genome.fa.s11.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  110  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34914808--34914894	27	3.2	27	90	0	129	26	19	18	35	1.95
34914879--34914952	27	2.7	27	87	6	105	27	12	21	39	1.89
34914879--34914964	27	3.2	26	83	8	102	27	11	23	37	1.89
34914954--34915045	27	3.4	27	90	0	157	38	9	25	27	1.87
34914932--34915070	54	2.6	54	75	4	163	34	8	24	32	1.86
34922142--34922187	20	2.3	20	82	14	60	28	28	17	26	1.98
34922154--34922197	19	2.2	20	84	4	54	34	25	18	22	1.96
34925272--34925313	13	2.9	15	73	20	52	47	0	23	28	1.52
34925859--34925988	47	2.8	47	88	2	172	23	16	27	32	1.96
34933515--34933582	30	2.3	30	92	5	111	16	27	32	23	1.96
34935736--34935767	10	3.2	10	95	0	55	18	0	25	56	1.42
34935723--34935775	20	2.7	20	79	5	63	26	1	22	49	1.60
34937254--34937292	19	2.1	19	85	0	51	71	7	5	15	1.26
34937732--34937846	55	2.1	56	83	8	146	34	21	24	19	1.96
34937757--34937846	27	3.2	27	85	7	119	32	23	24	20	1.98
34937952--34938016	28	2.3	28	91	0	103	30	9	27	32	1.88
34944356--34944393	20	1.9	20	100	0	76	31	28	7	31	1.86
34945033--34945062	12	2.6	11	90	10	51	6	13	6	73	1.24
34950839--34950902	29	2.2	29	91	0	101	21	35	20	21	1.96
34952565--34952651	31	2.8	31	92	0	156	24	26	17	32	1.97
34952856--34952915	26	2.4	25	83	10	77	30	20	20	30	1.97
34952869--34952964	26	3.8	26	91	2	126	27	22	23	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34953096--34953143	25	1.9	25	86	0	69	29	16	22	31	1.96
34960638--34960699	28	2.2	28	97	2	115	35	24	3	37	1.72
34960903--34961163	40	6.6	40	84	3	305	26	25	22	25	2.00
34960903--34961163	80	3.3	80	83	2	337	26	25	22	25	2.00
34960903--34961163	120	2.2	119	86	4	355	26	25	22	25	2.00
34964183--34964254	31	2.3	31	90	0	117	26	25	13	34	1.93
34964459--34964543	26	3.4	25	82	9	84	30	21	20	28	1.98
34964472--34964567	26	3.8	26	86	2	117	28	21	23	26	1.99
34964699--34964746	25	1.9	25	95	0	87	29	12	22	35	1.91
34967495--34967766	39	7.0	39	90	0	427	23	28	25	23	1.99
34970503--34970625	25	5.0	25	73	12	101	29	21	24	24	1.99
34970489--34970635	49	3.0	49	83	1	186	29	21	23	25	1.99
34975050--34975089	20	2.0	20	100	0	80	25	25	20	30	1.99
34992341--34992525	79	2.3	80	80	8	216	25	26	23	24	2.00
34992320--34992525	40	5.2	40	80	8	224	25	26	22	24	2.00
34992793--34992975	79	2.3	81	82	7	214	26	26	21	25	2.00
34992068--34992975	452	2.0	452	97	0	1701	30	25	16	27	1.97
34992772--34992975	40	5.1	40	79	8	220	25	26	21	25	2.00
34997057--34997082	13	2.0	13	100	0	52	46	15	0	38	1.46
35000061--35000128	20	3.2	20	67	15	55	23	13	25	38	1.91
35000052--35000141	44	2.0	44	93	0	153	26	14	22	36	1.92
35004435--35004697	45	5.9	45	83	5	293	26	28	21	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35004690--35004813	38	3.3	38	86	2	178	33	23	20	22	1.97
35009008--35009055	24	2.0	24	84	8	62	45	2	8	43	1.45
35014516--35014681	48	3.5	48	82	8	198	29	21	25	22	1.99
35016514--35016552	20	2.0	20	84	0	51	30	5	17	46	1.70
35019715--35019757	2	22.0	2	90	4	70	0	48	0	51	1.00
35020926--35020953	2	14.0	2	100	0	56	50	0	50	0	1.00
35029742--35029796	28	1.9	29	88	3	85	9	21	49	20	1.76
35035142--35035199	30	1.9	30	93	6	100	15	29	34	20	1.94
35039305--35039481	27	6.6	27	82	7	180	28	28	15	27	1.96
35039305--35039481	55	3.3	54	81	6	198	28	28	15	27	1.96
35039326--35039480	82	1.9	80	85	5	213	28	29	15	27	1.96
35075645--35075682	20	1.9	19	94	5	67	68	13	2	15	1.32
35077531--35077572	10	4.2	10	79	8	50	16	0	35	47	1.47
35079667--35079835	46	3.6	46	80	6	198	23	28	18	28	1.98
35079658--35079835	94	1.9	93	86	5	252	23	29	18	28	1.98
35082058--35082117	30	2.0	30	87	6	86	28	25	10	36	1.88
