genome.fa.s11.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  103  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32523398--32523496	28	3.5	29	83	6	114	30	27	15	27	1.96
32530547--32530645	28	3.5	29	82	6	114	30	26	15	28	1.96
32536957--32536997	20	2.0	20	85	9	55	31	14	7	46	1.72
32537266--32537304	14	2.9	14	84	3	53	20	5	28	46	1.72
32545998--32546039	22	1.9	22	100	0	84	42	16	9	30	1.80
32555920--32555970	27	1.9	26	84	4	66	19	27	17	35	1.94
32556010--32556069	27	2.3	27	85	2	77	21	23	20	35	1.96
32561999--32562124	46	2.7	46	92	0	207	21	21	26	30	1.98
32562349--32562386	19	2.0	20	85	15	53	36	0	23	39	1.55
32563346--32563530	79	2.3	80	78	9	189	24	27	22	25	2.00
32563346--32563530	40	4.6	39	80	6	176	24	27	22	25	2.00
32570827--32571009	79	2.3	80	81	8	212	24	27	22	25	2.00
32570829--32571009	40	4.6	40	82	6	208	23	27	23	25	2.00
32575524--32575578	27	2.0	27	89	0	83	36	23	21	18	1.95
32576294--32576401	27	3.7	31	79	13	99	22	24	19	34	1.97
32576318--32576404	27	3.3	27	91	1	131	21	24	19	34	1.96
32596540--32596622	38	2.2	38	86	0	112	14	18	28	38	1.90
32603187--32603238	24	2.2	24	96	0	95	32	23	7	36	1.83
32604750--32604806	25	2.3	25	87	0	78	70	7	12	10	1.34
32604760--32604810	25	2.0	25	100	0	102	68	3	11	15	1.34
32607760--32607869	26	4.2	25	93	4	157	34	4	23	37	1.75
32620800--32621054	55	4.8	54	80	11	271	35	16	26	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32620807--32621007	108	1.8	110	88	4	309	33	16	26	22	1.96
32621223--32621253	16	1.9	16	93	0	53	41	0	22	35	1.54
32628357--32628588	55	4.4	52	77	9	222	37	17	23	21	1.94
32633399--32633432	15	2.3	15	90	5	52	50	2	17	29	1.61
32635012--32635108	25	3.9	25	76	0	95	32	26	15	24	1.95
32635053--32635121	25	2.8	25	86	4	95	33	30	15	20	1.94
32635314--32635360	13	3.6	13	73	21	53	34	2	27	36	1.69
32635311--32635364	26	2.1	26	96	0	99	37	3	24	35	1.73
32638396--32638469	35	2.1	35	100	0	148	39	8	25	27	1.84
32639362--32639398	16	2.3	16	90	0	56	62	8	8	21	1.49
32653841--32654032	40	4.8	41	87	3	221	25	20	26	28	1.99
32659367--32659544	27	6.6	27	82	3	196	27	14	28	29	1.95
32659368--32659523	82	1.9	81	86	3	224	27	14	28	29	1.95
32659364--32659544	82	2.2	81	82	2	220	27	14	27	29	1.96
32667415--32667592	27	6.6	27	83	3	205	26	15	28	29	1.96
32667416--32667571	82	1.9	81	88	3	233	26	15	28	29	1.96
32667412--32667592	82	2.2	81	83	2	229	27	15	27	29	1.96
32672603--32672701	28	3.5	29	86	4	114	30	28	14	27	1.95
32673149--32673174	12	2.2	12	100	0	52	42	0	7	50	1.31
32683462--32683729	46	5.7	49	75	13	160	22	28	19	29	1.98
32683559--32683734	46	3.8	47	79	5	180	21	29	20	28	1.98
32683559--32683734	94	1.9	92	83	6	230	21	29	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32686902--32687061	86	1.9	85	84	3	214	28	26	19	25	1.99
32691535--32691608	31	2.4	31	95	2	132	27	28	16	28	1.97
32691821--32691872	25	2.1	25	92	3	88	26	19	21	32	1.97
32691828--32691885	25	2.3	25	93	0	98	25	20	29	24	1.99
32692825--32692909	27	3.1	27	71	18	77	36	8	16	38	1.79
32692888--32693009	27	4.6	26	80	9	129	27	5	23	42	1.77
32692915--32693050	54	2.6	52	77	12	136	29	10	22	38	1.87
32692914--32693050	27	5.2	26	73	12	109	29	10	22	37	1.87
32693040--32693131	27	3.4	28	82	5	109	42	6	21	29	1.78
32694591--32694615	10	2.5	10	100	0	50	92	0	8	0	0.40
32695417--32695490	31	2.4	31	95	2	132	27	28	16	28	1.97
32695703--32695754	25	2.1	25	92	3	88	26	19	21	32	1.97
32695710--32695767	25	2.3	25	93	0	98	25	20	29	24	1.99
32696589--32696653	27	2.4	27	79	5	69	23	24	18	33	1.96
32696707--32696791	27	3.1	27	71	18	77	36	8	16	38	1.79
32696770--32696892	27	4.6	26	81	8	122	27	5	23	43	1.76
