Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  280  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91345312--91345408
50
2.0
50
81
13
116
26
3
3
67
1.21
91345200--91345421
25
9.1
24
71
13
102
27
3
3
65
1.25
91346849--91346881
10
3.0
11
86
13
50
63
0
9
27
1.24
91347345--91347386
3
14.0
3
89
0
66
61
0
4
33
1.17
91347441--91347483
18
2.3
18
84
4
50
60
2
11
25
1.43
91352885--91352987
38
2.6
39
72
13
95
24
18
25
32
1.97
91358366--91358417
15
3.0
18
84
15
58
59
0
0
40
0.97
91361565--91361622
19
2.9
19
82
5
62
67
3
3
25
1.22
91361810--91361868
19
3.1
20
81
13
63
64
1
5
28
1.24
91361839--91361896
30
1.9
30
86
6
82
62
0
1
36
1.06
91362196--91362238
9
4.7
9
80
5
50
72
4
2
20
1.14
91362196--91362284
28
3.2
28
73
10
85
66
4
3
25
1.26
91362224--91362272
26
1.9
25
87
4
71
61
6
2
30
1.32
91362285--91362340
20
2.7
21
83
8
62
60
0
7
32
1.24
91362296--91362340
20
2.1
22
88
8
67
60
0
8
31
1.28
91362326--91362359
15
2.3
15
89
0
50
73
0
2
23
0.97
91362944--91362985
19
2.2
19
91
0
66
21
7
0
71
1.09
91371223--91371356
38
3.5
38
83
2
133
30
25
23
20
1.98
91371253--91371356
38
2.7
38
90
0
154
29
25
25
20
1.99
91377140--91377273
38
3.5
38
82
2
151
31
26
23
19
1.98
91379765--91379827
15
4.6
14
76
17
53
31
0
9
58
1.30
91379760--91379827
12
5.1
12
74
19
55
32
0
8
58
1.29
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91379891--91379948
14
4.3
14
77
18
52
39
0
5
55
1.22
91379881--91379970
39
2.4
37
85
9
110
36
1
4
57
1.26
91379920--91379993
24
3.1
25
76
19
70
33
2
5
58
1.35
91380099--91380141
9
4.9
9
81
16
54
39
0
2
58
1.11
91380095--91380128
11
3.3
11
84
16
54
38
0
5
55
1.24
91380106--91380146
15
2.9
15
85
7
50
36
0
2
60
1.10
91380320--91380355
3
12.0
3
93
0
63
36
0
0
63
0.94
91380344--91380403
23
2.8
21
85
12
70
35
1
6
56
1.35
91380356--91380408
21
2.5
21
81
0
70
33
1
9
54
1.43
91389224--91389286
21
3.0
21
95
0
117
34
38
12
14
1.84
91392338--91392557
75
2.9
76
81
9
256
34
15
18
32
1.92
91392488--91392966
87
5.4
87
82
6
407
28
16
18
35
1.93
91394577--91394654
3
24.7
3
75
12
59
32
0
7
60
1.25
91394694--91394768
24
3.0
24
78
16
80
36
2
2
58
1.26
91394709--91394768
24
2.4
26
86
10
81
35
1
3
60
1.23
91394709--91394833
23
5.7
22
66
25
61
33
3
4
58
1.35
91394702--91394826
24
5.1
24
76
17
80
34
2
4
58
1.32
91394708--91394794
40
2.2
40
81
10
97
36
1
3
58
1.22
91394723--91394803
37
2.2
37
86
6
110
37
0
4
58
1.20
91394753--91394873
24
5.2
25
74
16
73
33
5
4
56
1.45
91394938--91394981
11
4.1
11
85
8
56
38
0
2
59
1.10
91394933--91394981
18
2.6
18
83
6
62
38
0
4
57
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91395171--91395236
21
3.2
21
77
14
75
33
1
7
57
1.36
91395171--91395230
23
2.8
21
85
12
70
35
1
6
56
1.35
91403688--91403774
43
2.0
43
97
0
165
24
40
4
31
1.75
91404562--91404592
2
15.5
2
100
0
62
48
0
51
0
1.00
91407946--91408008
30
2.1
30
91
5
101
58
11
4
25
1.51
91414048--91414523
243
2.0
243
91
0
781
27
17
18
36
1.93
91417160--91417203
20
2.3
18
84
7
52
27
2
2
68
1.14
91423763--91423799
14
2.6
14
100
0
74
27
51
13
8
1.69
91423887--91423958
17
4.5
16
81
8
67
13
12
1
72
1.20
91423905--91423960
22
2.5
23
80
13
64
16
10
0
73
1.10
91434807--91434984
27
6.6
26
79
10
153
26
15
29
28
1.96
91434808--91434958
54
2.8
54
84
7
189
26
16
29
27
1.97
91434808--91434963
82
1.9
81
84
6
208
26
16
30
27
1.96
91434804--91434984
82
2.2
81
80
4
204
26
16
29
28
1.96
91442691--91442864
27
6.5
27
81
7
144
26
16
29
28
1.97
91442691--91442838
52
2.8
54
83
8
178
27
16
29
27
1.97
