genome.fa.s11.2.7.7.80.10.50.1000.116.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  116  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36977458--36977501	23	1.9	23	86	9	63	27	25	15	31	1.96
36977464--36977524	22	2.7	22	80	12	61	29	24	14	31	1.95
36977504--36977560	23	2.4	24	85	8	80	26	22	12	38	1.89
36979064--36979120	22	2.5	23	78	18	57	71	3	17	7	1.22
36984884--36985232	50	6.9	50	77	5	344	30	24	17	27	1.97
36984896--36985227	101	3.3	100	84	3	382	31	23	17	27	1.97
36984873--36985274	151	2.7	150	80	5	400	32	24	16	26	1.96
36985244--36985275	14	2.4	14	90	10	50	43	25	9	21	1.82
36996411--36996453	22	2.0	22	90	0	68	44	2	27	25	1.66
36997128--36997164	18	2.1	18	90	10	58	59	2	5	32	1.34
37003202--37003263	30	2.1	30	93	0	106	53	6	16	24	1.66
37012420--37012612	47	4.0	49	80	9	191	29	27	18	24	1.98
37014803--37014855	24	2.2	24	87	9	74	24	24	16	33	1.96
37015712--37015982	18	14.6	18	72	14	167	38	15	11	34	1.84
37015793--37015994	72	2.8	70	82	5	235	39	14	10	35	1.81
37016162--37016401	45	5.3	45	91	2	374	41	20	19	18	1.91
37018217--37018250	16	2.1	16	94	0	59	58	0	0	41	0.98
37018211--37018253	5	8.8	5	87	7	54	58	0	0	41	0.98
37020794--37020819	13	2.0	13	100	0	52	38	7	30	23	1.83
37023215--37023353	27	5.2	26	85	6	179	36	24	20	17	1.94
37023215--37023353	54	2.6	54	89	2	208	36	24	20	17	1.94
37023461--37023534	26	2.8	26	83	4	76	31	12	22	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37024977--37025084	26	4.2	26	92	0	180	36	23	8	32	1.84
37034304--37034361	19	3.1	19	80	5	64	39	31	15	13	1.86
37034468--37034502	17	2.0	18	88	5	54	42	20	0	37	1.52
37035379--37035438	16	3.7	16	72	16	52	43	8	1	46	1.43
37041524--37041730	42	4.8	42	76	7	180	27	25	18	28	1.98
37041433--37041727	90	3.4	90	84	5	338	26	25	18	30	1.98
37041438--37041774	42	7.6	42	72	10	163	27	24	17	29	1.98
37041698--37041826	48	2.7	48	82	2	143	30	27	17	25	1.97
37056886--37056939	27	2.0	27	82	3	65	29	27	22	20	1.98
37056895--37056957	27	2.3	27	81	5	65	33	23	22	20	1.97
37060560--37060615	27	2.1	27	100	0	112	41	21	10	26	1.86
37061249--37061386	40	3.5	40	88	3	190	25	27	23	23	2.00
37069159--37069242	40	2.1	40	86	4	116	25	29	23	21	1.99
37072215--37072283	34	2.0	34	94	0	120	28	24	8	37	1.85
37085441--37085531	29	3.2	29	78	4	87	28	31	9	29	1.89
37088956--37089043	44	2.0	44	100	0	176	36	13	15	34	1.87
37090650--37090674	13	1.9	13	100	0	50	24	28	48	0	1.52
37101760--37101931	79	2.2	79	82	3	211	25	20	27	26	1.99
37101760--37101929	40	4.3	39	85	5	198	25	21	27	25	1.99
37129405--37129505	51	2.0	50	81	7	116	34	28	12	23	1.92
37130549--37130650	41	2.5	41	85	1	143	26	20	20	32	1.97
37130547--37130645	21	4.8	20	66	3	54	25	20	21	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37132529--37132627	38	2.6	38	80	0	117	47	9	4	39	1.54
37134719--37134744	7	3.7	7	100	0	52	61	11	0	26	1.30
37134713--37134752	14	2.9	14	82	17	57	65	7	0	27	1.20
37135485--37135568	34	2.5	34	78	3	98	44	11	13	30	1.79
37138830--37138942	6	18.3	6	67	18	63	46	15	18	18	1.84
37138844--37138942	25	3.7	25	78	15	99	46	16	19	18	1.84
37138872--37138942	31	2.3	31	92	0	124	47	16	16	18	1.82
37139344--37139674	27	12.3	27	87	1	457	25	21	19	32	1.97
37139656--37139784	27	4.8	27	81	0	132	30	7	21	40	1.81
37139685--37140218	27	19.7	27	79	3	185	35	8	21	34	1.83
37139749--37140082	81	4.1	81	84	3	339	39	8	21	30	1.83
37139792--37140084	54	5.4	54	94	0	496	41	8	22	28	1.82
37140094--37140243	54	2.8	54	80	4	160	30	8	20	41	1.82
37140090--37140243	81	1.9	82	82	4	195	30	8	20	40	1.82
37140094--37140243	27	5.6	27	79	9	144	30	8	20	41	1.82
