genome.fa.s11.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  107  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33755197--33755235	15	2.6	15	87	0	51	30	2	5	61	1.31
33758763--33758813	21	2.5	21	81	6	61	56	1	5	35	1.35
33758928--33759002	35	2.1	35	82	7	89	64	1	5	29	1.24
33758928--33759004	36	2.2	34	84	9	93	62	1	5	31	1.25
33759188--33759213	9	2.9	9	100	0	52	34	0	7	57	1.27
33762427--33762461	17	2.1	17	88	0	52	45	0	2	51	1.16
33762599--33762629	14	2.3	13	94	5	53	51	0	3	45	1.17
33768868--33769157	48	6.0	48	91	0	463	36	6	25	31	1.83
33769287--33769407	37	3.3	37	92	0	206	24	17	31	26	1.97
33772813--33772933	64	1.9	65	87	1	181	21	24	4	48	1.70
33781928--33782495	294	1.9	294	88	2	845	29	15	21	32	1.95
33788714--33788867	42	3.6	42	82	1	191	30	14	23	31	1.95
33788714--33788872	85	1.9	84	84	1	210	30	14	23	31	1.94
33802947--33803167	40	5.6	40	89	2	313	27	23	27	22	1.99
33821013--33821050	18	2.1	18	100	0	76	47	0	26	26	1.52
33821016--33821057	18	2.3	18	91	0	66	40	4	28	26	1.76
33823380--33823494	44	2.6	44	84	2	151	20	17	33	29	1.95
33823468--33823595	49	2.6	49	83	4	161	27	22	27	22	1.99
33823575--33823645	32	2.2	32	97	0	133	23	23	18	33	1.96
33824081--33824120	21	2.0	20	90	5	62	10	37	30	22	1.87
33830269--33830394	46	2.8	45	85	4	164	30	17	28	23	1.97
33830455--33830580	49	2.6	49	89	3	182	26	23	29	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33831761--33831803	21	2.0	21	100	0	86	9	39	27	23	1.85
33837529--33837590	24	2.5	24	82	7	63	67	4	1	25	1.19
33837813--33837837	9	2.8	9	100	0	50	40	0	0	60	0.97
33837968--33838010	18	2.2	19	88	12	61	62	9	0	27	1.25
33838198--33838275	30	2.6	30	87	4	104	28	0	2	69	1.02
33838196--33838287	15	5.9	16	72	10	66	27	0	3	69	1.04
33838716--33838778	27	2.2	28	75	10	67	60	1	1	36	1.16
33847076--33847237	38	4.0	38	76	13	126	32	12	23	31	1.92
33847024--33847230	85	2.4	85	90	0	333	31	13	23	31	1.93
33850158--33850183	3	8.7	3	100	0	52	30	34	0	34	1.58
33851696--33851843	60	2.5	58	79	6	172	20	16	15	47	1.83
33852864--33852916	22	2.5	22	84	3	72	13	5	16	64	1.47
33854194--33854231	15	2.5	15	100	0	76	39	0	21	39	1.53
33856398--33856510	58	1.9	60	82	7	142	52	8	12	26	1.68
33857678--33857800	38	3.2	38	81	0	120	34	17	12	36	1.87
33859399--33859610	40	5.3	40	87	0	246	29	26	19	24	1.99
33864333--33864451	38	3.1	38	77	4	123	34	19	15	31	1.92
33864354--33864457	38	2.7	39	82	4	131	35	16	14	33	1.89
33864553--33864756	91	2.2	91	80	1	230	32	19	14	33	1.92
33875306--33875332	14	1.9	14	100	0	54	22	48	0	29	1.51
33877312--33877482	55	3.4	48	71	18	132	57	1	4	37	1.25
33877442--33877500	28	2.0	29	83	6	75	54	0	1	44	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33877475--33877528	25	2.1	26	86	3	74	55	1	1	40	1.21
33883380--33883454	34	2.4	31	84	10	91	40	22	18	18	1.92
33883385--33883454	29	2.2	33	85	12	94	41	21	17	20	1.90
33883448--33883588	67	2.1	67	84	8	182	33	26	19	19	1.96
33883473--33883626	39	4.3	38	80	14	200	31	27	20	20	1.97
33886625--33886798	79	2.3	74	88	8	246	20	27	21	31	1.98
33886625--33886798	36	4.6	38	86	9	241	20	27	21	31	1.98
33887052--33887504	1	453.0	1	100	0	906	0	0	0	100	0.00
33887506--33887682	1	177.0	1	94	0	174	88	4	0	6	0.62
33894037--33894264	40	5.7	40	96	1	413	21	28	20	29	1.98
33894037--33894264	79	2.9	80	95	1	413	21	28	20	29	1.98
33894037--33894264	119	1.9	119	96	0	420	21	28	20	29	1.98
33906349--33906458	42	2.6	42	88	0	157	20	33	22	22	1.97
33906505--33906540	14	2.5	15	86	9	56	8	25	30	36	1.85
33907118--33907158	17	2.4	17	87	0	55	26	26	14	31	1.95
33907592--33907644	25	2.2	25	82	3	63	24	18	24	32	1.97
