Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  345  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110459448--110459571
4
31.5
4
83
3
81
41
0
57
1
1.08
110459447--110459496
20
2.5
20
100
0
100
48
0
52
0
1.00
110459448--110459571
38
3.4
38
77
4
121
41
0
57
1
1.08
110459859--110459933
18
4.4
18
66
17
61
44
1
2
52
1.23
110460846--110460910
4
15.5
4
73
20
53
67
0
29
3
1.05
110460840--110460905
21
3.1
20
82
10
78
66
0
30
3
1.06
110460841--110460910
25
2.8
25
95
2
122
67
0
30
2
1.05
110467305--110468467
144
8.1
142
86
6
1539
27
6
7
58
1.50
110468955--110468979
6
4.2
6
100
0
50
0
16
0
84
0.63
110492013--110492238
122
1.9
121
82
6
287
30
13
21
34
1.92
110491945--110492454
191
2.7
191
93
3
850
30
14
21
33
1.93
110492307--110492937
67
8.9
71
80
11
622
31
15
19
33
1.93
110493539--110493607
35
2.0
35
100
0
138
17
50
11
20
1.76
110494769--110494823
22
2.5
23
77
13
62
43
0
3
52
1.18
110496208--110496247
14
2.9
15
85
10
50
47
15
2
35
1.58
110496172--110496239
34
2.0
35
91
2
111
48
13
5
32
1.66
110497037--110497074
18
2.1
19
90
5
60
26
0
2
71
1.00
110497401--110497541
51
2.8
51
79
4
142
40
9
16
34
1.80
110509142--110509181
12
3.4
12
89
3
64
70
0
2
27
1.01
110509174--110509219
15
3.0
16
81
9
60
45
0
2
52
1.13
110509288--110509339
15
3.6
15
80
12
56
44
0
1
53
1.11
110509382--110509415
16
2.1
16
88
0
50
44
0
5
50
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110509172--110509573
119
3.4
120
96
1
745
42
1
4
50
1.34
110509409--110509457
15
3.4
15
83
10
59
42
0
2
55
1.11
110509535--110509576
15
2.7
16
82
14
52
45
0
2
52
1.13
110509526--110509567
15
2.9
15
82
10
52
47
0
0
52
1.00
110509803--110509852
16
3.1
16
88
5
66
20
34
4
42
1.70
110509984--110510063
37
2.1
40
83
6
103
53
2
1
42
1.22
110514993--110515033
21
2.0
21
90
0
64
19
29
21
29
1.98
110523363--110523401
17
2.3
17
86
0
51
79
0
20
0
0.73
110550335--110550372
11
3.5
11
82
10
51
68
0
2
28
1.03
110550365--110550517
15
10.5
15
69
18
74
45
1
3
50
1.26
110550573--110550729
37
4.1
36
65
16
102
42
1
4
51
1.33
110550363--110550755
116
3.4
118
92
5
644
43
2
4
50
1.33
110550688--110550733
12
3.9
12
81
16
51
43
0
2
54
1.12
110550971--110551025
16
3.5
16
80
5
67
21
34
3
40
1.71
110551155--110551232
36
2.2
35
80
11
86
52
2
1
43
1.23
110556104--110556144
21
2.0
21
90
0
64
19
29
21
29
1.98
110564488--110564525
17
2.3
17
86
4
51
78
0
21
0
0.74
110582418--110582447
14
2.1
15
93
6
53
73
0
0
26
0.84
110583384--110583423
20
2.0
20
85
9
55
2
17
25
55
1.55
110583991--110584074
44
1.9
44
83
9
109
21
26
23
28
1.99
110584365--110584591
44
5.2
44
67
10
176
27
24
21
26
1.99
110584212--110584639
88
4.9
88
88
2
546
25
23
22
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110584497--110584635
44
3.2
44
69
11
113
25
23
23
27
2.00
110588988--110589036
19
2.5
20
80
6
57
42
12
18
26
1.85
110602854--110602902
19
2.5
20
80
6
57
42
12
18
26
1.85
110605134--110605163
14
2.1
15
93
6
53
73
0
0
26
0.84
110606102--110606141
20
2.0
20
85
9
55
2
17
25
55
1.55
110612520--110612559
20
1.9
20
85
10
53
52
2
7
37
1.43
110614903--110615064
42
3.9
42
82
3
175
45
17
20
17
1.86
110614938--110615006
21
3.3
21
67
15
61
49
18
17
14
1.80
110620201--110620239
19
2.1
19
86
13
55
66
10
7
15
1.43
110620441--110620516
20
4.0
19
76
11
75
38
0
3
57
1.17
110620483--110620577
20
4.4
20
74
25
72
37
0
4
57
1.18
110620542--110620583
10
4.1
10
79
14
50
30
0
7
61
1.22
110621612--110621691
21
3.9
21
77
3
83
17
25
17
40
1.91
110622160--110622200
20
2.0
22
85
9
59
24
4
31
39
1.76
110624405--110624440
18
1.9
18
88
5
54
36
2
2
58
1.27
110624447--110624494
20
2.4
20
86
13
64
35
0
8
56
1.30
110625818--110625844