91442691--91442843
79
1.9
80
83
9
197
26
16
29
27
1.97
91459270--91459486
90
2.5
88
82
6
239
41
19
8
30
1.81
91459270--91459486
87
2.5
90
82
5
250
41
19
8
30
1.81
91459565--91459670
10
11.7
9
70
16
58
62
2
2
32
1.24
91459878--91459930
9
5.9
9
73
8
54
30
1
1
66
1.13
91459877--91459948
38
1.9
36
83
10
92
31
2
1
63
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91459922--91459975
20
2.7
19
88
8
72
50
3
0
46
1.19
91459940--91459987
19
2.7
18
87
6
62
45
6
0
47
1.27
91459985--91460034
19
2.5
20
80
6
66
36
2
0
62
1.07
91461377--91461410
17
2.0
17
94
0
59
67
0
2
29
1.05
91465071--91465124
24
2.2
24
83
9
65
38
16
18
25
1.92
91468347--91468398
3
17.7
3
84
4
52
34
7
0
57
1.27
91468347--91468404
15
3.7
15
76
14
55
34
6
0
58
1.25
91470547--91470647
41
2.5
41
90
0
157
35
25
20
17
1.95
91470814--91470858
14
3.2
14
83
0
63
28
0
22
48
1.50
91470903--91471031
7
18.1
7
69
10
66
21
0
40
37
1.54
91470941--91471028
21
4.1
21
75
7
79
22
0
39
37
1.55
91475208--91475302
46
2.1
46
100
0
190
21
9
12
56
1.64
91477166--91477218
21
2.5
21
90
0
79
30
37
9
22
1.86
91479401--91479491
29
3.1
29
96
1
164
30
8
13
47
1.73
91481106--91481228
28
4.4
28
90
2
176
26
13
27
32
1.93
91481131--91481241
28
4.0
27
89
3
134
29
12
25
32
1.93
91489110--91489232
28
4.4
28
88
2
167
26
13
26
33
1.93
91489135--91489245
28
4.0
27
80
10
109
29
12
24
33
1.92
91491201--91491243
22
2.0
21
86
4
59
44
0
0
55
0.99
91492436--91492490
28
2.0
28
92
7
94
21
14
38
25
1.92
91497729--91497789
22
2.7
22
79
2
59
34
19
26
19
1.96
91505480--91505677
27
7.3
27
88
0
261
29
23
7
39
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91505480--91505677
81
2.4
81
89
0
288
29
23
7
39
1.81
91505690--91505835
27
5.4
27
83
3
87
39
19
10
30
1.86
91505710--91505945
27
8.7
27
76
7
183
40
19
8
31
1.82
91507042--91507175
42
3.2
42
98
0
259
31
14
20
33
1.93
91507199--91507344
31
4.7
31
93
0
249
28
15
26
29
1.96
91512998--91513108
27
4.1
27
82
5
127
37
20
25
16
1.93
91513489--91513518
8
3.8
8
90
0
51
3
23
23
50
1.64
91514502--91514575
24
3.1
24
90
0
121
24
43
1
31
1.63
91523844--91523993
55
2.8
54
80
4
149
26
15
29
28
1.96
91523816--91523993
27
6.6
27
77
6
146
25
15
28
30
1.96
91523817--91523972
82
1.9
81
81
6
190
25
16
28
30
1.96
91531849--91531998
55
2.8
54
80
4
149
26
15
29
28
1.96
91531821--91531998
27
6.6
27
77
6
146
25
15
28
30
1.96
91531822--91531977
82
1.9
81
81
6
190
25
16
28
30
1.96
91540496--91540719
40
5.6
40
83
8
285
26
26
22
25
2.00
91540496--91540719
83
2.8
80
85
6
285
26
26
22
25
2.00
91549200--91549240
21
2.0
21
90
9
66
46
0
24
29
1.53
91557304--91557370
28
2.4
28
92
2
118
40
0
4
55
1.20
91557813--91557873
20
3.1
19
86
6
86
67
3
0
29
1.07
91564437--91564491
7
7.9
7
89
0
56
27
25
0
47
1.52
91564434--91564460
14
1.9
14
100
0
54
22
14
0
62
1.31
91564451--91564490
21
1.9
21
89
0
62
30
30
0
40
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
91564515--91564563
20
2.5
20
100
0
98
16
14
0
69
1.19
91569199--91569438
67
3.6
68
80
3
263
35
18
23
23
1.96
91573109--91573281
64
2.7
64
78
7
179
26
30
15
27
1.96
91573497--91573558
29
2.1
29
96
0
115
43
24
1
30
1.64
91577618--91577661
22
2.0
22
90
0
70
25
9
4
61
1.45
91579290--91579430
57
2.4
58
78
3
142
31
21
16
31
1.95
91583786--91583834
22
2.2
22
100
0
98
20
32
34
12
1.90
91590419--91590527
57
1.9
58
86
1
157
35
22
11
29
1.90
91593974--91594003
12
2.5
12
100
0
60
16
43
26
13
1.85
91600009--91600060
23
2.3
22
83
6
68
7
21
0
71
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356