Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  334  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107440801--107440870
35
2.0
35
83
8
88
57
4
10
28
1.50
107440908--107441036
57
2.2
58
79
5
136
59
3
6
31
1.37
107440989--107441036
13
3.6
13
83
13
62
64
2
6
27
1.28
107441036--107441073
19
2.0
19
89
0
58
55
5
15
23
1.61
107441225--107441282
25
2.5
22
75
21
57
68
5
0
25
1.10
107442005--107442046
14
3.2
13
80
9
50
33
0
2
64
1.07
107443591--107443668
34
2.2
34
84
8
95
35
5
20
38
1.75
107443765--107443858
26
3.4
26
67
16
71
53
3
2
41
1.29
107443763--107443897
58
2.4
55
85
5
171
51
2
1
43
1.25
107447840--107447872
2
17.0
2
87
6
50
48
3
0
48
1.17
107447837--107447879
10
4.7
9
80
13
52
44
2
2
51
1.27
107459291--107459470
85
2.1
86
81
7
204
37
20
10
32
1.85
107459569--107459614
21
2.2
20
84
3
65
56
2
0
41
1.11
107459628--107459680
19
2.7
20
79
5
63
58
5
5
30
1.44
107459756--107459810
21
2.7
20
77
5
56
29
3
1
65
1.20
107459958--107459999
9
4.7
9
80
11
50
21
2
0
76
0.90
107459958--107459998
19
2.1
19
90
4
64
19
2
0
78
0.87
107466428--107466485
11
5.2
11
76
12
55
63
1
0
34
1.04
107466421--107466512
34
2.9
32
81
12
93
58
3
0
38
1.14
107476899--107476939
20
2.0
20
86
9
57
41
29
12
17
1.85
107476990--107477072
27
3.1
26
87
5
103
36
21
21
20
1.96
107477299--107477437
27
5.1
27
89
0
188
25
20
18
34
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107477442--107477633
27
7.1
27
84
0
222
44
8
19
27
1.80
107477447--107477633
81
2.3
81
85
1
259
44
8
19
27
1.79
107477619--107477833
27
8.0
27
81
4
209
30
6
22
40
1.80
107477637--107477857
27
8.2
27
83
0
181
30
7
22
38
1.82
107477635--107477857
81
2.8
80
80
5
259
30
7
22
38
1.82
107482427--107482474
21
2.3
21
88
0
69
16
33
31
18
1.94
107483273--107483297
10
2.5
10
100
0
50
52
0
8
40
1.31
107484134--107484197
22
2.7
24
76
11
60
23
3
3
70
1.16
107484195--107484227
3
11.0
3
100
0
66
66
0
0
33
0.92
107484615--107484707
49
1.9
48
80
10
109
32
6
4
56
1.44
107484819--107484873
24
2.4
23
80
14
60
34
7
3
54
1.46
107484858--107484888
15
2.1
15
93
0
53
32
3
0
64
1.09
107486087--107486228
70
2.0
70
86
1
194
28
23
16
31
1.96
107493607--107493702
47
2.0
47
95
0
174
35
10
16
37
1.83
107501692--107502021
80
4.1
80
86
3
421
41
21
16
20
1.90
107501692--107502021
27
12.3
27
82
5
382
41
21
16
20
1.90
107505339--107505583
27
9.1
27
82
0
247
41
19
17
21
1.91
107505340--107505553
81
2.6
80
84
4
304
41
20
17
20
1.90
107505340--107505580
81
3.0
80
80
6
288
41
19
17
21
1.90
107505340--107505553
54
4.0
54
84
3
279
41
20
17
20
1.90
107508827--107509079
27
9.1
27
84
5
308
39
22
18
20
1.93
107508827--107509078
114
2.3
114
84
4
336
39
21
18
20
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107508973--107509093
27
4.5
26
91
4
170
38
25
17
19
1.93
107514212--107514351
50
2.8
51
84
2
192
25
18
26
29
1.98
107516733--107516866
67
2.0
67
98
1
261
35
17
13
33
1.89
107524654--107524694
21
2.0
21
95
0
73
31
21
26
19
1.97
107530987--107531065
29
2.7
28
80
9
95
31
8
0
59
1.28
107530950--107531048
43
2.3
43
81
6
103
27
7
2
63
1.31
107531179--107531318
3
48.3
3
70
19
70
28
5
1
64
1.25
107531226--107531331
36
2.9
35
80
11
97
25
8
1
64
1.32
107531260--107531318
24
2.4
24
83
13
84
28
5
0
66
1.13
107537155--107537889
44
16.9
44
74
6
496
29
20
23
25
1.99
107537155--107537883
130
5.6
130
89
1
996
29
20
23
26
1.99
107537638--107538012
174
2.1
175
82
3
461
29
19
25
26
1.98
107537768--107538323
44
12.7
43
67
17
209
28
19
26
25
1.99
107537810--107538349
132
4.1
132
92
1
895
27
21
26
24
1.99
107539463--107539540
15
5.4
14
79
15
54
25
8
0
65
1.22
107539452--107539538
44
2.0
44
82
13
108
25