3
9.0
3
100
0
54
66
0
0
33
0.92
110627605--110627701
40
2.3
41
79
12
99
25
27
16
29
1.97
110639841--110639879
18
2.2
18
90
4
62
66
5
0
28
1.12
110646854--110647010
47
3.3
47
92
0
233
26
31
7
35
1.84
110651484--110651535
27
1.9
27
84
7
70
53
5
11
28
1.60
110651909--110651959
3
17.0
3
76
15
52
64
1
0
33
1.05
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110651909--110651959
15
3.4
15
89
5
68
64
1
0
33
1.05
110659839--110659899
30
2.0
30
100
0
122
65
0
4
29
1.13
110667972--110668081
26
4.2
26
92
2
177
38
23
4
33
1.75
110677912--110677942
12
2.6
12
94
0
53
35
32
16
16
1.91
110678009--110678066
31
1.9
31
85
3
82
32
10
5
51
1.58
110682133--110682162
15
2.1
15
93
6
53
43
13
0
43
1.43
110684971--110685043
35
2.1
35
100
0
146
31
6
21
39
1.80
110692606--110693139
81
6.6
81
81
3
590
30
22
18
28
1.97
110692606--110693147
162
3.3
162
86
1
755
30
22
18
28
1.97
110692606--110693139
243
2.2
243
82
2
651
30
22
18
28
1.97
110694452--110694503
27
1.9
27
100
0
104
40
7
19
32
1.80
110697206--110697246
21
2.0
21
90
0
64
19
29
21
29
1.98
110703436--110703882
81
5.5
81
89
2
650
29
21
21
28
1.98
110703436--110704122
162
4.3
163
82
7
817
29
21
20
28
1.98
110703733--110704028
144
2.1
144
84
1
387
31
22
20
26
1.98
110703904--110704112
81
2.6
81
86
1
294
31
21
20
27
1.97
110703678--110704104
225
1.9
225
87
1
633
30
21
21
27
1.98
110710320--110710576
132
1.9
133
88
3
385
28
19
17
33
1.95
110710357--110710691
132
2.5
132
82
2
370
28
20
16
34
1.95
110725785--110725815
16
1.9
16
93
0
53
16
12
6
64
1.47
110725712--110726141
89
5.0
87
81
9
524
27
17
20
35
1.94
110725872--110725906
14
2.5
14
90
0
61
17
17
5
60
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110725801--110726213
165
2.5
162
90
3
655
27
18
20
33
1.96
110725907--110726049
76
1.9
73
91
0
205
31
16
23
28
1.96
110726072--110726281
73
2.9
73
87
4
316
27
19
23
30
1.98
110726072--110726281
74
2.9
72
87
6
298
27
19
23
30
1.98
110726220--110726431
88
2.4
87
85
6
268
29
17
20
32
1.96
110726202--110726518
88
3.6
85
79
8
264
27
16
19
36
1.93
110733466--110733515
24
2.1
24
100
0
100
40
20
0
40
1.52
110738397--110738484
26
3.2
26
64
30
65
39
5
23
30
1.78
110738378--110738491
57
2.0
57
100
0
228
42
5
22
29
1.76
110739841--110739972
25
5.5
23
68
16
65
34
4
3
57
1.34
110739906--110740025
27
4.5
27
68
16
70
33
7
4
55
1.47
110739855--110740062
25
8.2
25
68
14
79
34
6
4
54
1.45
110739906--110740048
25
5.4
28
71
12
88
32
7
4
54
1.50
110740040--110740098
23
2.8
20
72
16
57
32
6
5
55
1.48
110740215--110740262
16
3.1
15
90
6
69
31
2
2
64
1.16
110740215--110740266
8
6.5
8
82
8
61
30
1
1
65
1.14
110740971--110741023
25
2.1
25
82
6
63
35
5
3
54
1.42
110742391--110742437
19
2.5
19
86
6
60
17
2
2
78
0.94
110743167--110743204
20
2.0
20
94
5
69
57
5
15
21
1.57
110743170--110743215
20
2.2
21
80
7
58
58
6
17
17
1.59
110744180--110744209
14
2.1
14
93
0
51
33
3
0
63
1.11
110747089--110747326
108
2.2
108
83
3
293
25
21
24
28
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
110747145--110749599
99
24.7
99
89
2
3448
22
20
28
29
1.98
110754799--110754825
13
2.1
13
100
0
54
37
14
7
40
1.74
110757777--110757828
19
2.7
18
82
14
52
25
0
1
73
0.94
110757777--110757833
27
2.1
28
86
3
80
28
0
1
70
0.98
110757797--110757833
19
2.0
18
89
5
56
27
0
0
72
0.84
110760752--110760791
19
2.2
19
86
4
55
22
10
12
55
1.67
110762393--110762479
43
2.0
44
95
2
158
35
12
22
28
1.91
110781345--110781459
42
2.7
42
86
4
160
29
24
13
32
1.94
110781577--110781663
31
2.8
31
91
0
138
25
27
19
27
1.99
110787452--110787487
14
2.8
12
84
15
54
25
0
0
75
0.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356