genome.fa.s11.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  131  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41813969--41814006	16	2.3	17	82	17	53	28	18	2	50	1.61
41815809--41815863	26	2.1	26	89	0	83	36	21	20	21	1.95
41817360--41817398	18	2.2	18	95	0	69	51	7	20	20	1.72
41818451--41818526	40	1.9	40	86	0	107	14	32	21	31	1.93
41823722--41823747	13	2.0	13	100	0	52	30	30	15	23	1.95
41828883--41828935	26	2.0	26	96	0	97	28	7	16	47	1.74
41838066--41838111	24	1.9	24	95	0	83	50	6	8	34	1.59
41842087--41842144	30	1.9	30	85	0	80	29	24	8	37	1.85
41845015--41845192	28	6.4	28	89	2	234	32	28	13	25	1.94
41859827--41859914	45	2.0	45	93	0	149	36	21	18	23	1.95
41863087--41863249	39	4.4	38	82	13	166	25	22	28	23	1.99
41863087--41863218	39	3.6	40	87	10	169	24	22	28	24	1.99
41863087--41863249	37	4.4	39	83	12	170	25	22	28	23	1.99
41870968--41871145	40	4.5	39	84	6	207	22	24	28	24	1.99
41870968--41871145	80	2.2	80	87	3	243	22	24	28	24	1.99
41873061--41873085	13	1.9	13	100	0	50	20	32	24	24	1.98
41880661--41880694	16	2.1	17	88	5	52	20	17	14	47	1.83
41893844--41893904	24	2.5	24	86	5	79	34	29	16	19	1.94
41895615--41895679	29	2.3	29	83	2	78	43	3	24	29	1.69
41898517--41898542	10	2.6	10	100	0	52	34	7	30	26	1.85
41903064--41903236	40	4.3	40	94	1	285	27	26	20	26	1.99
41906039--41906084	18	2.5	20	75	13	53	67	0	21	10	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41908598--41908815	40	5.5	40	85	7	309	27	27	22	22	1.99
41914735--41914906	93	1.8	93	90	2	274	30	29	19	20	1.97
41914728--41914908	46	3.9	46	74	11	172	30	29	19	20	1.97
41919671--41919891	40	5.6	40	89	3	331	27	27	23	22	1.99
41923785--41923861	39	2.0	39	89	0	118	32	11	12	42	1.80
41923899--41923994	33	3.2	33	69	27	111	31	10	13	44	1.77
41926220--41926287	29	2.3	29	82	5	84	27	29	13	29	1.94
41926109--41926436	174	1.9	174	98	0	629	30	24	14	30	1.95
41926389--41926467	29	2.7	30	82	13	110	29	30	15	25	1.96
41943755--41943928	96	1.8	96	89	2	278	28	32	14	24	1.95
41943750--41943928	48	3.7	48	85	0	232	28	32	14	24	1.94
41944781--41944823	21	2.0	21	100	0	86	23	27	0	48	1.51
41947065--41947220	68	2.2	68	78	11	156	20	26	16	36	1.94
41955483--41955744	39	6.7	40	87	7	337	25	22	27	24	2.00
41964108--41964231	48	2.6	48	87	2	178	28	29	16	25	1.97
41967414--41967481	29	2.3	29	85	5	93	29	29	13	27	1.94
41967303--41967630	174	1.9	174	94	0	584	30	24	14	29	1.95
41967583--41967661	29	2.7	30	82	13	110	30	30	13	25	1.94
41972605--41972716	41	2.6	42	82	8	129	26	27	18	26	1.98
41975085--41975246	40	4.1	40	83	3	218	23	20	27	27	1.99
41983020--41983196	40	4.4	40	80	4	198	24	20	27	27	1.99
41985826--41985954	51	2.5	51	90	6	199	31	14	26	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41989363--41989663	40	7.6	40	85	6	373	25	21	27	25	1.99
41993326--41993356	14	2.2	14	100	0	62	51	6	0	41	1.27
41993803--41993900	27	3.5	28	90	2	135	26	13	28	31	1.94
41993831--41993913	27	3.0	27	87	5	96	30	12	25	32	1.92
42000244--42000296	27	2.0	27	85	7	72	32	26	22	18	1.97
42000724--42000784	27	2.3	27	82	5	70	27	21	22	27	1.99
42005001--42005065	28	2.3	28	91	0	103	32	7	27	32	1.85
42006134--42006166	12	2.6	13	85	9	50	45	0	45	9	1.35
42006965--42007017	27	2.0	27	88	7	81	32	26	24	16	1.97
42022382--42022541	27	5.9	27	77	7	128	31	27	15	25	1.96
42062050--42062221	40	4.3	41	83	5	210	25	20	27	26	1.99
42065568--42065743	46	3.8	46	75	11	171	22	21	28	27	1.99
42065565--42065736	93	1.8	93	89	0	272	22	22	28	26	1.99
42072347--42072385	16	2.5	15	84	8	60	0	30	0	69	0.89
42076100--42076237	69	2.0	69	100	0	276	40	11	7	40	1.69
42076741--42076808	32	2.1	32	91	0	109	42	16	13	27	1.85
