Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  326  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105272172--105272198
6
4.5
6
100
0
54
70
29
0
0
0.88
105273659--105273701
22
2.0
22
95
0
77
16
30
9
44
1.79
105275174--105275204
5
6.2
5
92
0
53
35
19
3
41
1.67
105275172--105275202
15
2.1
15
100
0
62
32
19
6
41
1.77
105281656--105281826
93
1.8
93
93
0
297
29
29
20
21
1.98
105281651--105281823
46
3.7
46
78
13
201
30
28
20
21
1.98
105282243--105282302
30
2.0
30
86
0
84
30
25
6
38
1.81
105290524--105290732
40
5.2
40
93
2
341
23
19
28
28
1.98
105290712--105290752
20
2.0
20
100
0
82
14
14
36
34
1.87
105290672--105290793
60
2.0
60
100
0
244
19
18
31
30
1.96
105290732--105290844
40
2.8
40
88
4
158
24
19
27
28
1.99
105290632--105290831
100
2.0
100
94
0
346
22
18
30
30
1.97
105292665--105292835
93
1.8
93
96
0
315
28
29
21
21
1.98
105292660--105292832
46
3.7
46
80
13
219
28
28
21
21
1.98
105293253--105293311
30
2.0
29
86
3
82
30
25
6
37
1.82
105295657--105295685
14
2.0
15
93
6
51
65
6
6
20
1.40
105297997--105298025
14
2.0
15
93
6
51
62
6
17
13
1.52
105299020--105299065
20
2.3
20
89
10
69
52
0
0
47
1.00
105299036--105299089
9
5.6
10
76
12
51
62
1
0
35
1.06
105299020--105299081
20
3.2
20
78
15
67
56
1
0
41
1.09
105299085--105299127
19
2.2
20
88
12
63
41
2
0
55
1.12
105299083--105299129
20
2.3
21
82
17
64
42
2
0
55
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105299098--105299137
19
2.1
19
86
9
55
42
0
0
57
0.98
105301929--105301967
12
3.2
12
92
0
60
87
2
7
2
0.73
105305105--105305147
21
2.1
20
82
4
50
27
4
4
62
1.35
105305346--105305414
34
2.0
34
97
0
129
30
18
0
50
1.47
105306132--105306183
19
2.7
19
85
8
70
67
0
1
30
1.02
105306238--105306320
38
2.1
39
82
4
105
57
1
8
32
1.36
105306266--105306326
28
2.1
29
82
8
72
59
1
8
31
1.37
105307036--105307070
18
1.9
18
88
0
52
62
5
0
31
1.18
105321596--105321633
19
2.0
19
94
0
67
47
21
18
13
1.82
105328507--105328624
58
2.0
58
98
0
227
38
16
18
27
1.92
105345848--105345876
14
2.0
15
93
6
51
75
0
6
17
1.01
105345848--105345902
17
3.4
15
81
18
58
72
5
7
14
1.24
105347699--105348237
214
2.5
213
89
2
805
32
20
15
31
1.94
105357219--105357250
13
2.5
13
94
0
55
15
6
3
75
1.14
105359852--105359915
31
2.1
31
100
0
128
56
3
20
20
1.56
105361872--105361902
14
2.2
14
100
0
62
41
0
6
51
1.27
105362591--105362624
15
2.3
15
89
0
50
17
14
8
58
1.61
105369379--105369570
104
1.8
105
86
6
280
23
18
11
46
1.82
105370020--105370693
44
15.3
45
76
5
633
28
16
26
29
1.97
105370021--105370564
132
4.1
132
95
0
935
27
16
26
29
1.97
105370143--105370693
220
2.5
219
85
4
700
28
16
25
29
1.97
105370021--105370693
132
5.1
132
91
1
904
28
16
26
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105372498--105372526
12
2.4
12
100
0
58
41
0
6
51
1.28
105373208--105373241
15
2.3
15
89
0
50
17
14
8
58
1.61
105377726--105377787
5
12.4
5
100
0
124
40
0
0
59
0.97
105381054--105381137
26
3.2
26
96
0
150
34
5
22
36
1.79
105383874--105383912
19
2.1
19
85
9
53
58
2
5
33
1.33
105384227--105384451
3
73.3
3
64
24
55
60
3
3
33
1.30
105384277--105384395
11
11.1
11
69
25
62
60
2
2
34
1.24
105384349--105384477
27
4.5
27
69
25
70
61
1
3
34
1.21
105384235--105384467
10
23.6
10
65
24
95
59
3
3
34
1.28
105384277--105384516
80
3.0
79
72
16
199
61
2
2
33
1.24
105384411--105384516
12
8.4
12
68
25
51
64
0
1
33
1.11
105384598--105384642
22
2.0
22
95
0
81
35
13
31
20
1.91
105395384--105395439
13
4.5
13
78
13
73
48
12
0
39
1.41
105395397--105395448
23
2.3
23
93
0
86
50
11
0
38
1.39
105396169--105396238
32
2.4
28
83
11
86
37
0
2
60
1.12
105396193--105396241
22
2.3
21
80
10
55
32
0
2