33907608--33907714	25	4.4	24	73	8	72	30	17	25	26	1.97
33910571--33910808	49	4.8	49	79	6	255	29	26	17	26	1.98
33911041--33911094	27	2.0	27	85	0	72	38	12	7	40	1.72
33911390--33911448	30	2.0	30	86	0	82	32	22	10	35	1.87
33911885--33911918	16	2.1	16	100	0	68	17	17	0	64	1.29
33916341--33916575	49	4.7	49	79	5	256	28	26	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33916812--33916865	27	2.0	27	85	0	72	38	14	7	38	1.75
33919154--33919494	48	7.4	48	70	19	199	28	24	20	26	1.99
33919131--33919502	141	2.7	140	87	5	519	28	24	20	26	1.99
33926541--33926782	48	5.1	48	71	16	180	29	23	19	28	1.98
33927127--33927185	30	2.0	30	82	0	73	35	18	5	40	1.73
33934203--33934332	35	3.7	35	81	5	154	33	13	21	31	1.91
33941163--33941205	7	5.6	7	80	20	50	67	2	0	30	1.03
33963308--33963413	42	2.5	42	83	6	135	37	16	16	29	1.91
33968792--33968966	80	2.2	79	86	7	239	25	22	26	26	2.00
33968791--33968966	40	4.4	39	85	6	212	25	22	26	26	2.00
33973527--33973727	99	2.0	99	84	5	262	30	26	17	25	1.97
33973527--33973727	101	2.0	99	86	1	276	30	26	17	25	1.97
33974533--33974593	30	2.0	30	83	0	77	29	22	6	40	1.79
33977578--33977732	42	3.7	42	80	3	141	29	16	24	29	1.96
33979307--33979516	28	7.5	28	93	1	332	33	26	11	28	1.92
33986418--33986501	44	1.9	44	80	4	98	35	10	26	27	1.89
33986641--33986759	47	2.5	47	94	0	211	36	14	25	24	1.93
33986735--33986883	55	2.8	53	84	6	192	34	18	25	21	1.96
33986735--33986895	53	3.0	53	84	5	198	34	18	25	22	1.96
33993673--33994262	47	12.5	47	92	1	910	32	8	29	29	1.86
33993673--33994262	143	4.2	142	92	1	943	32	8	29	29	1.86
33994384--33994459	37	2.1	37	87	5	109	23	19	30	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33996670--33996718	2	24.5	2	100	0	98	0	0	48	51	1.00
34000490--34000666	40	4.4	40	81	4	198	24	20	27	27	1.99
34000894--34000935	22	1.9	22	85	9	59	33	9	14	42	1.78
34007993--34008160	40	4.2	40	82	3	214	23	20	27	27	1.99
34008397--34008438	22	1.9	22	85	9	59	33	9	14	42	1.78
34028399--34028694	39	7.5	39	93	1	443	18	21	28	30	1.97
34034588--34034641	25	2.1	26	86	3	74	40	1	1	55	1.21
34036791--34036817	14	1.9	14	100	0	54	29	0	48	22	1.51
34047384--34047590	91	2.3	90	80	2	227	32	14	19	33	1.92
34047682--34047785	38	2.7	39	82	4	131	33	14	16	35	1.89
34052504--34052694	39	4.9	39	79	11	178	24	19	26	29	1.98
34054273--34054386	38	3.0	38	84	0	138	37	13	14	35	1.84
34074229--34074282	25	2.1	26	86	3	74	55	1	1	40	1.21
34080182--34080477	39	7.5	39	93	1	443	30	28	21	18	1.97
34083036--34083212	52	3.5	51	88	4	243	25	31	14	28	1.94
34083036--34083212	51	3.5	51	88	3	250	25	31	14	28	1.94
34088320--34088427	26	4.2	26	89	2	155	34	9	22	34	1.86
34095195--34095302	26	4.2	26	86	0	144	33	7	23	36	1.83
34098889--34099066	52	3.5	50	82	4	214	27	28	15	29	1.96
34098889--34099066	51	3.5	52	84	6	224	27	28	15	29	1.96
34100261--34100371	44	2.5	44	92	2	186	36	24	18	20	1.94
34112076--34112115	18	2.2	19	90	4	64	40	2	0	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34114312--34114347	6	6.0	6	86	0	54	30	47	2	19	1.64
34115864--34115953	43	2.1	43	100	0	180	32	16	18	32	1.94
34117693--34117760	35	2.1	31	83	10	82	23	13	1	61	1.40
34117846--34117946	50	2.0	51	86	5	143	45	0	6	46	1.36
34119560--34119703	62	2.3	61	81	2	153	36	30	6	26	1.83
34119586--34119702	62	1.9	62	87	0	171	35	32	6	24	1.82
34132245--34132280	15	2.4	15	90	0	54	75	8	0	16	1.04
34136518--34136619	51	2.0	51	86	7	145	44	0	6	48	1.36
34138249--34138393	62	2.3	62	81	1	164	35	30	6	26	1.83
34138276--34138392	62	1.9	62	87	0	171	35	32	6	24	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356