Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  154  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49593916--49593986
19
3.8
19
78
10
92
18
22
14
45
1.85
49593916--49594003
37
2.4
37
92
0
140
18
20
12
48
1.80
49595220--49595308
34
2.6
34
86
10
128
25
23
25
24
2.00
49597028--49597225
27
7.3
27
90
0
279
28
23
8
40
1.83
49597257--49597346
27
3.3
27
92
0
144
40
21
10
28
1.85
49597257--49597372
54
2.2
53
81
6
135
38
21
8
31
1.84
49597460--49597524
27
2.4
27
79
5
69
38
16
23
21
1.93
49598271--49598301
16
1.9
16
93
0
53
32
19
12
35
1.90
49598499--49598590
42
2.2
42
96
0
166
31
14
20
33
1.92
49598614--49598723
31
3.5
31
91
0
184
26
16
26
30
1.97
49601854--49601984
43
3.0
43
82
8
185
29
27
16
25
1.97
49612402--49612579
41
4.4
41
93
1
313
33
25
24
16
1.96
49613631--49613662
15
2.1
15
94
0
55
59
0
9
31
1.29
49613634--49613701
24
2.8
24
76
10
75
57
0
4
38
1.19
49616872--49616911
21
2.0
20
85
5
53
12
7
17
62
1.52
49616738--49616989
133
1.9
133
97
0
477
20
10
18
50
1.76
49619058--49619097
21
1.9
21
94
0
71
30
10
12
47
1.74
49619518--49619557
21
1.9
21
94
0
71
30
10
12
47
1.74
49619977--49620016
21
1.9
21
94
0
71
30
10
12
47
1.74
49618679--49620372
460
3.7
460
97
0
3176
35
11
10
41
1.77
49618679--49620372
919
1.8
920
97
0
3203
35
11
10
41
1.77
49625228--49625260
15
2.3
15
89
5
50
63
0
9
27
1.24
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49626478--49626875
43
9.3
43
74
10
210
22
20
24
33
1.97
49626477--49626876
85
4.7
84
79
4
381
22
20
24
33
1.97
49626521--49626889
127
2.9
128
79
5
370
21
20
24
33
1.97
49635803--49636042
24
10.0
24
89
1
356
28
21
20
29
1.98
49636093--49636149
20
2.8
20
100
0
114
26
21
17
35
1.95
49636195--49636244
25
2.0
25
88
0
73
26
20
24
30
1.98
49644942--49644982
15
2.7
16
88
7
59
17
7
17
58
1.60
49647694--49647922
50
4.6
50
80
4
248
24
18
27
28
1.98
49647698--49647882
101
1.8
101
89
0
289
25
18
27
28
1.98
49654169--49654327
43
3.7
43
77
9
164
27
19
24
28
1.99
49658606--49658658
25
2.0
26
85
7
72
45
3
5
45
1.45
49660264--49660297
13
2.4
14
90
9
52
58
23
5
11
1.55
49662773--49662816
22
2.0
23
90
4
72
20
2
54
22
1.56
49662837--49662935
33
3.0
32
77
13
94
26
19
26
28
1.99
49667448--49667552
34
3.1
34
85
8
110
54
3
7
34
1.47
49667469--49667552
34
2.5
34
90
5
136
51
3
8
36
1.50
49673229--49673280
20
2.6
20
77
14
54
19
3
5
71
1.22
49676051--49676092
14
2.8
15
82
7
50
23
2
2
71
1.10
49677115--49677157
19
2.2
20
80
12
54
27
2
6
62
1.33
49679475--49679513
17
2.4
17
86
4
53
25
25
0
48
1.51
49683368--49683539
93
1.8
93
93
0
299
29
29
19
21
1.98
49683361--49683536
46
3.8
46
79
12
207
30
28
19
21
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49699181--49699264
41
2.0
41
90
4
134
27
22
16
33
1.96
49702686--49702797
57
2.0
57
91
3
181
23
13
23
40
1.90
49709629--49710122
27
18.4
27
76
7
353
40
18
9
31
1.82
49709629--49710122
81
6.2
80
79
8
425
40
18
9
31
1.82
49724573--49724634
30
2.1
30
96
0
115
35
24
16
24
1.95
49726109--49726148
20
2.0
20
85
0
53
25
2
2
70
1.13
49730121--49730178
30
1.9
30
82
0
71
22
39
22
15
1.91
49732228--49732387
42
3.8
42
72
11
119
28
23
18
30
1.98
49734646--49734825
89
2.0
89
86
2
254
27
16
17
38
1.91
49738246--49738355
46
2.4
45
82
11
127
23
28
20
28
1.99
49745526--49745574
23
2.1
23
100
0
98
20
8
12
59
1.58
49745735--49745798
32
2.0
32
100
0
128
25
3
15
56
1.54
49747801--49747832
8
4.0
8
91
0
55
46
25
25
3
1.67
49748079--49748171
28
3.3
28
95
0
159
36
26
7
29
1.84
49748277--49748368
28
3.2
27
83
9
112
20
25
22
31
1.98
49748277--49748393
56
2.1
57
81
10
134
