5	8	81	5	54	75	0	4	20	0.97
94194226--94194318	17	5.2	17	75	11	71	69	1	4	24	1.13
94194227--94194301	25	3.0	25	78	5	80	70	1	4	24	1.12
94195753--94195806	26	2.1	26	96	0	99	29	24	18	27	1.98
94196744--94196775	16	2.0	16	100	0	64	37	18	18	25	1.94
94210266--94210489	48	4.7	48	77	8	231	24	31	18	25	1.98
94210266--94210497	96	2.4	96	84	5	299	24	32	18	25	1.97
94210266--94210586	96	3.3	95	81	6	285	25	30	17	26	1.98
94210266--94210594	144	2.3	144	80	4	360	25	30	17	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94210266--94210590	48	6.8	47	72	10	196	25	30	17	26	1.97
94212861--94212902	20	2.0	21	95	4	77	23	4	4	66	1.30
94213995--94214103	55	2.0	55	100	0	218	31	14	14	39	1.87
94221227--94221270	21	2.1	21	83	8	54	68	2	6	22	1.25
94222639--94222685	25	2.0	24	87	8	69	61	0	6	31	1.21
94222838--94222875	20	1.9	20	89	10	60	23	0	7	68	1.16
94223715--94223767	24	2.2	24	89	0	79	33	1	9	54	1.43
94226942--94226981	18	2.2	18	95	0	71	65	0	7	27	1.20
94227308--94227338	14	2.2	14	100	0	62	35	6	9	48	1.62
94234014--94234086	11	6.6	11	76	16	55	57	1	1	39	1.16
94234194--94234256	21	3.0	20	71	15	56	25	1	3	69	1.12
94237304--94237347	21	2.0	21	83	16	54	47	4	9	38	1.56
94237569--94237617	20	2.5	20	86	0	62	32	16	14	36	1.89
94240791--94241757	47	20.3	47	93	2	1619	29	29	8	31	1.87
94240791--94241757	96	10.1	96	94	2	1648	29	29	8	31	1.87
94240791--94241757	143	6.8	141	94	2	1619	29	29	8	31	1.87
94245404--94245455	25	2.1	25	85	7	70	30	32	7	28	1.85
94245631--94245981	40	8.8	40	92	0	551	26	29	21	23	1.99
94247382--94248196	47	17.3	47	93	4	1322	30	30	8	31	1.86
94247432--94247510	25	3.3	25	66	16	76	31	29	5	34	1.79
94247382--94248196	96	8.6	96	94	3	1367	30	30	8	31	1.86
94251584--94251711	43	3.0	43	79	6	152	28	18	21	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94268572--94268634	30	2.1	30	87	0	90	28	25	7	38	1.84
94274997--94275112	37	3.1	37	94	0	196	26	31	18	23	1.98
94275231--94275728	47	10.7	47	89	6	732	29	29	8	31	1.87
94275299--94275707	192	2.2	190	95	2	727	30	29	8	32	1.87
94275299--94275728	239	1.8	233	93	3	700	30	29	8	31	1.87
94280411--94280470	24	2.5	24	86	5	77	21	16	28	33	1.95
94282574--94282615	18	2.3	18	84	8	50	7	19	4	69	1.31
94285912--94286004	42	2.2	42	94	0	159	39	22	10	26	1.87
94286148--94286244	26	3.8	26	83	1	117	24	20	26	27	1.99
94286294--94286350	20	2.9	21	85	10	68	33	21	7	38	1.80
94287046--94287129	27	3.1	27	93	3	134	20	26	22	30	1.98
94287188--94287410	27	8.2	27	72	8	130	32	11	17	38	1.86
94287278--94287410	54	2.5	53	82	3	149	30	12	19	37	1.88
94287409--94287771	27	13.4	27	80	4	246	37	8	22	31	1.84
94287558--94287690	28	4.9	27	80	7	151	32	8	21	37	1.83
94287558--94287690	55	2.4	55	81	6	153	32	8	21	37	1.83
94287409--94287771	54	6.7	54	78	5	277	37	8	22	31	1.84
94290044--94290100	30	1.9	30	85	0	78	26	17	35	21	1.95
94292628--94292805	27	6.6	27	84	3	205	30	27	14	27	1.95
94292649--94292804	82	1.9	81	86	3	224	30	27	14	27	1.95
94293365--94293389	13	1.9	13	100	0	50	32	16	20	32	1.94
94294866--94294916	20	2.5	20	96	0	93	23	21	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94298488--94298523	16	2.2	17	90	5	56	2	33	8	55	1.44
94302671--94302945	38	7.2	38	86	0	370	33	25	19	22	1.97
94309067--94309153	44	2.0	44	86	4	122	34	22	19	22	1.97
94310342--94310408	3	22.3	3	82	11	84	64	1	0	34	1.03
94311414--94311578	45	3.7	45	89	0	240	46	15	18	20	1.84
94311414--94311619	45	4.6	45	87	2	236	46	14	18	20	1.84
94313250--94313421	93	1.8	93	93	0	299	20	20	30	28	1.98
94313254--94313428	46	3.8	46	77	13	196	20	20	30	29	1.97
94322588--94322681	38	2.5	38	92	0	152	26	15	3	54	1.57
94323229--94323337	40	2.7	39	83	7	137	18	20	9	52	1.72
94323229--94323377	41	3.7	40	81	7	131	19	19	8	52	1.71
94323283--94323396	41	2.8	40	74	13	108	21	20	7	50	1.74
94334592--94334776	49	3.7	49	79	10	180	25	19	24	30	1.98
94334592--94334767	51	3.5	48	81	9	194	25	18	25	30	1.98
94350098--94350192	48	2.0	48	100	0	190	15	27	29	27	1.96
94351114--94351198	42	2.0	42	100	0	170	32	21	7	38	1.80
94354991--94355131	27	5.2	27	80	11	164	34	21	24	19	1.97
94354991--94355134	54	2.7	54	91	2	227	34	22	24	19	1.97
94360400--94360489	45	2.0	44	97	2	171	53	6	12	27	1.63
94372110--94372171	27	2.3	27	88	0	88	56	6	16	20	1.62
94373026--94373083	25	2.3	25	100	0	116	37	18	3	39	1.68
94385941--94385970	14	2.1	15	93	6	53	13	10	13	63	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94388912--94389060	27	5.4	27	91	3	217	28	13	27	30	1.94
94388912--94389060	55	2.7	55	91	0	226	28	13	27	30	1.94
94412082--94412342	39	6.7	40	87	8	319	24	27	22	25	2.00
94412082--94412342	77	3.3	78	85	9	313	24	27	22	25	2.00
94420105--94420364	38	6.7	40	87	8	319	24	27	22	25	2.00
94420105--94420364	79	3.3	79	85	10	313	24	27	22	25	2.00
94433356--94433398	21	2.0	21	100	0	86	18	13	20	46	1.83
94433950--94434132	40	4.6	40	85	6	246	25	22	26	25	2.00
94435429--94435456	4	7.0	4	100	0	56	75	0	0	25	0.81
94437689--94437837	43	3.5	43	76	9	126	27	18	23	30	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356