genome.fa.s11.2.7.7.80.10.50.1000.276.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  276  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90334564--90334738	54	3.3	54	85	3	214	38	21	9	30	1.85
90334612--90334809	81	2.4	81	82	1	227	39	21	8	29	1.83
90334612--90334794	54	3.4	54	80	1	170	39	22	8	28	1.83
90334664--90334781	27	4.4	27	80	4	85	40	18	8	32	1.81
90334765--90334944	54	3.3	54	87	0	234	31	21	7	38	1.82
90334666--90334835	81	2.1	81	80	2	180	39	20	7	32	1.81
90334788--90334946	81	2.0	81	91	2	257	29	21	8	40	1.82
90334788--90334946	27	5.9	27	87	2	221	29	21	8	40	1.82
90334775--90334954	81	2.2	81	84	3	247	32	21	7	37	1.82
90334939--90335142	27	7.6	27	87	3	268	35	19	20	24	1.96
90334815--90334981	81	2.1	80	79	6	176	32	21	8	36	1.85
90335652--90335724	27	2.7	27	87	2	94	19	24	19	36	1.94
90335862--90335997	31	4.4	31	84	3	150	19	16	14	49	1.80
90335885--90335981	6	15.8	6	74	16	74	19	17	15	47	1.83
90338074--90338126	18	2.9	18	82	0	70	45	9	7	37	1.65
90338137--90338177	18	2.3	18	91	0	64	31	19	19	29	1.96
90338989--90339029	11	3.5	11	90	6	55	26	19	2	51	1.59
90339423--90339471	25	2.0	25	84	8	64	0	30	2	67	1.02
90341055--90341093	19	2.1	19	85	9	53	30	12	15	41	1.85
90341738--90341805	34	2.0	34	85	5	93	20	25	25	29	1.99
90341228--90341930	351	2.0	351	97	0	1334	30	25	18	25	1.98
90343835--90344485	47	13.6	47	93	2	1050	29	28	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90343835--90344485	96	6.8	96	94	1	1080	29	28	8	33	1.86
90348480--90348910	40	10.8	40	92	1	677	25	26	21	25	2.00
90350415--90350490	22	3.3	22	64	10	62	27	30	11	30	1.92
90350340--90350987	47	13.6	47	93	1	1035	28	28	9	33	1.88
90350340--90350987	96	6.8	94	93	1	1035	28	28	9	33	1.88
90357636--90357686	26	2.0	26	88	0	75	43	15	15	25	1.86
90360725--90360764	21	1.9	21	89	0	62	42	17	27	12	1.85
90363055--90363126	35	2.1	35	91	0	117	36	12	25	26	1.91
90368234--90368305	35	2.1	35	91	0	117	36	12	25	26	1.91
90369656--90369717	30	2.1	29	84	3	79	46	20	9	22	1.80
90372397--90372455	31	2.0	31	83	6	77	25	22	11	40	1.88
90376517--90376567	23	2.2	23	82	6	59	41	13	9	35	1.78
90382237--90382315	37	2.1	37	88	4	115	25	30	18	25	1.98
90382434--90382593	47	3.4	47	88	0	230	27	30	9	32	1.88
90385978--90386160	40	4.6	40	79	6	185	24	26	22	26	2.00
90386455--90386533	29	2.7	29	86	5	106	27	32	15	24	1.95
90388438--90388516	37	2.1	37	88	4	115	25	30	18	25	1.98
90388635--90388841	47	4.4	47	89	0	297	28	29	9	32	1.88
90392476--90392539	32	2.0	32	100	0	128	40	12	9	37	1.75
90397607--90397657	24	2.1	24	100	0	102	37	11	25	25	1.90
90419905--90420075	93	1.8	93	91	0	279	29	28	19	22	1.98
90419900--90420072	46	3.7	46	76	10	190	30	27	19	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90427221--90427258	19	2.0	20	85	15	53	39	23	0	36	1.55
90427486--90427656	93	1.8	93	89	0	270	29	28	19	22	1.98
90427481--90427653	46	3.7	46	76	10	181	30	27	19	23	1.98
90430508--90430581	30	2.4	29	82	8	85	62	9	12	16	1.54
90431777--90431819	15	2.9	14	83	10	59	72	0	0	27	0.85
90433099--90433128	15	2.0	15	100	0	60	53	0	20	26	1.46
90434784--90434826	21	2.0	21	82	8	52	41	0	0	58	0.98
90434797--90434826	10	2.8	11	90	10	53	33	0	0	66	0.92
90434792--90434825	10	3.2	10	88	12	50	38	0	0	61	0.96
90437440--90437498	31	1.9	31	85	0	82	44	10	6	38	1.65
90437818--90437869	24	2.2	24	85	0	68	53	5	3	36	1.43
90440584--90440627	20	2.0	23	87	12	67	43	2	13	40	1.57
90443131--90443155	13	1.9	13	100	0	50	48	16	0	36	1.46
90459002--90459121	56	2.1	56	96	0	222	44	10	23	22	1.83
90460250--90460474	40	5.7	40	85	5	278	24	21	28	26	1.99