35087020--35087065	24	2.0	23	83	12	58	32	17	6	43	1.75
35097334--35097546	47	4.6	47	86	2	288	25	27	16	30	1.97
35097423--35097690	47	5.7	46	77	8	152	23	26	18	31	1.97
35103896--35104070	46	3.8	45	72	15	160	22	19	27	30	1.98
35103893--35104063	93	1.8	93	87	5	256	22	19	27	30	1.98
35118878--35118969	43	2.1	43	84	7	116	23	18	29	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35130148--35130222	37	2.0	37	94	0	132	42	22	14	20	1.88
35135585--35135821	48	5.0	48	76	6	248	25	28	18	27	1.98
35135584--35135821	95	2.5	96	87	2	336	26	28	18	26	1.98
35138218--35138403	41	4.6	41	86	3	234	24	25	24	25	2.00
35144583--35144768	41	4.6	41	88	3	252	24	26	24	24	2.00
35149740--35149833	40	2.3	41	83	3	111	29	27	14	27	1.96
35156566--35156625	23	2.6	23	79	12	61	55	1	1	41	1.20
35156544--35156625	25	3.5	23	74	14	62	51	2	1	45	1.22
35156590--35156633	23	2.0	23	90	4	72	47	4	0	47	1.22
35157714--35157785	36	2.0	36	100	0	144	52	2	5	38	1.39
35157950--35158001	21	2.5	22	75	15	56	51	0	21	26	1.47
35160204--35160281	36	2.1	39	81	15	94	37	3	1	57	1.25
35160315--35160370	9	6.3	9	74	12	53	37	1	0	60	1.07
35160280--35160352	27	2.6	28	78	6	78	41	0	6	52	1.28
35160340--35160398	25	2.3	26	85	2	75	33	5	0	61	1.18
35160871--35160906	17	2.2	17	90	5	56	16	2	25	55	1.55
35163091--35163197	46	2.5	40	78	16	133	28	23	14	33	1.94
35163107--35163197	46	2.0	46	97	0	173	30	20	13	35	1.91
35163091--35163277	46	4.6	40	74	13	130	31	21	14	31	1.94
35163436--35163666	75	3.1	75	98	1	455	59	5	3	31	1.38
35163695--35163728	17	2.0	17	94	0	59	47	20	11	20	1.81
35164897--35164945	22	2.2	23	82	10	57	6	14	6	73	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35168849--35168959	40	2.8	41	89	6	167	26	26	24	23	2.00
35176053--35176231	40	4.5	40	87	3	247	26	25	22	25	2.00
35176053--35176231	79	2.3	80	86	3	247	26	25	22	25	2.00
35178384--35178428	22	2.0	21	84	16	56	57	13	0	28	1.36
35182645--35182698	25	2.2	25	89	0	81	33	20	22	24	1.97
35186524--35186694	93	1.8	93	87	2	254	30	29	18	21	1.97
35186517--35186689	46	3.8	45	73	13	145	31	29	17	21	1.96
35207193--35207377	79	2.3	81	82	7	218	24	22	28	24	1.99
35207193--35207377	40	4.7	40	81	6	207	24	22	28	24	1.99
35207246--35207410	79	2.1	79	82	6	192	26	20	27	24	1.99
35211585--35211705	42	2.8	42	78	11	138	23	19	28	28	1.98
35215347--35215378	12	2.4	14	90	10	50	62	6	0	31	1.20
35219285--35219323	18	2.2	18	86	9	53	61	0	7	30	1.24
35221756--35221819	31	2.1	31	85	8	87	25	6	10	57	1.56
35232853--35232950	43	2.3	43	81	0	115	27	17	24	30	1.97
35233713--35233761	22	2.2	20	77	19	53	18	0	26	55	1.43
35241118--35241529	48	8.6	48	97	0	754	34	6	28	30	1.81
35241670--35241765	37	2.6	37	91	0	147	25	21	29	23	1.99
35243056--35243404	40	8.8	40	93	0	583	21	22	28	27	1.99
35243568--35243618	25	2.0	25	81	7	59	35	13	29	21	1.92
35246599--35247000	48	8.6	48	89	6	637	35	5	27	31	1.81
35246674--35246947	85	3.1	85	86	11	404	34	6	27	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35246722--35246803	37	2.2	37	97	0	155	34	7	26	31	1.84
35246623--35247000	133	2.7	136	91	5	618	34	6	28	30	1.81
35246599--35246947	181	1.9	181	94	0	617	35	6	27	31	1.81
35247141--35247243	37	2.8	37	89	0	161	23	21	31	24	1.99
35249602--35249652	26	2.0	26	85	11	70	41	1	0	56	1.10
35251688--35251882	49	3.9	49	84	2	264	28	26	18	25	1.98
35251688--35251880	100	1.9	100	96	0	359	29	25	19	25	1.98
35252529--35252588	30	2.0	30	87	9	88	28	25	8	38	1.84
35264904--35265124	48	4.6	48	94	0	379	36	5	28	29	1.81
35265265--35265367	37	2.8	37	92	0	170	23	20	32	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356