9
0
65
1.22
107539487--107539532
15
2.9
15
93
6
74
26
8
0
65
1.21
107539670--107539800
3
45.3
3
72
17
84
29
4
0
64
1.18
107545379--107545452
35
2.1
35
85
5
96
21
21
22
33
1.97
107547094--107547118
13
1.9
13
100
0
50
36
0
16
48
1.46
107560424--107560475
24
2.2
24
89
0
77
55
9
1
32
1.43
107562375--107562426
24
2.2
24
89
0
77
55
9
1
32
1.43
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107566176--107566298
59
2.1
59
95
1
221
31
17
17
33
1.93
107568223--107568315
46
2.0
46
97
0
177
31
15
13
39
1.86
107574437--107574724
3
93.7
3
68
13
140
58
4
7
29
1.45
107574593--107574724
31
4.1
33
77
14
132
57
1
7
33
1.36
107579519--107579553
17
2.1
17
89
10
54
31
5
17
45
1.71
107580982--107581149
91
1.8
91
89
0
264
33
14
13
38
1.85
107582223--107582265
11
3.4
12
84
15
52
2
16
2
79
0.95
107591498--107591704
43
4.8
43
93
2
353
25
19
31
23
1.98
107591778--107591860
31
2.6
31
80
3
85
61
19
3
15
1.48
107597762--107597951
9
20.6
9
72
11
107
37
1
13
47
1.52
107597762--107597924
71
2.3
69
84
4
202
38
1
12
47
1.50
107597798--107597982
96
2.0
90
86
9
259
38
2
11
47
1.53
107597798--107597982
87
2.1
87
84
7
234
38
2
11
47
1.53
107598056--107598085
15
2.0
15
100
0
60
53
0
0
46
1.00
107598213--107598375
71
2.3
72
95
2
294
60
4
6
28
1.40
107598303--107598855
275
2.0
274
99
0
1097
39
11
13
35
1.81
107599117--107599145
15
1.9
15
100
0
58
48
20
6
24
1.74
107599346--107599897
183
3.0
183
96
0
1023
42
15
15
26
1.86
107602809--107602857
15
3.5
15
71
21
52
32
0
48
18
1.48
107602803--107602860
26
2.2
27
87
6
91
37
0
41
20
1.53
107603138--107603195
28
2.1
28
83
6
73
36
29
1
32
1.68
107603172--107603215
21
2.1
21
91
0
70
34
34
2
29
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107603437--107603463
7
3.9
7
100
0
54
29
55
0
14
1.40
107603569--107603764
41
4.8
41
91
0
320
24
25
17
32
1.97
107608714--107608768
24
2.4
23
81
6
67
54
7
1
36
1.39
107608788--107608846
18
3.1
19
82
9
57
55
6
0
37
1.26
107608804--107608870
23
3.0
21
75
14
55
53
5
1
38
1.34
107608833--107608939
21
4.9
22
73
11
76
52
5
4
37
1.46
107608922--107608963
20
2.0
21
86
4
59
59
9
0
30
1.29
107609287--107609361
3
25.3
3
86
2
80
60
1
6
32
1.31
107609777--107609801
13
1.9
13
100
0
50
32
0
8
60
1.26
107609971--107610004
16
2.1
17
88
5
52
8
0
8
82
0.85
107611614--107611844
40
5.8
40
87
2
295
25
28
22
23
1.99
107619166--107619197
3
10.7
3
100
0
64
68
0
0
31
0.90
107622394--107622429
18
2.0
18
88
0
54
41
25
8
25
1.83
107622503--107622531
7
4.1
7
100
0
58
44
0
0
55
0.99
107622523--107622579
26
2.3
26
79
8
66
33
3
0
63
1.12
107624443--107624501
24
2.4
24
76
18
59
64
0
16
18
1.29
107625287--107625324
20
1.9
20
100
0
76
60
0
21
18
1.36
107626673--107626880
44
4.8
44
74
12
178
18
20
23
37
1.95
107626673--107626879
88
2.4
87
86
3
290
18
20
23
37
1.94
107627016--107627159
45
3.2
45
72
11
134
20
20
22
37
1.94
107627664--107627748
43
2.0
43
85
2
116
20
18
22
38
1.93
107630671--107630718
9
5.1
9
87
9
69
10
2
4
83
0.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
107630671--107630718
10
4.9
10
84
5
55
10
2
4
83
0.87
107631818--107632070
73
3.5
72
91
3
400
30
18
18
32
1.95
107632003--107632252
88
2.8
87
83
7
270
34
19
17
29
1.95
107632385--107632626
72
3.3
72
83
7
299
35
18
14
31
1.91
107632365--107632608
77
3.2
76
84
5
343
31
18
15
34
1.92
107632626--107632802
71
2.5
71
84
3
207
33
22
14
29
1.93
107646568--107646595
3
9.3
3
100
0
56
67
0
0
32
0.91
107646360--107646608
128
2.0
126
81
7
299
57
5
6
31
1.46
107647054--107647102
22
2.3
22
85
3
64
55
0
44
0
0.99
107647206--107647254
10
5.0
9
80
14
53
14
2
4
79
0.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356