genome.fa.s11.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  142  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45772895--45772968	29	2.6	29	86	4	96	25	31	16	27	1.96
45774876--45775114	47	5.1	47	90	0	361	27	31	9	31	1.88
45775230--45775562	47	7.1	47	91	0	522	27	30	9	32	1.89
45778984--45779164	40	4.5	40	77	5	161	24	25	22	26	2.00
45778969--45779126	80	2.0	80	82	2	192	25	25	20	27	1.99
45779469--45779542	29	2.6	29	86	4	96	27	31	16	25	1.96
45779524--45779626	43	2.4	43	100	0	206	26	35	15	22	1.94
45781640--45781878	47	5.1	47	89	0	352	27	31	9	31	1.88
45781994--45782279	47	6.1	47	90	0	419	27	30	9	32	1.89
45788506--45788581	38	2.0	38	97	0	143	13	10	22	53	1.69
45788901--45788935	16	2.1	17	89	5	54	45	2	8	42	1.49
45790772--45791143	70	5.3	70	91	0	602	31	12	17	38	1.87
45791541--45791717	48	3.7	48	81	4	187	29	21	27	21	1.98
45791538--45791717	96	1.9	96	82	4	229	29	21	27	21	1.99
45791929--45791957	11	2.6	11	100	0	58	17	13	27	41	1.87
45794425--45794837	227	1.8	227	97	0	781	36	19	6	37	1.78
45796083--45796110	4	7.0	4	100	0	56	50	0	25	25	1.50
45799536--45799569	3	11.3	3	100	0	68	67	0	0	32	0.91
45800051--45800090	15	2.6	16	80	4	55	15	5	12	67	1.38
45800317--45800433	30	3.9	30	78	3	103	45	5	21	28	1.73
45800430--45800476	25	1.9	25	91	4	78	27	0	2	70	0.99
45806184--45806484	40	7.6	40	89	4	416	25	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45811947--45812242	39	7.5	39	93	1	468	29	29	21	19	1.98
45815508--45815558	18	2.7	19	77	11	61	50	0	0	49	1.00
45815510--45815563	24	2.2	26	83	12	69	48	0	0	51	1.00
45815523--45815575	29	1.9	29	85	11	76	47	1	0	50	1.12
45825972--45826166	105	1.9	101	82	8	241	32	14	25	27	1.94
45826664--45826690	2	13.5	2	100	0	54	51	48	0	0	1.00
45828498--45828547	25	2.0	26	88	11	77	28	20	16	36	1.93
45832972--45833262	54	5.2	53	76	15	241	32	17	18	31	1.94
45832971--45833331	113	3.2	112	79	9	313	31	17	17	34	1.93
45833403--45833588	54	3.4	55	76	8	150	32	18	20	27	1.96
45834264--45834311	24	2.0	25	84	12	64	31	22	14	31	1.94
45836214--45836265	26	2.0	26	81	11	61	63	1	21	13	1.39
45836560--45836609	23	2.2	23	82	7	57	44	0	0	56	0.99
45837041--45837079	13	3.0	13	82	14	53	61	0	0	38	0.96
45837049--45837129	25	3.4	25	78	11	89	54	1	1	43	1.16
45837051--45837127	32	2.4	33	79	16	90	54	1	1	42	1.16
45837040--45837112	13	5.0	14	71	19	51	54	1	2	41	1.23
45837934--45837963	14	2.1	14	100	0	60	56	0	6	36	1.26
45840942--45841004	23	2.7	24	82	2	74	41	22	23	12	1.88
45843305--45843443	43	3.2	44	78	11	119	24	17	19	38	1.93
45843351--45843509	43	3.7	44	73	3	142	23	17	18	40	1.91
45844030--45844081	28	1.9	27	84	7	70	42	0	11	46	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45846364--45846424	30	2.1	29	87	3	86	29	11	14	44	1.81
45849021--45849088	15	4.2	15	73	15	64	72	0	1	26	0.94
45849022--45849090	17	4.1	17	80	12	72	72	0	1	26	0.93
45849022--45849085	8	7.6	9	73	19	50	75	0	1	23	0.90
45849075--45849115	21	2.0	21	85	0	55	51	4	0	43	1.23
45849523--45849585	23	2.7	23	82	0	72	34	12	26	25	1.92
45852770--45852935	47	3.5	47	86	5	212	34	11	28	25	1.91
45852857--45853041	48	3.8	48	86	5	264	34	7	26	31	1.84
45852761--45853038	98	2.9	98	81	11	290	34	9	26	29	1.88
45853177--45853294	37	3.2	37	92	2	184	26	18	29	25	1.98
45855336--45855377	22	2.0	22	90	4	68	7	45	0	47	1.30
45861781--45861885	29	3.6	29	84	5	158	26	28	15	29	1.96
45861781--45861906	58	2.2	58	98	0	243	26	28	14	30	1.95
45861781--45861906	29	4.3	29	83	6	157	26	28	14	30	1.95
45863674--45863778	29	3.6	29	84	5	158	26	28	15	29	1.96
45863674--45863799	58	2.2	58	98	0	243	26	28	14	30	1.95