37142221--37142333	6	18.3	6	66	18	54	47	15	17	19	1.82
37142235--37142303	25	2.8	25	81	0	84	47	14	17	20	1.82
37142263--37142333	31	2.3	31	92	0	115	49	14	15	21	1.79
37142735--37143092	27	13.3	27	87	1	484	24	21	19	34	1.96
37143074--37143146	27	2.7	27	78	0	74	32	9	20	36	1.85
37142735--37143146	81	5.1	81	83	2	278	25	19	19	34	1.96
37143105--37143202	27	3.7	26	79	5	97	29	7	17	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37143210--37143502	27	10.8	27	84	0	397	40	8	22	27	1.83
37143210--37143502	54	5.4	54	95	0	505	40	8	22	27	1.83
37143512--37143661	27	5.6	27	78	6	151	30	8	19	42	1.81
37148055--37148236	41	4.5	41	84	1	249	33	15	28	22	1.95
37148055--37148236	81	2.2	82	91	0	285	33	15	28	22	1.95
37166946--37167025	34	2.4	34	82	0	88	35	25	7	32	1.84
37168842--37168882	21	2.0	21	85	9	57	41	7	24	26	1.81
37171595--37171771	88	2.0	88	100	0	354	51	14	14	19	1.76
37177715--37177747	16	2.1	16	88	11	50	39	3	18	39	1.66
37178376--37178554	85	2.1	85	96	0	331	38	8	26	26	1.85
37179823--37180368	47	11.5	47	91	3	776	33	8	29	28	1.87
37179823--37180368	96	5.7	94	89	3	776	33	8	29	28	1.87
37179823--37180368	143	3.8	141	87	4	740	33	8	29	28	1.87
37180219--37180340	22	5.3	22	62	21	61	33	11	29	25	1.91
37182797--37182871	38	2.0	38	86	5	107	30	18	26	24	1.98
37182925--37183524	40	15.1	40	94	1	999	24	21	28	25	1.99
37184780--37184958	85	2.1	85	96	0	331	38	8	26	26	1.85
37186222--37186818	47	12.6	47	94	2	887	32	9	29	28	1.88
37186222--37186818	96	6.3	94	92	2	887	32	9	29	28	1.88
37186669--37186790	22	5.3	22	62	21	61	33	11	29	25	1.91
37189925--37190200	48	5.8	48	78	9	296	26	19	25	28	1.99
37192470--37192496	12	2.2	12	100	0	54	29	14	29	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37192575--37192651	23	3.4	23	85	7	95	31	16	24	27	1.97
37194762--37194861	50	2.0	50	100	0	200	32	14	10	44	1.78
37202941--37203141	39	5.2	39	93	1	341	28	29	22	18	1.98
37221246--37221327	42	2.0	42	90	0	128	30	23	15	30	1.96
37224032--37224069	19	2.1	17	90	9	58	42	0	0	57	0.98
37227161--37227222	17	3.8	16	80	6	61	40	8	20	30	1.82
37232030--37232090	30	2.0	30	87	0	86	37	9	24	27	1.87
37238583--37238755	46	3.8	44	80	11	188	21	19	30	29	1.97
37238577--37238747	93	1.8	93	91	2	281	21	19	29	29	1.98
37242085--37242128	22	2.0	22	100	0	88	31	27	9	31	1.88
37243080--37243146	34	2.0	34	90	0	107	43	22	4	29	1.73
37250041--37250127	24	3.5	24	78	7	77	36	12	21	28	1.90
37255101--37255237	47	3.0	47	87	8	201	29	27	19	24	1.99
37255652--37255712	30	2.0	30	87	6	88	29	26	8	36	1.85
37257147--37257406	45	5.9	45	76	7	248	23	16	27	32	1.96
37262692--37262953	39	6.7	40	86	7	319	25	21	27	25	1.99
37269423--37269684	39	6.7	40	87	7	328	25	22	27	24	2.00
37277410--37277537	24	5.2	25	80	11	113	31	17	21	28	1.97
37278406--37278462	28	2.0	28	93	0	96	31	10	14	43	1.79
37281308--37281336	15	1.9	15	100	0	58	20	10	34	34	1.87
37281633--37281693	31	2.0	31	86	0	86	45	8	19	26	1.78
37282088--37282120	17	1.9	17	93	0	57	66	3	3	27	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37282753--37282806	23	2.3	23	81	6	65	42	1	9	46	1.46
37284557--37284588	5	6.6	5	92	7	57	81	0	0	18	0.70
37284558--37284588	9	3.3	9	95	4	53	80	0	0	19	0.71
37289008--37289039	5	6.6	5	92	7	57	81	0	0	18	0.70
37289009--37289039	9	3.3	9	95	4	53	80	0	0	19	0.71
37294575--37294675	52	1.9	52	83	0	130	33	26	15	23	1.95
37298954--37299041	46	1.9	46	95	0	158	40	15	5	37	1.72
37309021--37309059	20	2.0	20	85	10	53	23	12	12	51	1.74
37309038--37309096	27	2.3	27	82	5	77	15	15	13	55	1.69
37309863--37309897	8	4.2	8	88	3	52	60	0	40	0	0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356