genome.fa.s11.2.7.7.80.10.50.1000.190.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  190  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61844960--61844999	17	2.4	17	86	0	53	15	25	30	30	1.95
61850174--61850228	15	3.7	15	77	0	65	12	14	14	58	1.64
61850172--61850244	15	4.9	15	69	17	53	9	15	13	61	1.56
61850172--61850243	30	2.4	31	81	6	94	9	15	13	61	1.57
61852120--61852159	20	2.0	21	85	5	55	42	2	17	37	1.63
61852960--61853090	49	2.7	47	79	3	136	30	20	25	23	1.99
61860939--61860982	23	2.0	22	82	13	54	43	15	0	40	1.47
61865771--61865806	16	2.3	16	90	4	56	55	0	11	33	1.35
61872056--61872089	17	2.1	17	94	5	61	64	5	11	17	1.45
61873890--61874148	47	5.6	46	72	13	131	24	27	19	27	1.99
61873887--61874013	44	2.8	44	78	7	139	22	29	20	26	1.98
61873984--61874151	46	3.6	45	76	12	169	24	27	20	27	1.99
61875703--61875733	13	2.4	13	100	0	62	12	16	38	32	1.86
61879298--61879338	14	2.9	14	88	0	64	63	0	0	36	0.95
61881032--61881056	12	2.1	12	100	0	50	0	0	8	92	0.40
61883457--61883500	20	2.2	20	84	4	54	29	0	15	54	1.42
61883501--61883545	19	2.4	19	100	0	90	22	15	28	33	1.95
61884991--61885045	4	13.8	4	100	0	110	23	0	25	50	1.49
61885594--61885653	25	2.4	25	88	5	86	18	11	31	38	1.87
61885666--61885745	25	3.2	24	73	7	79	20	8	30	41	1.82
61885594--61885719	66	1.9	66	88	0	189	19	12	28	38	1.89
61887431--61887566	39	3.5	40	79	4	143	44	22	4	29	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61889751--61889779	14	2.1	14	100	0	58	55	20	0	24	1.44
61893152--61893329	27	6.6	27	83	3	205	26	15	28	29	1.96
61893153--61893308	82	1.9	81	88	3	233	26	15	28	29	1.96
61893149--61893329	82	2.2	81	83	2	229	27	15	27	29	1.96
61906053--61906121	27	2.5	26	92	2	84	31	30	13	24	1.93
61906053--61906150	28	3.5	28	88	2	126	31	29	13	25	1.93
61906599--61906625	12	2.2	12	100	0	54	40	0	7	51	1.30
61914171--61914348	28	6.4	28	89	2	234	32	28	13	25	1.94
61924702--61924735	17	1.9	18	88	5	52	14	14	17	52	1.74
61927085--61927110	13	2.0	13	100	0	52	38	0	15	46	1.46
61928114--61928206	46	2.0	46	97	0	177	39	8	22	29	1.84
61929496--61929561	25	3.0	21	75	16	78	28	1	15	54	1.50
61930823--61930892	28	2.5	29	86	6	108	60	2	4	32	1.31
61930971--61931020	18	2.8	18	100	0	100	46	14	10	30	1.77
61931012--61931042	14	2.2	14	94	0	53	41	16	6	35	1.74
61937074--61937100	7	3.9	7	100	0	54	88	0	11	0	0.50
61937202--61937252	26	2.0	26	85	11	70	41	39	3	15	1.66
61937883--61937924	2	21.0	2	85	9	59	2	47	2	47	1.28
61939597--61939646	25	2.0	26	84	11	68	26	0	10	64	1.25
61939592--61939663	26	2.8	26	79	10	67	22	0	12	65	1.26
61959207--61959304	27	3.5	28	85	2	117	26	11	28	33	1.91
61959235--61959293	28	2.1	27	93	3	82	30	10	25	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61967377--61967473	28	3.5	28	87	5	126	26	13	27	31	1.94
61967406--61967487	27	2.9	27	87	5	92	29	12	24	34	1.91
61974727--61974869	49	2.8	51	78	2	155	24	18	25	30	1.98
61979101--61979184	31	2.7	31	82	8	93	38	0	3	58	1.16
61981230--61981549	46	7.0	46	90	0	408	42	13	24	19	1.87
61984404--61984586	37	5.0	37	95	1	316	25	20	16	37	1.93
61984550--61984818	46	5.6	46	84	10	340	28	22	14	34	1.93
61984593--61984812	52	4.3	52	85	8	299	27	22	14	35	1.93
61984550--61984818	98	2.7	98	93	0	457	28	22	14	34	1.93
61987946--61988091	49	3.0	49	90	1	229	32	29	13	23	1.93
61989699--61989961	40	6.6	40	88	3	325	24	20	27	26	1.99
61989738--61989996	80	3.3	80	85	3	256	25	20	27	25	1.99
61997624--61997886	40	6.6	40	88	3	325	24	20	27	26	1.99
61997663--61997921	80	3.3	80	85	3	256	25	20	27	25	1.99
62004904--62005001	40	2.5	40	88	5	137	24	23	29	22	1.99