45863674--45863799	29	4.3	29	83	6	157	26	28	14	30	1.95
45863901--45863977	29	2.6	29	84	12	104	29	29	14	25	1.95
45871885--45871989	29	3.6	29	84	5	158	26	28	15	29	1.96
45871885--45872010	58	2.2	58	97	0	234	27	28	13	30	1.94
45871887--45872010	29	4.3	29	82	6	144	28	28	12	30	1.93
45872112--45872190	29	2.7	30	82	13	110	30	30	13	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45874857--45875067	28	7.5	27	71	8	152	30	35	17	16	1.92
45874830--45875069	57	4.2	57	92	0	392	30	36	16	16	1.91
45876906--45876965	28	2.2	26	77	11	66	26	26	11	35	1.91
45876920--45876981	28	2.2	28	91	0	97	29	29	11	30	1.91
45876933--45876991	28	2.1	28	83	0	73	28	30	10	30	1.90
45880558--45880817	130	2.0	130	90	0	403	46	18	18	16	1.85
45880576--45880852	130	2.1	130	85	1	358	48	17	19	14	1.81
45884005--45884057	13	4.2	13	77	20	58	33	1	3	60	1.26
45884270--45884322	13	4.2	13	77	20	58	60	3	1	33	1.26
45884265--45884310	13	3.2	14	84	12	58	58	4	2	34	1.30
45893759--45893929	93	1.8	93	91	2	281	28	28	22	21	1.99
45893756--45893926	46	3.7	45	77	16	172	28	27	22	21	1.99
45901320--45901486	46	3.6	47	74	13	157	30	28	20	20	1.98
45901325--45901495	93	1.8	93	88	2	263	29	28	21	20	1.98
45901916--45901975	30	2.0	30	90	0	93	30	25	8	36	1.85
45907143--45907287	71	2.0	71	100	0	290	22	16	15	45	1.85
45911678--45911853	43	4.1	43	89	1	266	12	23	32	31	1.92
45917299--45917532	40	5.9	39	90	5	344	23	28	23	25	2.00
45919120--45919258	68	2.0	68	98	0	269	43	18	3	33	1.68
45921085--45921132	25	1.9	25	95	0	87	22	16	16	43	1.87
45926179--45926213	17	2.1	17	89	5	54	51	2	0	45	1.16
45929208--45929289	41	2.0	41	95	0	146	29	12	34	24	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45936288--45936543	40	6.5	40	85	3	288	26	28	21	23	1.99
45936288--45936543	79	3.2	78	82	5	284	26	28	21	23	1.99
45936314--45936542	119	1.9	118	84	4	300	26	29	21	22	1.99
45941414--45941523	26	4.2	26	91	0	157	32	6	24	36	1.81
45947169--45947278	26	4.2	26	94	0	166	32	6	25	35	1.81
45954819--45954891	38	1.9	38	97	0	137	39	27	8	24	1.84
45957752--45957791	11	3.6	11	93	0	62	60	0	0	40	0.97
45958686--45958725	20	2.1	18	90	9	62	37	5	7	50	1.53
45960476--45960557	9	8.6	10	75	20	61	57	0	2	40	1.12
45960489--45960557	19	3.6	19	72	18	54	59	0	2	37	1.12
45960469--45960557	28	3.1	28	72	6	90	59	0	2	38	1.10
45960476--45960557	10	8.7	9	74	22	62	57	0	2	40	1.12
45960452--45960621	9	18.0	9	68	16	60	60	1	3	34	1.25
45960551--45960615	19	3.4	19	70	18	53	58	3	4	33	1.34
45965278--45965354	34	2.3	34	82	8	86	32	12	14	40	1.84
45965290--45965367	34	2.3	34	80	10	97	28	12	15	43	1.83
45966176--45966204	5	5.8	5	100	0	58	37	0	0	62	0.96
45966399--45966448	23	2.3	20	80	16	55	46	4	0	50	1.20
45968642--45968767	28	4.6	27	72	18	100	22	15	6	55	1.63
45972266--45972290	11	2.3	11	100	0	50	36	24	8	32	1.84
45974963--45974996	15	2.3	15	94	0	59	64	5	2	26	1.30
45975356--45975402	24	2.0	24	86	0	67	70	2	6	21	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45975711--45975743	17	1.9	17	88	11	50	42	0	0	57	0.98
45979981--45980073	44	2.1	46	82	8	111	34	23	6	35	1.81
45983556--45983740	41	4.6	40	86	6	232	24	27	22	24	2.00
45983585--45983738	81	1.9	82	88	6	233	25	27	22	24	2.00
46003796--46003931	40	3.5	39	91	5	197	25	23	28	22	1.99
46011659--46011836	40	4.5	40	93	2	288	24	23	27	24	2.00
46022571--46022599	14	2.0	15	93	6	51	58	20	0	20	1.39
46022712--46022752	19	2.2	20	86	8	59	29	9	17	43	1.80
46023242--46023325	34	2.5	34	98	0	159	36	19	20	23	1.95
46023586--46023639	27	2.0	27	85	0	72	27	12	22	37	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356