19
24
21
34
1.97
49759596--49759982
40
9.7
40
97
1
679
29
20
28
22
1.98
49759596--49759982
119
3.2
119
92
3
627
29
20
28
22
1.98
49768349--49768731
40
9.7
40
96
2
652
29
20
28
21
1.98
49768349--49768731
79
4.9
79
95
2
648
29
20
28
21
1.98
49768349--49768731
197
1.9
196
94
1
669
29
20
28
21
1.98
49770614--49770897
40
7.1
37
85
7
237
26
21
26
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49770614--49770878
80
3.3
80
88
4
376
25
21
26
25
2.00
49770615--49770911
80
3.7
78
85
6
332
26
21
26
25
1.99
49770667--49770911
120
2.1
118
85
6
325
26
20
26
25
1.99
49772409--49772449
21
2.0
21
86
9
59
17
39
12
31
1.86
49777181--49777348
46
3.6
46
75
16
157
28
31
19
20
1.97
49781668--49781753
44
2.0
44
88
0
127
31
32
18
17
1.94
49789501--49789539
3
13.0
3
88
0
60
64
30
2
2
1.21
49793126--49793362
49
4.8
49
84
3
280
26
18
25
29
1.98
49801747--49801815
30
2.3
31
80
9
81
50
10
1
37
1.45
49804743--49804870
46
2.8
46
93
0
211
20
21
28
28
1.98
49808339--49808404
30
2.2
30
91
0
114
27
48
7
16
1.73
49808842--49809049
23
8.6
25
69
14
78
32
6
4
56
1.45
49808985--49809027
22
2.0
22
90
0
68
25
2
11
60
1.43
49809115--49809170
25
2.3
24
79
14
62
37
16
3
42
1.65
49819452--49819716
40
6.7
40
83
5
268
26
28
20
24
1.99
49819648--49819725
40
1.9
41
82
10
97
26
28
20
24
1.99
49826389--49826653
40
6.7
40
83
5
268
26
27
20
25
1.99
49826356--49826653
80
3.7
80
77
9
236
25
27
20
26
1.99
49826585--49826662
40
1.9
41
82
10
97
26
28
20
24
1.99
49830836--49831013
40
4.5
40
95
2
297
24
23
28
24
2.00
49847339--49847522
40
4.6
40
83
5
196
25
22
25
26
2.00
49847339--49847522
80
2.3
80
84
3
228
25
22
25
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49855313--49855413
50
2.0
50
98
0
193
39
14
9
35
1.80
49856290--49856320
16
1.9
16
93
0
53
54
0
29
16
1.42
49858983--49859172
43
4.5
43
84
4
208
16
24
31
27
1.97
49867211--49867255
15
3.1
14
87
9
56
26
2
6
64
1.30
49867221--49867255
15
2.3
15
95
0
61
28
0
5
65
1.15
49867618--49867763
61
2.4
60
80
7
159
34
7
6
51
1.55
49869014--49869045
15
2.1
15
100
0
64
28
37
6
28
1.81
49872856--49872882
13
2.1
13
100
0
54
29
0
22
48
1.51
49873996--49874162
43
3.9
43
73
12
137
22
16
29
31
1.95
49874991--49875016
13
2.0
13
100
0
52
7
0
30
61
1.24
49882157--49882191
18
2.1
17
89
10
54
37
0
11
51
1.38
49895381--49895407
12
2.2
12
100
0
54
51
7
0
40
1.30
49895854--49895978
28
4.5
28
92
2
189
27
12
26
33
1.93
49895854--49895978
55
2.2
57
90
2
191
27
12
26
33
1.93
49895882--49895992
28
4.0
27
91
3
143
30
11
24
33
1.91
49899190--49899230
20
2.0
20
95
0
73
39
4
14
41
1.67
49903623--49903671
15
3.3
15
81
16
57
83
6
8
2
0.87
49905243--49905371
64
2.0
65
92
1
215
30
17
16
35
1.92
49905616--49906306
85
8.1
85
88
2
933
36
20
22
20
1.96
49905616--49906306
171
4.1
170
89
2
951
36
20
22
20
1.96
49907338--49907396
15
3.3
18
77
20
61
30
6
0
62
1.21
49907359--49907407
8
6.5
8
79
11
59
30
6
0
63
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
49907339--49907439
30
3.3
30
81
13
118
29
7
0
62
1.23
49907356--49907456
44
2.3
43
79
12
109
29
6
0
63
1.20
49907353--49907436
29
2.9
29
84
12
109
30
8
0
60
1.26
49907358--49907439
15
5.5
15
83
11
98
30
7
0
62
1.22
49907401--49907456
17
3.5
16
81
18
64
28
5
0
66
1.14
49907393--49907445
17
2.9
18
81
13
65
28
7
0
64
1.21
49907584--49907645
25
2.5
24
75
17
63
33
9
0
56
1.32
49907656--49907709
23
2.5
22
82
8
58
33
0
5
61
1.19
49909948--49910069
48
2.6
44
77
12
129
29
15
29
25
1.96
49910038--49910158
50
2.6
47
78
11
115
28
17
30
23
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356