90463248--90463446	68	3.0	64	81	8	168	24	28	16	30	1.96
90464986--90465079	40	2.4	39	82	5	100	27	14	28	28	1.96
90471211--90471267	25	2.3	25	93	0	96	24	17	21	36	1.94
90475427--90475651	40	5.7	40	85	5	269	25	28	21	24	1.99
90475429--90475651	119	1.9	120	84	6	301	25	27	21	24	1.99
90476742--90476861	56	2.1	56	100	0	240	22	24	9	44	1.82
90494682--90494866	50	3.8	50	85	9	258	29	22	15	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90494712--90494878	46	3.6	46	83	11	216	28	23	14	33	1.94
90494682--90494878	96	2.1	95	91	4	317	29	22	15	32	1.95
90497998--90498201	49	4.0	50	83	10	241	32	29	13	24	1.94
90498082--90498200	58	2.0	59	98	1	231	31	31	13	23	1.93
90498091--90498181	28	3.2	28	66	22	80	27	31	15	25	1.95
90499452--90499597	37	4.0	37	93	1	242	24	21	16	36	1.94
90499561--90499829	46	5.6	46	82	10	322	27	22	14	35	1.93
90499604--90499823	52	4.3	52	82	8	281	26	23	14	35	1.93
90499561--90499829	98	2.7	98	92	0	448	27	22	14	35	1.93
90502633--90502671	17	2.4	17	91	4	62	69	0	0	30	0.89
90504091--90504141	24	2.1	25	88	3	77	56	9	0	33	1.32
90504214--90504253	21	1.9	21	89	0	62	57	2	2	37	1.26
90504301--90504342	20	2.0	21	86	4	59	57	9	0	33	1.31
90506328--90506566	89	2.7	87	86	4	327	35	19	15	29	1.93
90506488--90506639	74	2.1	73	91	1	241	33	24	15	26	1.95
90506396--90506954	162	3.4	163	87	4	792	32	22	17	28	1.96
90506813--90506953	74	1.9	74	91	2	230	27	22	19	30	1.98
90519333--90519372	21	1.9	21	89	0	62	57	2	2	37	1.26
90519421--90519462	20	2.0	21	86	4	59	57	9	0	33	1.31
90519571--90519619	24	2.0	24	88	0	71	57	2	2	38	1.22
90533502--90533640	75	1.9	71	83	14	176	33	22	17	27	1.96
90533648--90533948	64	4.7	63	77	17	245	33	20	16	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90546043--90546093	24	2.1	25	88	3	77	56	9	0	33	1.32
90546166--90546205	21	1.9	21	89	0	62	57	2	2	37	1.26
90546254--90546295	20	2.0	21	86	4	59	57	9	0	33	1.31
90547952--90547977	10	2.6	10	100	0	52	7	0	0	92	0.39
90549556--90549972	158	2.6	160	81	4	468	34	12	15	36	1.86
90551771--90551880	26	4.2	26	94	2	177	34	4	24	36	1.76
90553500--90553640	27	5.2	27	87	2	176	17	23	22	36	1.95
90553500--90553640	54	2.6	55	88	2	196	17	23	22	36	1.95
90558041--90558841	401	2.0	401	99	0	1593	27	23	16	32	1.96
90559581--90559640	30	2.0	30	100	0	120	43	30	13	13	1.82
90564118--90564148	9	3.4	9	100	0	62	29	0	25	45	1.54
90567141--90567476	161	2.1	161	98	0	645	18	16	32	32	1.94
90567650--90567722	21	3.4	21	75	3	74	19	31	26	23	1.98
90570866--90570910	22	2.0	22	82	4	54	13	42	22	22	1.88
90574951--90575002	25	2.3	24	84	15	67	61	5	1	30	1.30
90575153--90575182	15	2.0	15	93	0	51	73	3	10	13	1.21
90576559--90576706	74	2.0	74	93	2	253	39	16	17	27	1.91
90577143--90577183	22	2.0	20	85	9	55	39	2	2	56	1.26
90577160--90577236	32	2.5	32	79	8	79	42	1	1	54	1.16
90577182--90577225	20	2.2	21	80	12	56	40	0	2	56	1.11
90577171--90577308	58	2.4	58	84	8	176	43	0	2	53	1.18
90591224--90591288	29	2.2	28	80	17	71	47	1	3	47	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90591409--90591456	8	6.5	8	81	18	68	41	0	0	58	0.98
90591421--90591462	20	2.1	20	95	0	75	47	0	0	52	1.00
90591413--90591470	28	2.1	28	83	6	73	50	0	0	50	1.00
90591515--90591564	4	12.8	4	82	16	52	80	0	20	0	0.72
90591537--90591565	10	2.7	11	89	10	51	89	0	10	0	0.48
90591514--90591565	10	4.9	10	75	11	50	80	0	19	0	0.71
90593876--90594061	67	2.8	67	94	2	313	19	31	16	32	1.94
90594495--90594890	211	1.9	212	90	4	638	55	20	5	18	1.61
90599508--90599545	20	1.9	19	85	15	51	44	0	7	47	1.32
90604230--90604275	9	5.0	9	89	2	56	30	15	15	39	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356