genome.fa.s11.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  95  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29995541--29995650	43	2.6	43	92	0	175	41	16	15	26	1.88
29998701--29998822	43	2.9	43	75	8	115	21	16	32	29	1.95
30013488--30013547	27	2.2	27	85	5	77	41	15	8	35	1.77
30013503--30013601	27	3.7	27	83	5	103	40	18	10	31	1.83
30013503--30013609	54	2.0	54	81	7	128	38	19	10	31	1.85
30013587--30013647	27	2.3	27	79	0	68	32	27	8	31	1.86
30013598--30013809	27	7.9	27	85	4	266	27	23	8	40	1.83
30013733--30013953	27	8.1	27	77	9	101	37	19	9	34	1.83
30013605--30013808	81	2.5	82	86	3	297	28	21	8	41	1.83
30013585--30013889	54	5.6	54	78	0	171	32	22	8	36	1.84
30013544--30013845	81	3.7	81	76	0	237	31	22	8	37	1.85
30013760--30013962	27	7.4	27	78	7	133	36	19	9	33	1.85
30014003--30014080	27	2.9	27	77	11	88	35	21	20	21	1.96
30014067--30014574	253	2.0	253	99	0	998	27	13	24	34	1.93
30015136--30015259	26	4.8	26	85	1	169	28	23	21	26	1.99
30015404--30015495	42	2.2	42	92	0	148	29	14	21	34	1.93
30015519--30015597	31	2.5	31	82	8	106	30	15	25	29	1.96
30022601--30022723	28	4.4	28	90	2	176	27	11	27	33	1.91
30022626--30022737	28	4.0	27	89	3	134	30	10	25	33	1.90
30039004--30039323	159	2.0	159	93	1	552	30	16	20	32	1.95
30054015--30054068	22	2.5	22	96	0	99	29	29	16	24	1.97
30054879--30055054	46	3.8	46	79	12	207	20	20	29	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30054876--30055046	93	1.8	93	93	0	297	20	21	29	28	1.98
30059856--30060060	27	7.6	27	81	5	164	27	27	15	29	1.96
30064919--30064963	23	2.0	23	100	0	90	35	13	28	22	1.92
30068378--30068405	14	2.0	14	100	0	56	42	0	21	35	1.53
30068587--30068735	70	2.1	70	82	4	176	27	17	19	35	1.94
30069511--30069592	31	2.6	31	88	0	128	53	3	4	37	1.40
30070728--30070761	6	5.5	6	86	6	50	14	0	0	85	0.60
30076187--30076217	16	1.9	16	100	0	62	19	3	0	77	0.90
30077988--30078056	31	2.3	31	84	2	86	27	13	17	42	1.86
30081490--30081533	6	7.2	6	92	2	61	61	0	22	15	1.34
30081491--30081533	18	2.3	19	92	4	70	60	0	23	16	1.35
30089193--30089239	17	2.8	16	76	20	51	36	29	19	14	1.92
30089252--30089317	33	2.0	33	100	0	132	39	30	3	27	1.72
30100414--30100468	4	13.2	4	85	14	76	23	1	25	49	1.60
30105428--30105485	21	2.8	21	84	5	64	67	0	0	32	0.91
30105778--30105808	15	2.1	15	93	0	53	38	0	6	54	1.26
30105779--30105857	24	3.2	24	71	18	65	41	5	2	50	1.38
30107695--30107816	43	2.9	42	78	7	131	30	23	13	31	1.94
30132317--30132364	24	2.0	24	100	0	78	33	8	4	54	1.50
30142099--30142655	276	2.0	276	98	0	1078	36	7	21	34	1.83
30143110--30143145	18	1.9	19	88	5	56	38	0	27	33	1.57
30148125--30148635	47	10.8	47	94	2	864	32	8	29	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30148125--30148635	143	3.6	143	93	3	881	32	8	29	29	1.86
30148754--30148832	37	2.1	37	90	0	122	24	18	31	25	1.98
30150486--30150570	43	2.0	43	95	0	152	40	28	4	27	1.76
30151104--30151212	37	3.0	37	83	4	141	33	30	16	19	1.94
30153064--30153120	29	2.0	29	82	6	71	26	5	28	40	1.77
30157425--30157483	31	1.9	30	83	10	75	61	6	5	27	1.43
30163064--30163102	15	2.7	14	88	7	60	28	10	0	61	1.28
30163108--30163255	3	49.0	3	68	9	77	29	9	1	60	1.37
30163380--30163456	3	25.7	3	94	5	138	31	1	0	67	0.99
30175622--30175660	5	7.8	5	83	11	53	15	0	0	84	0.62
30175629--30175664	14	2.6	14	86	4	56	16	0	0	83	0.65
30179305--30179395	46	2.0	47	86	4	132	32	17	24	25	1.97
30179772--30179883	43	2.6	43	81	11	138	30	17	25	26	1.97
30179770--30180245	45	10.6	45	71	12	300	32	16	22	28	1.96
30179848--30180142	138	2.1	138	93	0	502	33	18	20	28	1.96
30179986--30180252	87	2.9	90	71	18	241	32	16	21	29	1.95
