genome.fa.s11.2.7.7.80.10.50.1000.147.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  147  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47230833--47230937	40	2.6	40	76	8	115	15	26	19	39	1.91
47230901--47230948	20	2.4	20	86	6	62	10	27	25	37	1.88
47240905--47240989	42	2.0	42	90	4	136	15	25	35	23	1.94
47243661--47243760	30	3.3	30	87	0	137	27	20	27	26	1.99
47246294--47246318	13	1.9	13	100	0	50	36	0	0	64	0.94
47246327--47246377	17	2.8	17	80	13	57	39	1	3	54	1.30
47246494--47246540	25	1.9	25	86	4	69	65	0	2	31	1.04
47246644--47246717	12	6.2	12	70	26	50	56	6	0	36	1.26
47246724--47246800	10	8.0	9	76	15	57	72	1	3	22	1.08
47246737--47246796	17	3.5	16	75	20	59	75	1	5	18	1.07
47246773--47246821	25	2.0	25	84	8	64	73	4	6	16	1.19
47246767--47246825	26	2.3	26	80	11	68	74	3	5	16	1.13
47250066--47250128	18	3.4	18	77	14	65	39	3	12	44	1.59
47251281--47251324	12	3.7	12	79	11	54	36	0	0	63	0.95
47258794--47258854	23	2.8	22	80	11	63	55	1	3	39	1.26
47259963--47259987	11	2.3	11	100	0	50	44	0	16	40	1.47
47260022--47260081	17	3.5	17	74	0	66	30	8	13	48	1.71
47260014--47260081	34	2.0	34	97	0	127	29	7	14	48	1.71
47264705--47265038	50	6.8	48	81	4	319	27	19	29	23	1.98
47264664--47264985	148	2.2	146	83	7	388	29	19	28	22	1.98
47267142--47267306	42	3.9	42	73	7	138	29	15	24	30	1.96
47267570--47267620	25	2.0	25	100	0	102	37	7	11	43	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47274325--47274443	46	2.6	46	87	2	159	28	16	29	25	1.97
47274413--47274637	93	2.4	96	82	8	275	24	18	28	28	1.98
47276575--47276632	4	14.5	4	82	10	66	77	0	20	1	0.86
47276561--47276632	22	3.3	21	77	9	72	72	0	26	1	0.93
47276582--47276634	18	3.0	18	86	13	83	77	0	18	3	0.92
47276575--47276633	22	2.7	23	86	5	86	77	0	20	1	0.85
47280303--47280427	62	2.0	62	95	0	223	36	5	9	48	1.59
47280365--47280456	48	1.9	48	95	0	166	32	5	11	50	1.62
47283813--47283879	31	2.1	32	81	8	75	22	29	29	17	1.97
47292630--47292759	40	3.3	39	85	3	170	23	21	28	26	1.99
47292630--47292794	79	2.1	79	80	2	179	25	21	28	24	1.99
47300480--47300609	40	3.3	39	85	3	170	23	21	28	26	1.99
47300480--47300644	79	2.1	79	80	2	179	25	21	28	24	1.99
47311609--47311766	40	4.0	40	96	0	280	22	19	29	28	1.98
47311624--47311792	80	2.1	80	86	0	230	22	21	28	27	1.99
47313617--47313654	20	2.0	20	89	5	60	31	18	23	26	1.97
47319302--47319387	39	2.2	39	83	4	102	22	19	26	31	1.98
47329586--47329613	3	9.3	3	100	0	56	67	0	0	32	0.91
47331165--47331341	97	1.8	96	82	3	230	26	21	16	35	1.95
47331221--47331969	143	5.3	141	80	4	740	27	20	19	31	1.97
47331221--47331975	286	2.7	285	80	3	833	27	21	19	31	1.97
47339648--47339706	3	19.3	3	96	3	109	66	0	1	32	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47343578--47343839	39	6.7	40	86	7	319	25	22	27	24	2.00
47343630--47343872	78	3.1	79	86	6	264	26	21	27	23	1.99
47351535--47351796	39	6.6	39	85	5	302	25	22	27	24	2.00
47351587--47351829	78	3.1	79	85	6	255	26	21	27	24	1.99
47369189--47369218	14	2.1	15	93	6	53	63	13	10	13	1.52
47375837--47375920	43	2.0	42	90	2	132	34	27	11	26	1.91
47376043--47376109	35	1.9	35	87	0	98	49	8	2	38	1.50
47387728--47387852	46	2.7	46	86	9	157	30	20	26	23	1.98
47388821--47388900	41	2.0	42	85	5	110	23	22	38	15	1.92
47394006--47394207	103	2.0	103	96	0	377	21	9	29	39	1.86
47395929--47395962	3	11.3	3	87	0	50	38	2	0	58	1.13
47398003--47398118	27	4.3	26	81	9	117	19	20	20	38	1.93
47398003--47398118	54	2.1	54	84	3	144	19	20	20	38	1.93
47401631--47401782	76	2.0	76	100	0	304	25	25	19	30	1.98
47407115--47407229	27	4.2	28	82	4	121	20	22	19	37	1.94
47407113--47407237	53	2.3	55	83	5	148	20	24	20	36	1.95