32696922--32697013	27	3.4	28	82	5	109	42	6	21	29	1.78
32698475--32698500	8	3.2	8	100	0	52	88	0	0	11	0.52
32699291--32699364	31	2.4	31	95	2	132	27	28	16	28	1.97
32699577--32699628	25	2.1	25	92	3	88	26	19	21	32	1.97
32699584--32699641	25	2.3	25	93	0	98	25	20	29	24	1.99
32700581--32700665	27	3.1	27	73	18	86	35	9	17	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32700644--32700765	27	4.6	27	81	5	133	27	5	22	43	1.76
32700645--32700797	80	1.9	78	81	9	184	29	8	20	41	1.81
32700670--32700806	27	5.2	26	74	11	109	29	10	21	37	1.88
32700799--32700887	27	3.3	28	81	6	103	41	6	22	29	1.79
32703163--32703236	31	2.4	31	95	2	132	27	28	16	28	1.97
32703449--32703500	25	2.1	25	92	3	88	26	19	21	32	1.97
32703456--32703513	25	2.3	25	93	0	98	25	20	29	24	1.99
32704335--32704412	27	2.9	27	79	11	88	20	20	21	37	1.95
32704516--32704640	27	4.6	27	78	5	126	25	6	21	46	1.75
32704457--32704616	56	2.9	55	78	3	160	29	6	18	45	1.75
32704661--32704763	27	3.8	25	82	6	98	39	6	22	31	1.80
32704676--32704763	27	3.3	27	86	0	122	39	6	25	28	1.81
32708225--32708285	30	2.0	30	83	0	77	32	22	6	37	1.80
32710175--32710436	39	6.7	40	88	7	337	24	27	22	25	2.00
32718204--32718402	39	5.1	39	90	3	276	25	27	22	24	2.00
32723304--32723354	26	2.0	26	100	0	102	27	27	21	23	1.99
32724677--32724721	21	2.2	20	88	11	65	28	22	28	20	1.98
32724891--32724945	27	2.0	27	96	0	101	27	29	18	25	1.98
32725493--32725631	46	3.0	46	78	10	147	24	30	15	28	1.96
32725493--32725589	48	2.1	46	86	7	133	24	35	13	26	1.93
32725502--32725627	47	2.7	45	80	11	121	24	30	16	28	1.97
32727699--32727797	35	2.8	35	81	3	110	29	18	14	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32735866--32735987	43	2.9	42	73	7	138	27	22	15	34	1.94
32737071--32737096	13	2.0	13	100	0	52	53	15	0	30	1.42
32739292--32739448	40	4.0	40	87	4	219	24	18	26	30	1.98
32747425--32747454	11	2.6	11	94	5	51	0	13	0	86	0.57
32747495--32747532	13	2.8	14	88	4	51	73	2	2	21	1.07
32749197--32749248	20	2.6	20	84	0	77	11	26	36	25	1.90
32751665--32751760	24	4.0	24	86	6	133	29	22	20	27	1.99
32751686--32751758	23	3.1	23	92	2	119	30	21	20	27	1.98
32751809--32751874	20	3.3	20	82	4	89	33	21	10	34	1.88
32751911--32751958	25	1.9	25	86	0	69	25	16	25	33	1.96
32754091--32754254	40	4.1	40	94	0	283	25	29	23	21	1.99
32762815--32762878	31	2.1	31	90	0	101	25	23	15	35	1.94
32763086--32763167	24	3.4	24	88	5	112	31	20	17	30	1.95
32763218--32763282	20	3.2	20	88	0	103	32	24	12	30	1.92
32763319--32763366	25	1.9	25	86	0	69	25	16	25	33	1.96
32765595--32765659	28	2.3	28	92	5	105	33	29	7	29	1.85
32765765--32765854	27	3.2	27	78	7	83	20	24	22	33	1.97
32765775--32765837	27	2.3	28	86	2	92	22	30	19	28	1.98
32765775--32765865	27	3.2	28	78	10	80	21	27	18	31	1.97
32770826--32771032	47	4.4	47	90	3	310	28	29	8	32	1.87
32771986--32772093	49	2.2	49	95	3	193	30	28	7	33	1.85
32775151--32775594	40	10.9	40	86	4	584	24	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32775138--32775580	168	2.7	167	85	3	587	25	27	22	25	2.00
32775151--32775594	208	2.2	199	88	3	636	24	27	22	25	2.00
32780248--32780458	40	5.3	40	90	2	311	27	26	20	26	1.99
32780250--32780506	79	3.2	80	83	10	309	26	26	20	26	1.99
32781587--32781611	12	2.1	12	100	0	50	0	16	0	84	0.63
32784387--32784652	48	5.5	48	76	10	238	24	26	19	29	1.98
32784387--32784750	96	3.8	95	80	5	299	23	27	18	29	1.98
32784377--32784756	144	2.6	143	79	5	374	24	27	18	30	1.98
32784431--32784750	48	6.7	46	75	8	198	24	27	18	29	1.98
32784484--32784758	48	5.8	47	74	7	214	25	28	17	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356