42079146--42079185	18	2.2	19	86	4	55	60	0	5	35	1.19
42082098--42082134	15	2.5	15	86	13	58	27	62	0	10	1.28
42082148--42082234	6	14.5	6	95	0	138	28	66	1	3	1.15
42082148--42082265	24	4.9	24	86	1	128	27	62	2	7	1.35
42082158--42082258	30	3.4	30	88	0	130	26	63	1	7	1.33
42083668--42083727	30	2.0	30	90	0	93	55	6	21	16	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42091562--42091739	27	6.6	26	83	6	178	26	15	28	29	1.96
42091563--42091718	82	1.9	81	88	3	233	26	15	28	29	1.96
42091559--42091739	82	2.2	81	83	2	229	26	15	28	29	1.96
42095023--42095070	24	2.0	24	100	0	96	37	8	25	29	1.85
42095023--42095085	24	2.7	24	90	2	83	36	9	20	33	1.85
42098244--42098271	14	2.0	14	100	0	56	21	21	7	50	1.72
42122673--42122697	13	1.9	13	100	0	50	32	16	16	36	1.90
42124308--42125005	47	14.6	47	91	2	1090	32	8	30	29	1.86
42124308--42125005	96	7.3	94	91	2	1090	32	8	30	29	1.86
42124308--42125005	143	4.9	143	95	1	1166	32	8	30	29	1.86
42135240--42135283	23	1.9	23	86	9	63	40	20	6	31	1.79
42138609--42138637	13	2.2	13	100	0	58	55	13	0	31	1.39
42139470--42139494	13	1.9	13	100	0	50	8	36	40	16	1.77
42145112--42145376	40	6.7	40	85	5	270	26	27	20	25	1.99
42145308--42145385	40	1.9	41	82	10	97	26	28	20	24	1.99
42155450--42155527	39	2.0	39	100	0	156	38	10	15	35	1.81
42158688--42158811	57	2.2	56	83	11	146	30	24	16	29	1.96
42159041--42159081	7	5.9	7	100	0	82	26	14	0	58	1.37
42167705--42167741	19	1.9	19	88	0	56	29	16	18	35	1.93
42169635--42169687	21	2.5	21	82	11	56	20	43	1	33	1.63
42169647--42169694	22	2.2	20	79	13	51	18	45	2	33	1.61
42170575--42170630	29	1.9	29	82	7	69	51	12	7	28	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42170941--42170969	15	2.0	15	93	6	51	20	34	3	41	1.69
42181485--42181524	20	2.0	20	95	0	71	35	5	22	37	1.76
42192055--42192379	48	6.8	48	87	1	454	27	28	18	25	1.98
42196182--42196445	54	4.9	54	84	3	327	28	14	19	37	1.91
42196184--42196445	27	9.7	27	83	7	284	28	14	19	37	1.91
42199668--42199887	40	5.6	40	80	7	202	24	20	27	27	1.99
42202212--42202264	20	2.8	19	75	13	56	30	5	1	62	1.29
42204575--42204736	41	3.9	40	73	18	152	28	29	22	19	1.98
42213010--42213176	41	4.0	41	72	13	135	27	31	20	20	1.98
42216113--42216188	29	2.6	29	97	0	143	17	23	27	31	1.97
42216172--42216250	31	2.6	31	89	2	124	26	24	17	31	1.97
42216274--42216365	42	2.2	42	90	0	139	33	21	15	29	1.94
42217345--42217437	27	3.4	27	86	2	116	20	24	19	35	1.96
42217490--42217705	27	7.9	27	79	4	130	32	9	18	39	1.82
42217580--42217705	54	2.3	54	90	2	191	30	8	19	40	1.82
42217582--42217719	54	2.5	53	82	4	168	31	8	21	39	1.83
42217698--42217907	27	7.8	27	87	2	244	39	7	24	29	1.82
42217671--42217830	81	2.0	81	80	2	178	41	8	20	30	1.81
42217913--42218002	27	3.3	27	82	3	110	32	11	16	40	1.84
42219747--42219783	15	2.5	15	90	0	65	24	5	40	29	1.77
42225208--42225243	16	2.2	16	95	0	63	19	13	25	41	1.88
42226713--42226811	45	2.2	45	82	8	114	18	15	33	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42232652--42233079	23	18.7	22	75	9	319	37	23	7	31	1.82
42232652--42233124	46	10.3	46	76	7	428	37	24	6	31	1.82
42232790--42233125	137	2.4	137	88	5	466	37	23	6	32	1.81
42232654--42233079	229	1.9	229	92	2	721	37	23	7	30	1.82
42235062--42235141	40	2.0	40	92	0	133	28	20	26	25	1.99
42236542--42236581	14	2.9	14	96	0	71	22	0	0	77	0.77
42236524--42236582	29	2.0	29	86	3	82	23	1	1	72	1.02
42236524--42236582	15	4.0	15	82	4	75	23	1	1	72	1.02
42237051--42237089	7	5.6	7	81	0	51	48	25	0	25	1.51
42237051--42237152	14	7.2	14	75	10	64	46	27	1	24	1.64

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356