47423441--47423560	48	2.5	48	85	2	154	27	22	15	35	1.94
47434407--47434485	31	2.5	31	87	0	122	25	21	18	34	1.96
47434507--47434600	42	2.2	42	86	0	134	35	20	13	30	1.91
47434733--47434868	26	5.3	26	89	3	199	26	23	22	27	1.99
47434733--47434868	52	2.7	51	94	5	233	26	23	22	27	1.99
47435674--47435735	27	2.3	27	80	5	72	20	22	19	37	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47435767--47436068	27	11.1	27	74	8	200	32	8	18	40	1.82
47435877--47436059	81	2.3	81	86	1	242	30	9	20	39	1.84
47439369--47439480	32	3.5	32	86	0	152	25	25	34	14	1.94
47440218--47440269	20	2.7	20	82	14	56	38	0	23	38	1.55
47440950--47441184	98	2.4	98	80	5	255	28	18	27	24	1.98
47440949--47441181	49	4.8	49	77	5	190	29	18	27	25	1.98
47456040--47456117	34	2.3	34	84	4	104	32	21	19	26	1.97
47456136--47456178	22	1.9	23	95	4	79	23	55	0	20	1.43
47463913--47463976	21	3.0	21	69	24	53	59	4	3	32	1.34
47463946--47464006	30	2.1	27	85	8	77	55	3	6	34	1.42
47465682--47465921	45	5.4	43	78	5	203	27	21	21	29	1.98
47465708--47466008	88	3.4	86	77	7	248	26	23	19	30	1.98
47465716--47465969	133	1.9	134	80	4	298	26	23	19	30	1.98
47465911--47466628	174	4.1	177	83	4	869	26	24	18	30	1.98
47471292--47471337	19	2.4	19	89	7	67	45	13	21	19	1.84
47471949--47471993	22	2.0	22	100	0	90	26	17	37	17	1.93
47478666--47478704	18	2.2	18	86	9	53	61	0	7	30	1.24
47478972--47479008	18	2.1	18	95	5	67	43	0	21	35	1.53
47499609--47499677	34	2.0	34	91	0	111	42	10	18	28	1.83
47503760--47503817	30	1.9	31	85	3	82	29	25	5	39	1.77
47511236--47511295	30	2.0	30	87	6	86	28	25	6	40	1.80
47513869--47513934	25	2.6	25	77	13	64	60	1	3	34	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47514537--47514570	17	1.9	18	88	5	52	38	5	5	50	1.51
47517494--47517532	20	2.0	20	100	0	78	35	12	20	30	1.90
47517583--47517707	49	2.6	49	93	1	207	33	20	19	26	1.96
47517583--47517727	24	6.0	24	91	4	211	31	21	20	26	1.98
47525671--47525720	25	2.0	25	96	0	91	22	26	24	28	1.99
47525764--47525822	20	3.0	20	97	0	109	37	11	20	30	1.89
47525872--47526136	24	11.0	24	91	1	379	29	21	21	28	1.98
47535022--47535236	46	4.6	48	81	9	223	23	30	19	27	1.98
47535157--47535286	47	2.8	47	79	11	158	22	30	20	27	1.98
47535599--47535657	30	2.0	30	89	0	91	27	27	15	30	1.96
47538257--47538308	27	1.9	27	84	0	68	44	17	5	32	1.72
47551726--47551765	21	2.0	20	90	9	64	40	45	5	10	1.60
47551917--47551987	32	2.2	32	83	11	94	35	16	22	25	1.95
47551991--47552071	22	3.7	21	85	3	99	37	25	22	14	1.93
47554001--47554046	24	1.9	24	81	0	56	17	36	4	41	1.69
47555932--47556016	22	4.0	22	72	4	75	34	22	27	16	1.95
47556041--47556123	43	1.9	43	90	0	130	26	31	19	22	1.98
47556421--47556506	27	3.2	27	84	0	109	29	6	25	38	1.82
47572510--47572539	14	2.1	14	93	0	51	23	16	36	23	1.94
47573073--47573107	17	2.1	17	89	5	54	77	14	0	8	0.99
47574293--47575614	661	2.0	661	99	0	2608	38	19	11	30	1.87
47576936--47577070	69	2.0	69	95	0	243	31	5	23	38	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47576939--47577050	34	3.3	33	65	16	84	32	4	25	38	1.76
47577415--47577445	16	1.9	16	93	0	53	38	3	0	58	1.15
47581673--47581753	40	2.0	40	97	0	153	40	1	14	43	1.54
47582579--47582687	37	2.9	37	94	0	182	26	30	19	23	1.98
47582833--47583017	48	3.8	48	90	4	300	31	26	6	35	1.82
47582833--47583016	98	1.9	97	92	4	309	30	26	6	35	1.82
47582987--47583180	47	4.1	47	90	0	289	26	29	10	32	1.90
47582940--47583180	94	2.6	94	84	4	290	27	29	9	33	1.89
47583080--47583151	22	3.1	22	64	24	58	23	29	13	33	1.93
47586920--47586979	31	1.9	31	100	0	120	26	26	18	28	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356