Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  337  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108049481--108049578
33
3.0
33
93
0
169
50
4
31
14
1.61
108049502--108049559
20
3.2
20
64
31
58
48
5
32
13
1.65
108050202--108050232
16
2.0
16
93
6
55
32
0
0
67
0.91
108051502--108051540
21
1.9
19
90
10
60
23
30
7
38
1.83
108060151--108060251
3
33.3
3
69
18
50
26
5
4
62
1.39
108062472--108062515
19
2.3
20
84
7
56
27
20
11
40
1.86
108066827--108067133
88
3.5
88
92
0
479
25
22
26
26
2.00
108066833--108067059
44
5.2
43
67
17
153
25
24
25
25
2.00
108066827--108067225
176
2.3
176
81
3
419
26
22
25
24
2.00
108067202--108067245
21
2.1
21
87
8
63
36
25
34
4
1.76
108068884--108068944
15
4.1
15
73
10
54
24
3
8
63
1.37
108073956--108074025
30
2.3
31
90
2
106
30
20
11
38
1.87
108078624--108078659
17
2.1
17
100
0
72
27
5
30
36
1.80
108083718--108083794
40
1.9
39
87
10
111
37
6
16
38
1.75
108091383--108091430
18
2.7
17
84
9
60
2
10
27
60
1.41
108094200--108094241
19
2.4
17
78
21
50
64
2
2
30
1.19
108100780--108100812
16
2.1
16
100
0
66
30
30
15
24
1.95
108101678--108101706
8
3.6
8
100
0
58
37
0
0
62
0.96
108101729--108101765
5
7.4
5
100
0
74
40
0
0
59
0.97
108102231--108102297
14
4.7
14
85
3
80
38
7
14
38
1.75
108103938--108103994
15
3.9
15
88
2
89
35
0
12
52
1.39
108104364--108104471
21
5.0
22
77
10
98
15
22
25
37
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108104376--108104471
21
4.5
21
84
2
111
14
21
26
37
1.92
108104363--108104471
42
2.5
42
79
8
139
16
22
24
36
1.94
108106070--108106139
19
3.7
19
71
21
67
55
2
7
34
1.42
108106216--108106261
17
2.5
20
80
20
64
56
4
6
32
1.45
108106339--108106404
34
2.0
32
82
11
80
53
1
6
39
1.35
108106449--108106491
11
3.9
11
81
0
50
60
4
0
34
1.17
108107180--108107249
16
4.4
16
74
13
56
75
2
18
2
1.05
108107180--108107249
21
3.5
20
71
13
54
75
2
18
2
1.05
108107489--108107537
17
2.8
17
87
9
71
4
0
38
57
1.18
108107489--108107537
18
2.7
18
90
0
80
4
0
38
57
1.18
108108209--108108288
30
2.7
30
94
0
142
38
33
7
20
1.80
108118860--108118992
58
2.3
59
83
6
173
44
1
2
51
1.23
108119158--108119212
16
3.4
16
92
0
92
27
29
5
38
1.79
108119282--108119325
10
4.4
10
86
8
63
38
4
0
56
1.20
108119279--108119324
21
2.2
21
100
0
92
34
4
0
60
1.16
108119313--108119348
14
2.7
13
91
4
54
36
0
2
61
1.11
108119373--108119408
18
2.0
18
88
0
54
33
0
0
66
0.92
108121370--108121409
20
2.0
21
85
5
55
50
2
7
40
1.44
108125301--108125334
13
2.5
14
90
4
52
64
2
5
26
1.30
108134713--108134753
21
2.0
21
85
9
57
51
4
2
41
1.36
108135262--108135305
21
2.2
20
84
12
54
34
2
20
43
1.64
108135406--108135488
43
1.9
43
95
0
148
27
18
7
46
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108135907--108135966
26
2.4
24
81
8
66
66
3
0
30
1.07
108135937--108135995
21
2.8
22
82
7
61
67
6
1
23
1.24
108136015--108136079
22
3.0
21
70
17
60
66
0
3
30
1.07
108141241--108141275
10
3.5
10
84
0
52
60
0
0
40
0.97
108141230--108141276
20
2.3
20
96
0
85
63
0
0
36
0.94
108143410--108143450
20
2.0
20
86
9
57
46
4
0
48
1.23
108144834--108145024
3
62.0
3
65
17
54
26
6
5
61
1.42
108144834--108144910
24
3.1
24
80
10
84
27
6
2
63
1.32
108148235--108148283
20
2.5
20
76
10
55
28
22
16
32
1.95
108150017--108150065
20
2.3
20
82
6
62
44
2
0
53
1.12
108156475--108156518
23
1.9
23
81
9
54
38
0
4
56
1.20
108156613--108156652
15
2.5
17
80
19
50
52
0
0
47
1.00
108156914--108156946
16
2.1
16
94
0
57
72
0
3
24
0.98
108157459--108157499
21
2.0
21
90
9
66
31
9
0
58
1.31
108158265--108158335
31
2.3
31
87
0
97
39
9
12
38
1.77
108161531--108161649
58
2.1
58
96
0
220
30
11
20
37
1.88
108163364--108163514