65
1.04
105396169--105396238
28
2.3
31
81
15
85
37
0
2
60
1.12
105396197--105396240
22
2.0
23
86
4
63
31
0
2
65
1.05
105396189--105396240
14
3.9
14
72
7
54
32
0
1
65
1.04
105396410--105396764
86
4.1
85
82
6
412
32
11
10
45
1.74
105399953--105400001
20
2.5
20
82
0
53
30
8
6
55
1.54
105400447--105400484
20
1.9
20
89
10
60
36
0
0
63
0.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105403383--105403474
46
2.1
43
85
6
121
27
9
1
61
1.34
105403444--105403682
3
80.0
3
66
16
61
28
7
3
61
1.39
105403552--105403584
14
2.3
15
85
15
52
21
3
0
75
0.93
105403524--105403620
49
1.9
50
81
8
117
26
7
2
63
1.31
105417308--105417358
10
5.0
10
85
4
75
68
1
9
19
1.27
105417306--105417358
21
2.6
21
87
3
81
67
1
9
20
1.28
105422072--105422343
133
2.0
133
100
0
544
32
10
15
41
1.81
105424804--105426007
213
5.7
213
83
4
1374
29
15
19
35
1.93
105424804--105426007
426
2.8
425
83
2
1522
29
15
19
35
1.93
105424804--105426007
639
1.9
638
84
5
1608
29
15
19
35
1.93
105427154--105427238
42
2.0
42
97
0
161
25
22
14
37
1.92
105429748--105429990
3
82.0
3
67
16
64
61
3
6
28
1.38
105429846--105429879
14
2.4
14
85
14
52
76
0
2
20
0.92
105429810--105429909
52
1.9
51
82
6
121
64
2
7
27
1.30
105430026--105430070
21
2.1
21
87
0
63
64
0
6
28
1.19
105432980--105433017
20
1.9
20
89
10
60
63
0
0
36
0.95
105433463--105433511
20
2.5
20
82
0
53
55
6
8
30
1.54
105436699--105437038
86
4.0
86
82
6
404
45
10
10
33
1.72
105436699--105437038
172
2.0
172
84
4
445
45
10
10
33
1.72
105437221--105437263
22
2.0
22
90
0
68
65
2
0
32
1.06
105437221--105437268
14
3.5
14
74
2
53
64
2
0
33
1.05
105437223--105437291
28
2.3
31
87
7
99
59
2
0
37
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105438011--105438062
23
2.3
23
93
0
86
38
0
11
50
1.39
105438020--105438075
13
4.5
13
80
13
73
39
0
12
48
1.41
105454901--105454956
19
3.1
18
72
23
55
39
1
3
55
1.28
105455069--105455121
21
2.5
21
87
0
70
32
35
7
24
1.84
105458271--105458367
24
4.3
23
68
17
69
58
5
6
29
1.44
105458669--105458698
14
2.1
14
93
0
51
83
13
0
3
0.77
105462983--105463021
20
2.0
20
94
0
69
46
5
20
28
1.72
105482386--105482533
7
21.9
7
66
21
66
56
0
4
38
1.23
105483544--105483602
30
2.0
30
83
12
77
13
11
35
38
1.82
105488158--105488267
26
4.2
26
95
0
184
33
5
24
36
1.79
105491154--105491229
35
2.2
35
83
9
93
52
5
1
40
1.32
105495085--105495143
22
2.7
22
78
5
57
66
1
5
27
1.22
105495045--105495257
3
71.7
3
66
18
72
60
3
7
28
1.41
105495870--105495925
20
3.1
18
77
10
53
75
3
16
5
1.13
105497174--105497239
16
4.0
15
82
13
69
63
1
3
31
1.19
105497174--105497239
8
8.0
8
78
10
62
63
1
3
31
1.19
105497363--105497427
25
2.8
24
83
6
80
52
6
7
33
1.55
105497451--105497507
25
2.3
25
84
0
69
59
1
3
35
1.25
105498118--105498200
30
2.8
30
94
0
139
16
3
51
27
1.61
105498532--105498585
28
1.9
28
81
7
65
20
22
31
25
1.98
105501001--105501050
22
2.3
21
82
3
64
22
0
32
46
1.52
105504437--105504652
23
9.4
23
81
7
210
31
5
23
39
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
105504544--105504603
22
2.7
22
80
10
68
31
1
21
45
1.62
105505586--105506454
23
37.9
23
76
9
614
31
6
24
37
1.82
105505728--105506218
183
2.7
183
92
0
786
31
6
24
37
1.81
105505659--105506452
229
3.5
228
86
3
972
31
6
23
37
1.81
105516802--105516844
13
3.1
14
84
12
54
60
0
0
39
0.97
105519759--105520007
85
2.9
85
85
4
349
24
18
31
26
1.97
105519767--105520002
128
1.8
128
89
0
373
23
17
31
27
1.97
105519759--105520007
43
5.8
43
87
0
356
24
18
31
26
1.97
105534147--105534205
16
3.7
15
80
13
57
45
11
15
27
1.81
105534258--105534311
18
3.1
16
79
12
54
44
7
3
44
1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356