genome.fa.s11.2.7.7.80.10.50.1000.98.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  98  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30986726--30986750	7	3.6	7	100	0	50	28	0	12	60	1.32
30987113--30987195	43	1.9	43	95	0	148	50	1	21	26	1.56
30987826--30987876	23	2.2	24	80	16	63	37	3	1	56	1.29
30987833--30987878	23	2.0	23	88	12	69	39	4	2	54	1.32
30987831--30987881	22	2.3	21	84	15	68	35	3	1	58	1.28
30993377--30993598	47	4.6	47	77	9	187	27	15	24	32	1.96
30993376--30993569	100	1.9	100	83	4	248	26	15	24	32	1.96
30997234--30997299	34	1.9	34	81	6	80	25	25	22	25	2.00
30998993--30999026	12	2.8	12	86	0	50	23	41	0	35	1.55
31002757--31002865	37	2.9	37	95	0	191	26	31	19	22	1.98
31003011--31003147	50	2.8	49	87	6	215	30	26	7	35	1.84
31003011--31003246	47	4.9	50	80	12	210	28	27	9	33	1.89
31003117--31003310	47	4.1	47	89	0	280	27	29	10	32	1.90
31003210--31003281	22	3.1	22	64	24	58	23	29	13	33	1.93
31003070--31003310	94	2.5	93	85	5	290	27	29	10	32	1.90
31008108--31008272	46	3.6	45	81	4	156	28	18	28	24	1.98
31017279--31017509	47	4.8	47	75	10	191	27	16	24	31	1.96
31017288--31017541	47	5.2	47	77	8	188	24	15	27	32	1.95
31017301--31017480	100	1.8	100	81	2	227	26	17	24	32	1.97
31019870--31019901	15	2.3	15	89	10	50	18	28	28	25	1.98
31020778--31020954	33	5.4	33	88	0	255	40	29	9	19	1.84
31022861--31022953	24	3.8	24	78	7	82	33	16	23	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31030125--31030182	29	2.0	29	96	0	107	32	13	18	34	1.91
31032601--31032694	24	3.8	24	80	9	84	35	17	24	23	1.95
31032587--31032704	26	4.8	24	76	12	89	33	18	23	24	1.97
31035567--31035752	40	4.7	40	89	2	268	26	28	20	24	1.99
31039067--31039176	51	2.1	51	94	1	193	29	22	13	34	1.93
31041024--31041077	28	1.9	28	100	0	108	44	16	11	27	1.82
31041253--31041375	33	3.7	33	84	2	158	39	31	10	18	1.85
31043889--31043927	18	2.2	18	86	9	53	61	0	7	30	1.24
31046037--31046080	19	2.4	19	85	7	56	50	0	9	40	1.34
31062424--31062573	42	3.5	42	81	8	169	35	25	15	24	1.94
31067941--31068005	33	2.0	33	87	0	94	36	27	6	29	1.81
31068796--31068877	41	2.0	41	97	0	155	34	20	12	32	1.90
31070131--31070215	42	2.0	44	86	9	122	37	23	16	22	1.93
31070542--31070581	14	2.5	17	80	15	50	35	25	2	37	1.69
31072256--31072300	22	2.0	22	87	8	65	44	4	0	51	1.21
31072657--31072696	20	2.0	20	85	0	53	20	7	2	70	1.24
31084259--31084293	3	11.7	3	93	0	61	68	0	31	0	0.90
31086467--31086499	16	2.1	16	88	11	50	42	9	0	48	1.35
31097145--31097322	52	3.5	51	82	7	204	28	14	28	28	1.95
31097145--31097322	51	3.5	49	82	6	187	28	14	28	28	1.95
31102797--31102842	16	3.1	14	82	14	56	69	6	0	23	1.11
31102787--31102851	26	2.5	26	82	9	80	70	6	0	23	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31128152--31128441	47	6.1	47	91	3	445	31	9	30	27	1.89
31128155--31128430	145	1.9	145	93	0	471	30	10	31	27	1.90
31128560--31128638	37	2.1	37	85	0	104	25	17	30	26	1.97
31131925--31131972	25	1.9	25	87	8	71	54	14	10	20	1.70
31134298--31134340	19	2.2	19	91	4	68	44	20	18	16	1.87
31140348--31140409	25	2.5	25	86	5	90	32	20	19	27	1.97
31145130--31145175	3	15.3	3	100	0	92	32	32	0	34	1.58
31147478--31147591	27	4.2	26	82	4	84	40	17	9	32	1.82
31147577--31147638	27	2.3	27	88	0	88	35	29	6	29	1.82
31147588--31147781	27	6.8	27	77	13	129	28	25	7	38	1.83
31147588--31147781	54	3.4	54	73	13	163	28	25	7	38	1.83
31147649--31147783	27	5.0	27	86	0	146	29	20	8	40	1.83
31147647--31147782	54	2.5	53	81	1	164	28	22	8	40	1.84
31147760--31148063	27	11.2	27	76	10	183	39	20	9	31	1.84
31147774--31148045	54	5.0	53	78	7	217	40	18	9	31	1.83
31147760--31147954	81	2.4	81	87	2	268	39	21	8	30	1.83
