Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  166  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53744095--53744180
20
4.3
20
69
15
70
45
1
3
50
1.26
53744068--53744199
60
2.3
57
85
8
162
46
2
2
48
1.27
53744101--53744215
60
1.9
60
96
0
212
46
1
3
48
1.29
53744575--53744616
22
1.9
22
85
0
57
35
38
2
23
1.68
53745967--53746023
9
6.7
9
76
11
66
28
0
10
61
1.29
53745966--53746014
16
3.0
16
90
3
80
30
0
10
59
1.31
53749083--53749365
103
2.8
100
88
5
437
34
6
3
55
1.42
53749637--53749735
9
10.8
9
69
14
51
46
15
3
35
1.61
53749665--53749757
47
2.0
47
95
0
168
45
15
3
36
1.62
53749631--53749735
18
5.7
18
69
12
61
45
16
2
35
1.62
53749685--53749760
25
3.2
25
66
17
70
47
14
2
35
1.58
53754826--53754854
13
2.1
14
93
6
51
34
0
6
58
1.25
53754849--53754873
11
2.3
11
100
0
50
20
16
16
48
1.82
53755271--53755325
21
2.6
21
88
0
92
27
20
50
1
1.58
53755560--53755640
31
2.5
32
82
11
103
12
7
20
59
1.57
53755580--53755645
31
2.1
31
91
0
105
16
10
21
51
1.74
53756777--53756802
13
2.0
13
100
0
52
30
0
0
69
0.89
53756766--53756838
21
3.5
21
70
9
69
34
0
0
65
0.93
53758839--53758911
29
2.5
29
80
6
85
36
13
6
42
1.71
53758943--53759213
65
4.2
65
88
1
400
47
23
0
27
1.57
53761465--53761494
13
2.2
14
94
5
53
50
16
0
33
1.46
53764312--53764349
18
2.1
19
85
5
51
52
7
2
36
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53765811--53765860
17
2.7
20
78
18
70
10
0
44
46
1.37
53770450--53770499
17
2.7
20
78
18
70
10
0
44
46
1.37
53773571--53773626
22
2.6
22
83
5
62
51
0
0
48
1.00
53776428--53776523
27
3.7
26
74
9
88
34
3
4
58
1.33
53776557--53776634
39
2.0
39
100
0
156
25
10
5
58
1.51
53783474--53783515
20
2.0
22
86
9
61
45
0
0
54
0.99
53784112--53784149
14
2.8
13
92
8
58
31
21
7
39
1.82
53787585--53787642
30
1.9
30
85
0
80
17
29
29
24
1.97
53789494--53789525
6
5.3
6
92
0
55
81
0
3
15
0.82
53791317--53791366
23
2.2
24
82
10
68
66
0
34
0
0.92
53791330--53791387
15
3.6
16
76
17
57
72
1
25
0
0.94
53791334--53791382
19
2.6
19
83
6
64
73
2
24
0
0.94
53798550--53798594
8
5.5
8
80
15
56
84
0
4
11
0.76
53798550--53798593
12
3.7
12
80
19
56
84
0
4
11
0.77
53799108--53799171
22
3.1
21
77
6
60
78
4
6
10
1.08
53810660--53810771
27
4.1
27
80
7
111
38
22
23
16
1.93
53816919--53818022
178
6.2
178
89
2
1436
28
19
26
25
1.99
53816919--53818022
355
3.1
356
87
2
1490
28
19
26
25
1.99
53817192--53817997
44
18.2
43
69
11
317
28
19
25
26
1.99
53829714--53829797
44
1.9
43
92
2
141
35
30
15
17
1.91
53830027--53830063
14
2.4
16
86
8
51
32
21
2
43
1.67
53830509--53830559
20
2.7
18
82
14
59
37
21
0
41
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53838613--53838651
6
6.5
6
100
0
78
82
0
17
0
0.68
53843024--53843057
15
2.2
16
89
5
52
76
0
11
11
1.02
53843484--53843535
4
12.0
4
77
22
52
67
1
5
25
1.23
53846970--53847097
64
2.0
64
96
0
238
25
21
28
25
1.99
53848951--53849039
5
16.2
5
78
17
72
17
6
1
74
1.10
53848951--53849039
11
8.0
11
75
15
85
17
6
1
74
1.10
53848951--53849039
17
5.4
17
76
10
78
17
6
1
74
1.10
53848963--53849039
6
13.3
6
78
8
61
16
7
1
74
1.12
53851952--53851976
13
1.9
13
100
0
50
44
0
8
48
1.32
53859263--53859637
47
8.0
47
91
0
581
33
12
28
25
1.92
53859611--53859747
46
3.0
46
93
0
220
34
10
32
23
1.88
53861913--53861940
13
2.2
13
100
0
56
42
7
7
42
1.59
53870777--53870946
45
3.7
47
77
17
169
27
29
21
21
1.99
53870777--53870946
93
1.8
93
94
1
306
27
29
21
21
1.99
53871364--53871423
30
2.0
30
90
0
93
30
25
8
36
1.85
53878311--53878480
46
3.8
45
81
6
209
30
28
21
20
1.98
53903233--53903315
39