3
50.7
3
69
11
78
56
2
7
33
1.40
108170606--108170648
16
2.7
15
82
13
50
60
2
2
34
1.22
108171539--108171564
11
2.4
11
100
0
52
23
0
0
76
0.78
108171617--108171643
8
3.4
8
100
0
54
85
0
0
14
0.61
108172583--108172769
40
4.7
40
90
2
277
32
28
20
18
1.97
108194537--108194599
22
2.9
22
87
0
99
12
11
50
25
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108196989--108197082
25
3.9
23
73
17
75
35
6
5
53
1.49
108196989--108197090
23
4.2
26
77
9
76
34
5
5
53
1.49
108197479--108197533
20
2.5
22
82
8
69
34
5
5
54
1.46
108197450--108197645
25
8.5
24
68
24
70
32
3
7
56
1.44
108199447--108199471
13
1.9
13
100
0
50
56
8
0
36
1.29
108200000--108200041
11
3.9
11
75
6
50
66
0
33
0
0.92
108201329--108201746
75
5.6
74
85
4
554
31
20
16
32
1.94
108201761--108202479
77
9.3
73
72
15
335
34
19
17
29
1.95
108201595--108202214
158
3.9
160
82
9
702
33
20
16
29
1.95
108201334--108203671
484
4.9
465
75
14
1281
32
19
17
29
1.95
108201919--108202480
77
7.3
76
78
11
479
34
19
17
28
1.94
108201972--108203659
159
10.6
146
77
14
585
32
19
18
29
1.96
108202383--108202571
91
2.1
91
87
0
270
35
16
20
26
1.94
108202474--108202651
77
2.3
79
85
3
234
33
17
19
29
1.95
108202655--108203658
74
12.7
75
69
17
371
31
21
18
29
1.96
108202146--108203599
168
8.9
165
82
8
1549
32
19
18
29
1.96
108202731--108202906
92
2.0
89
85
8
241
32
19
20
27
1.97
108203120--108203426
73
4.0
73
80
10
344
32
21
16
29
1.95
108203283--108203428
75
1.9
75
94
0
256
31
20
15
32
1.94
108203352--108203521
93
1.8
91
87
2
250
31
20
19
29
1.97
108203454--108203671
78
2.9
74
88
4
301
30
23
17
28
1.97
108207792--108207827
13
2.8
14
84
16
51
27
25
0
47
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108207779--108207819
18
2.2
19
87
12
59
29
24
0
46
1.53
108207981--108208067
21
4.0
23
79
10
92
37
25
21
14
1.92
108207981--108208068
44
2.0
42
82
4
104
37
25
21
15
1.93
108208442--108208496
15
3.7
15
92
2
85
52
12
0
34
1.40
108209251--108209278
13
2.2
13
100
0
56
0
14
7
78
0.95
108215094--108215160
27
2.4
28
78
14
68
59
1
8
29
1.37
108215192--108215217
3
8.7
3
100
0
52
65
0
0
34
0.93
108215253--108215339
25
3.3
26
76
14
74
58
6
3
31
1.41
108215246--108215324
28
2.8
29
75
11
83
58
7
3
30
1.44
108216295--108216331
16
2.4
16
83
16
51
5
2
10
81
0.96
108217413--108217446
12
2.7
13
86
9
52
38
0
0
61
0.96
108217419--108217477
27
2.1
28
81
3
66
35
0
3
61
1.13
108221258--108221325
30
2.3
30
86
0
91
41
4
8
45
1.55
108221410--108221476
30
2.4
27
79
15
82
55
0
7
37
1.28
108221418--108221486
30
2.3
30
95
2
122
55
0
8
36
1.31
108222993--108223110
56
2.1
56
95
3
209
37
14
10
38
1.80
108228270--108228345
29
2.5
30
83
8
84
34
22
5
38
1.77
108237461--108237515
18
3.1
18
82
10
60
41
1
5
50
1.36
108237428--108237484
26
2.2
26
84
6
71
49
0
7
43
1.29
108239009--108239041
17
1.9
17
93
0
57
27
0
0
72
0.85
108240230--108240360
69
1.9
69
83
9
169
57
7
3
32
1.42
108240216--108240556
157
2.2
156
77
12
349
55
7
3
34
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
108240458--108240610
62
2.8
54
74
18
154
56
7
1
33
1.40
108240669--108240729
15
4.3
15
76
16
58
59
3
6
31
1.39
108242704--108242757
12
4.6
11
77
11
54
59
1
5
33
1.31
108244551--108244605
22
2.5
24
80
11
64
52
3
0
43
1.18
108244895--108244944
3
16.3
3
91
4
82
66
0
0
34
0.92
108245777--108245845
35
2.0
35
100
0
138
20
11
50
17
1.76
108246574--108246608
17
2.1
17
88
0
52
65
5
11
17
1.43
108246682--108246876
72
2.7
70
76
5
194
35
20
13
30
1.91
108246627--108247158
192
2.8
193
97
0
985
35
21
13
28
1.92
108253900--108253957
17
3.4
17
84
13
75
34
10
10
44
1.73

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356