31147760--31148007	81	3.0	81	82	8	265	40	20	8	30	1.83
31148083--31148160	27	2.9	27	75	11	79	35	20	20	23	1.96
31149480--31149673	25	8.0	24	89	5	252	28	20	22	28	1.99
31152100--31152254	42	3.7	42	86	1	202	29	23	14	32	1.95
31152494--31152572	39	2.0	39	97	0	149	27	21	15	35	1.93
31162665--31162778	43	2.6	42	74	15	124	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31178116--31178153	20	1.9	20	89	10	60	47	15	2	34	1.60
31178729--31178825	40	2.4	41	84	6	119	26	27	16	28	1.97
31179042--31179079	18	2.1	18	100	0	76	34	39	0	26	1.57
31192054--31192136	31	2.7	31	94	3	143	27	25	16	30	1.97
31192355--31192424	25	2.8	25	88	0	86	25	22	22	28	1.99
31193341--31193536	81	2.4	81	81	5	218	31	11	17	39	1.86
31193343--31193503	27	6.0	27	77	8	148	32	9	18	40	1.82
31193404--31193536	27	5.0	26	72	8	97	30	12	19	38	1.88
31193535--31193599	27	2.4	27	81	0	76	38	9	23	29	1.85
31195776--31195843	31	2.2	31	86	2	102	32	25	11	30	1.91
31195786--31195858	31	2.4	31	83	2	94	30	23	13	32	1.93
31196069--31196147	25	3.2	24	82	10	88	24	20	22	32	1.97
31196956--31197020	27	2.4	27	79	5	69	21	23	18	36	1.95
31197074--31197159	27	3.1	27	76	17	86	36	9	15	39	1.79
31197136--31197260	27	4.7	26	77	8	117	28	6	21	43	1.77
31197138--31197293	81	1.9	81	83	5	199	28	9	19	41	1.83
31197164--31197279	27	4.3	27	78	4	99	27	9	22	40	1.85
31197292--31197356	27	2.4	27	84	0	76	38	7	24	29	1.83
31216908--31216985	33	2.4	32	80	6	84	34	17	20	26	1.95
31219348--31219532	40	4.7	40	80	6	198	25	21	27	25	2.00
31219401--31219565	79	2.1	79	80	6	183	27	20	26	25	1.99
31227305--31227489	79	2.3	81	83	7	227	24	22	27	24	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31227306--31227489	40	4.6	40	82	9	207	25	22	27	24	2.00
31227358--31227522	79	2.1	79	83	6	201	26	21	27	24	1.99
31234904--31235088	40	4.6	39	81	5	194	25	22	27	25	2.00
31234957--31235121	79	2.1	79	82	6	192	27	21	26	24	1.99
31242152--31242335	79	2.3	81	81	7	216	25	21	27	25	1.99
31242151--31242335	40	4.7	40	80	6	207	24	21	27	25	1.99
31242152--31242368	79	2.7	78	78	11	192	26	21	27	25	1.99
31246597--31246688	44	2.1	45	93	2	159	21	19	28	30	1.98
31252301--31252337	18	2.1	18	89	0	56	29	2	16	51	1.58
31254519--31254633	44	2.6	43	83	6	133	19	18	29	33	1.95
31257327--31257391	31	2.1	31	100	0	130	21	10	12	55	1.67
31257530--31257589	29	2.1	29	93	0	102	13	18	15	53	1.73
31259381--31259421	20	2.0	20	95	0	73	31	9	21	36	1.86
31266267--31266295	15	1.9	15	100	0	58	34	13	13	37	1.85
31268382--31268474	26	3.5	26	88	1	123	47	8	12	31	1.72
31270658--31270714	30	1.9	29	82	10	71	38	1	12	47	1.51
31274055--31274478	27	15.7	27	79	4	264	37	20	8	33	1.82
31274190--31274423	81	2.9	81	88	0	335	41	21	7	28	1.81
31274177--31274453	81	3.4	81	83	4	326	40	21	7	29	1.82
31274177--31274480	27	11.3	27	77	4	274	40	21	8	29	1.82
31275377--31275473	26	3.8	26	87	1	126	26	24	20	27	1.99
31275377--31275473	51	1.9	51	87	4	142	26	24	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31275618--31275709	42	2.2	42	88	0	130	29	14	20	35	1.92
31275733--31275809	31	2.5	31	86	0	118	32	18	22	27	1.97
31285580--31285604	13	1.9	13	100	0	50	4	24	0	72	1.02
31287590--31287663	34	2.2	34	97	2	141	48	18	5	27	1.70
31298320--31298360	20	2.0	21	90	4	66	75	0	24	0	0.80
31298321--31298367	21	2.2	21	85	7	60	74	2	21	2	1.03
31300288--31300515	46	5.0	46	89	1	296	39	14	23	22	1.90
31309129--31309253	29	4.3	29	79	1	144	28	28	15	28	1.96
31309464--31309499	16	2.2	16	95	0	63	13	25	13	47	1.80
31310812--31310853	18	2.4	17	84	4	57	14	16	47	21	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356