2.1
39
100
0
166
45
7
19
27
1.76
53917213--53917280
34
2.0
34
97
0
127
47
22
2
27
1.66
53926266--53926342
27
2.9
27
80
3
75
35
24
12
27
1.92
53926293--53926344
27
1.9
27
92
0
86
32
28
13
25
1.93
53929872--53930005
48
2.8
46
87
4
178
26
22
25
26
2.00
53931971--53932068
43
2.3
43
84
8
128
45
15
15
23
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53937139--53937223
37
2.3
37
87
0
116
30
20
23
25
1.98
53937266--53937312
23
2.0
23
87
0
67
29
17
25
27
1.97
53937289--53937455
48
3.5
48
84
1
217
28
19
23
29
1.98
53939200--53939255
29
1.9
29
96
0
103
35
1
19
42
1.62
53944346--53944518
46
3.7
46
77
13
201
21
20
27
29
1.98
53944343--53944513
93
1.8
93
93
0
297
21
21
28
28
1.98
53947981--53948086
29
3.7
27
80
13
90
25
33
16
24
1.95
53948009--53948098
29
3.1
28
85
7
110
28
31
14
25
1.95
53949002--53949051
25
2.0
25
92
0
82
36
8
22
34
1.83
53951340--53951418
29
2.7
29
86
5
106
27
32
15
24
1.95
53955821--53955910
29
3.1
29
88
1
119
31
27
14
26
1.95
53956806--53956878
38
1.9
38
100
0
146
32
12
24
30
1.92
53958065--53958209
40
3.6
40
85
4
193
25
24
26
23
2.00
53960640--53960671
16
2.0
16
93
0
55
9
0
34
56
1.32
53973230--53973351
22
5.3
22
62
21
61
25
29
12
32
1.92
53973202--53973847
47
13.6
47
93
2
924
28
29
9
33
1.88
53973202--53973847
96
6.8
94
92
2
924
28
29
9
33
1.88
53975300--53975419
56
2.1
56
98
0
231
22
23
9
45
1.81
53976485--53976521
17
2.2
17
90
0
56
59
16
16
8
1.59
53978806--53979157
131
2.7
131
76
5
327
26
21
18
33
1.96
53979940--53979981
18
2.3
18
87
0
66
28
38
7
26
1.82
53982430--53982557
55
2.4
55
82
2
161
23
32
24
19
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53983933--53984150
47
4.7
47
76
7
189
25
30
17
25
1.97
53983887--53984150
47
5.7
46
74
10
153
25
30
17
26
1.97
53983887--53984150
94
2.8
92
75
9
277
25
30
17
26
1.97
53985811--53985860
24
2.1
23
82
14
57
70
8
0
22
1.13
53990868--53990912
23
1.9
24
86
4
65
46
0
0
53
1.00
53994777--53994855
36
2.2
37
81
2
97
62
1
7
29
1.31
54006874--54007303
214
2.0
214
99
0
851
35
10
19
34
1.86
54011216--54011256
17
2.4
17
83
0
55
19
19
2
58
1.50
54016777--54016903
39
3.3
39
69
18
111
26
5
5
62
1.40
54016772--54016915
77
1.9
77
94
0
252
26
6
5
61
1.42
54030180--54030212
7
4.6
7
92
7
57
57
0
0
42
0.98
54044678--54044863
40
4.7
40
86
5
225
26
26
21
24
1.99
54049052--54049185
72
1.9
72
87
3
198
35
19
18
26
1.95
54049052--54049227
72
2.4
72
80
11
189
34
18
19
26
1.95
54049610--54049660
21
2.4
21
93
3
84
49
5
9
35
1.60
54055508--54055775
46
5.8
46
74
12
217
20
19
29
30
1.97
54055554--54055722
47
3.6
47
77
13
195
21
19
29
29
1.98
54055504--54055768
93
2.9
93
92
0
433
21
19
29
29
1.97
54060211--54060286
38
2.0
38
97
0
143
31
14
22
31
1.94
54061475--54061579
41
2.6
41
81
1
122
26
25
25
21
2.00
54068232--54068307
38
2.0
38
92
5
127
31
14
22
31
1.94
54073885--54073957
29
2.5
29
84
4
85
24
30
17
27
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54075659--54075725
27
2.5
27
97
0
125
55
13
10
20
1.67
54078265--54078464
93
2.2
93
84
0
256
16
29
27
27
1.97
54085956--54086139
40
4.6
40
78
10
198
25
27
22
25
2.00
54085956--54086140
79
2.3
82
82
7
220
25
27
22
24
2.00
54093256--54093459
40
5.1
40
78
8
211
25
26
22
25
2.00
54099173--54099289
43
2.8
42
82
8
139
27
15
24
32
1.95
54099833--54099874
19
2.2
19
91
0
66
23
11
26
38
1.90
54103023--54103080
26
2.2
26
84
3
71
39
22
5
32
1.76
54103040--54103206
27
6.2
27
81
0
210
29
21
7
41
1.80
54103150--54103290
69
2.0
69
83
0
174
31
18
8
41
1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356