62013924--62013975	27	2.0	27	85	11	72	34	21	25	19	1.96
62023166--62023271	46	2.2	49	85	6	137	24	24	13	37	1.91
62025637--62025667	15	2.1	15	93	0	53	54	25	0	19	1.44
62034055--62034279	48	4.9	47	76	10	191	27	17	24	30	1.97
62034093--62034263	43	3.9	43	72	15	127	27	16	25	29	1.97
62034790--62035341	292	1.9	291	96	0	1032	30	7	24	38	1.82
62035559--62035622	29	2.2	29	97	0	119	15	28	35	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62036569--62036629	31	2.0	31	93	3	106	47	0	11	40	1.40
62057514--62057589	28	2.8	28	80	7	77	40	23	6	28	1.80
62057760--62057807	25	1.9	25	87	8	71	41	14	10	33	1.80
62057661--62057868	24	8.5	25	72	17	102	42	15	8	33	1.76
62057654--62057868	75	2.9	74	77	17	186	42	16	7	33	1.77
62057810--62057879	23	2.9	24	81	8	79	47	15	1	35	1.55
62057810--62057881	25	3.0	24	83	6	74	45	15	1	37	1.55
62075700--62075789	47	1.9	47	84	4	119	27	32	13	26	1.94
62080307--62080482	46	3.8	46	78	4	201	30	28	19	21	1.98
62080315--62080485	93	1.8	93	92	0	288	29	29	20	21	1.98
62096607--62096727	62	2.0	62	96	0	224	37	12	8	42	1.73
62100753--62100788	3	12.0	3	100	0	72	66	0	0	33	0.92
62100769--62100826	30	1.9	30	82	6	73	67	6	6	18	1.37
62100796--62100840	22	2.0	24	82	8	58	68	8	8	13	1.38
62100834--62100878	15	2.9	16	84	15	51	73	0	0	26	0.84
62100971--62101006	16	2.3	15	90	4	54	69	2	0	27	1.02
62102063--62102124	26	2.5	24	75	17	63	30	3	6	59	1.38
62120500--62120573	5	14.8	5	100	0	148	20	0	59	20	1.38
62121091--62121125	12	2.8	12	91	4	52	8	31	40	20	1.82
62134150--62134187	19	2.0	19	100	0	76	42	15	5	36	1.70
62145788--62145857	27	2.6	27	88	0	113	18	25	35	20	1.95
62147892--62147925	13	2.6	13	95	0	59	41	23	8	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62148926--62149038	45	2.4	47	85	4	149	48	3	6	41	1.45
62149338--62149388	18	2.5	21	73	26	56	62	1	0	35	1.06
62149433--62149482	3	16.7	3	100	0	100	68	0	0	32	0.90
62149725--62149816	36	2.6	36	87	0	130	25	14	14	46	1.81
62154391--62154602	43	5.0	43	83	4	241	33	23	13	30	1.93
62161086--62161428	40	8.6	40	90	2	476	27	27	20	24	1.99
62168520--62168862	40	8.6	40	90	2	476	27	27	20	24	1.99
62170990--62171040	16	3.2	16	81	10	68	25	25	3	45	1.71
62172984--62173030	24	1.9	25	83	12	62	65	6	4	23	1.33
62173051--62173200	3	50.3	3	72	10	67	62	2	10	26	1.38
62173099--62173129	16	1.9	16	93	0	53	58	3	16	22	1.52
62173135--62173212	15	5.4	14	71	9	50	60	1	6	32	1.30
62174882--62175367	143	3.4	143	85	1	618	28	19	20	32	1.97
62180466--62180786	47	6.8	46	71	9	155	29	19	28	21	1.98
62187930--62188106	94	1.9	93	84	6	241	30	19	28	22	1.98
62187927--62188207	47	5.8	49	69	15	167	30	19	27	22	1.98
62194811--62195032	67	3.4	64	76	7	214	31	15	28	23	1.95
62200608--62200770	3	55.3	3	71	10	61	60	2	9	27	1.41
62200664--62200694	16	1.9	16	93	0	53	58	3	16	22	1.52
62202625--62202662	18	2.1	18	85	9	51	44	26	0	28	1.54
62207633--62207700	16	4.2	16	94	0	118	27	0	36	35	1.58
62207925--62207967	15	2.9	15	89	3	61	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62208036--62208087	15	3.6	15	80	12	56	53	1	0	44	1.11
62207919--62208149	120	1.9	121	99	0	455	49	6	1	41	1.40
62207955--62208138	59	3.1	59	67	22	175	48	7	1	41	1.41
62214542--62214609	16	4.2	16	92	0	118	27	0	36	35	1.58
62214837--62214978	17	8.6	17	65	21	61	52	0	1	45	1.14
62214876--62214924	24	2.1	22	85	14	64	55	0	2	42	1.11
62214895--62214950	15	4.0	15	73	17	57	55	0	0	44	0.99
62214855--62215093	38	6.2	40	68	24	142	52	1	1	43	1.21
62214905--62214967	26	2.5	25	82	10	83	58	1	0	39	1.07
62214878--62215055	61	3.0	60	71	20	165	51	2	1	44	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356