30180258--30180460	45	4.5	45	74	9	173	31	20	21	27	1.98
30180872--30180922	23	2.2	23	96	0	93	45	29	9	15	1.79
30182098--30182136	15	2.7	14	84	7	51	28	10	2	58	1.44
30182142--30182265	3	42.0	3	69	13	62	29	8	1	59	1.37
30182180--30182249	22	3.3	21	76	13	65	30	10	1	58	1.39
30182284--30182313	12	2.5	12	94	0	51	6	16	30	46	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30182300--30182405	39	2.7	39	88	1	149	31	24	19	24	1.98
30182780--30182872	40	2.4	39	85	3	116	25	16	25	32	1.96
30183106--30183154	22	2.3	21	85	3	62	26	0	26	46	1.53
30183121--30183166	21	2.1	22	84	11	60	23	0	30	45	1.53
30183106--30183239	35	3.8	34	74	7	92	25	0	30	43	1.60
30183541--30183579	7	5.7	7	87	6	62	15	0	28	56	1.40
30183541--30183579	13	2.9	14	92	3	62	15	0	28	56	1.40
30183537--30183588	14	3.8	13	82	2	59	13	0	30	55	1.38
30184194--30184273	8	9.9	8	74	15	58	65	5	0	30	1.14
30184219--30184257	20	1.9	21	84	5	53	71	2	0	25	0.98
30188968--30189194	43	5.2	43	80	6	240	23	20	28	28	1.99
30188984--30189099	48	2.5	48	82	6	134	23	24	26	25	2.00
30188913--30189196	43	6.5	43	76	10	236	24	18	26	30	1.98
30189268--30189312	23	2.0	24	87	12	69	26	4	2	66	1.22
30189367--30189414	3	16.0	3	100	0	96	33	0	0	66	0.92
30196495--30196541	4	11.8	4	86	0	67	53	0	17	29	1.44
30196491--30196544	16	3.4	16	89	0	81	51	0	14	33	1.43
30196486--30196544	8	7.4	8	90	0	73	50	0	13	35	1.42
30202194--30202761	177	3.3	173	79	9	615	29	24	17	29	1.97
30202360--30202678	162	2.0	161	88	1	469	29	23	17	28	1.97
30202632--30202713	43	1.9	43	87	0	119	30	25	12	31	1.92
30202775--30202861	44	2.0	44	82	8	106	26	27	14	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30202626--30202909	147	1.9	147	86	1	408	28	25	15	30	1.96
30202773--30203171	177	2.3	177	80	3	410	26	23	19	29	1.98
30202939--30203038	44	2.2	45	82	1	112	28	21	24	27	1.99
30203285--30203475	63	3.0	64	86	1	276	36	16	18	28	1.93
30204570--30204612	20	2.2	20	86	0	59	6	11	6	74	1.21
30204590--30204643	18	3.2	16	75	12	54	7	7	3	81	0.97
30217023--30217196	48	3.6	47	79	7	181	21	27	20	30	1.98
30217023--30217196	96	1.8	96	89	2	278	21	27	20	30	1.98
30222328--30222398	35	2.0	35	100	0	142	47	28	5	18	1.71
30227544--30227767	40	5.6	40	85	3	279	24	23	26	25	2.00
30227548--30227767	83	2.7	80	85	5	266	24	24	26	25	2.00
30227546--30227768	123	1.8	122	87	3	317	24	23	26	25	2.00
30233772--30234432	46	14.4	46	79	7	539	33	5	22	37	1.79
30233767--30234428	115	5.8	115	85	6	736	33	5	22	37	1.79
30234301--30234432	23	5.7	23	87	5	146	34	4	25	35	1.77
30235216--30235359	43	3.3	43	75	10	132	27	25	18	28	1.98
30236424--30236484	32	1.9	32	96	0	113	27	13	16	42	1.85
30237666--30237709	21	2.1	21	100	0	88	22	15	9	52	1.71
30239934--30239968	12	2.8	13	87	12	56	40	2	31	25	1.70
30240671--30240722	7	7.3	7	79	12	52	25	0	1	73	0.94
30240664--30240721	27	2.1	28	78	15	68	27	0	1	70	0.97
30257657--30257768	58	1.9	57	81	1	134	24	26	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30257792--30257963	47	3.8	45	77	14	156	24	29	18	27	1.98
30264394--30264454	28	2.2	28	96	0	113	16	39	22	21	1.92
30265433--30265585	47	3.3	47	84	3	209	24	28	18	28	1.98
30265553--30265600	23	2.1	23	84	0	60	29	22	14	33	1.94
30265561--30265608	23	2.1	23	92	0	78	22	25	18	33	1.97
30265514--30265658	70	2.1	70	97	0	272	25	26	16	31	1.96
30265584--30265863	47	6.0	47	73	13	186	22	27	19	30	1.98
30265467--30265682	117	1.8	117	87	0	324	25	27	17	30	1.97
30265597--30265867	94	2.9	92	80	8	269	22	28	19	29	1.98
30268839--30268883	20	2.0	24	84	16	62	44	20	11	24	1.83

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356