genome.fa.s11.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  136  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43584253--43584331	37	2.1	37	90	0	122	24	18	31	25	1.98
43587163--43587345	80	2.3	80	81	4	201	26	21	26	25	1.99
43587163--43587345	40	4.6	39	82	6	179	26	21	26	25	1.99
43595014--43595196	40	4.6	39	83	6	188	25	21	27	25	1.99
43595015--43595196	80	2.3	81	81	4	210	25	21	27	25	1.99
43599492--43599636	40	3.6	40	83	4	184	24	25	24	26	2.00
43619294--43619356	8	7.9	8	87	0	81	42	22	25	9	1.83
43619294--43619356	16	3.9	16	89	0	99	42	22	25	9	1.83
43619591--43619682	29	3.2	29	78	7	107	26	14	31	28	1.94
43624981--43625014	9	3.7	9	88	7	50	23	32	5	38	1.79
43626045--43626102	30	1.9	30	85	0	80	36	13	22	27	1.92
43626441--43626710	47	5.8	46	72	13	180	29	18	27	24	1.98
43626487--43626710	93	2.4	94	77	14	214	29	19	27	24	1.98
43626444--43626701	140	1.8	140	81	4	324	30	18	26	24	1.98
43633729--43633786	30	1.9	30	92	0	98	34	13	22	29	1.93
43634128--43634385	47	5.5	46	77	9	229	29	17	29	23	1.97
43634128--43634390	140	1.9	141	86	5	381	29	17	28	23	1.97
43642620--43642842	96	2.3	96	86	3	288	19	17	24	39	1.92
43642620--43642842	48	4.6	48	79	4	252	19	17	24	39	1.92
43647674--43647850	49	3.6	49	83	3	255	30	26	18	24	1.98
43647673--43647855	100	1.8	100	96	0	339	30	26	19	24	1.98
43659642--43659802	40	4.0	41	92	3	263	24	21	23	30	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43666811--43666997	82	2.3	82	86	5	265	22	21	24	31	1.99
43666807--43666973	40	4.1	40	89	3	253	23	20	23	32	1.98
43668654--43668750	35	2.8	35	88	3	142	38	28	11	21	1.88
43670455--43670485	12	2.5	12	94	5	53	29	29	0	41	1.56
43670920--43670997	26	3.0	26	90	0	129	32	26	10	30	1.90
43673536--43674231	47	14.6	48	92	2	1086	32	8	29	29	1.87
43673536--43674231	96	7.3	96	92	3	1129	32	8	29	29	1.87
43678161--43678195	16	2.3	15	90	5	52	62	2	2	31	1.24
43678310--43678416	21	4.9	20	70	18	63	57	5	6	29	1.47
43678376--43678416	21	2.0	21	90	0	64	63	7	2	26	1.33
43678342--43678444	48	2.2	48	83	6	124	59	4	4	31	1.40
43678424--43678545	50	2.5	48	78	5	127	54	3	5	36	1.40
43678354--43678487	25	5.2	27	70	10	84	56	4	5	32	1.43
43678426--43678497	25	2.8	26	81	6	94	54	2	6	36	1.42
43678517--43678562	25	1.9	25	86	8	69	60	0	4	34	1.16
43679040--43679138	30	3.3	30	91	0	162	18	5	49	27	1.68
43679071--43679128	18	3.6	17	68	27	54	18	5	50	25	1.68
43679854--43680357	91	5.6	89	83	8	512	37	17	17	28	1.92
43680164--43680193	14	2.1	14	93	0	51	63	6	10	20	1.47
43680264--43680652	75	5.3	73	81	8	441	34	19	16	30	1.93
43680298--43680652	146	2.4	146	91	1	541	33	19	15	31	1.93
43680727--43680756	15	1.9	16	93	6	53	80	3	3	13	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43680787--43681118	75	4.5	74	83	7	404	31	20	16	31	1.95
43680787--43681137	76	4.7	74	82	6	397	33	19	16	30	1.94
43681307--43681351	13	3.4	13	84	6	63	68	4	11	15	1.34
43681135--43681423	100	2.9	101	87	5	408	39	18	17	23	1.92
43681331--43681498	73	2.3	74	87	1	239	34	21	17	26	1.95
43692886--43693108	40	5.6	40	85	3	227	25	21	27	26	1.99
43692961--43693143	79	2.3	80	80	1	208	26	20	27	26	1.99
43696545--43696579	16	2.3	15	90	5	52	62	2	2	31	1.24
43696696--43696755	23	2.9	20	70	15	59	56	5	6	31	1.47
43696762--43696803	22	1.9	22	85	0	57	59	7	4	28	1.44
43696728--43696946	25	9.0	25	69	12	100	55	5	5	33	1.46
43696810--43696871	16	4.1	14	75	21	54	58	1	3	37	1.24
43696773--43696882	50	2.2	50	79	10	118	55	3	6	34	1.43
43697425--43697489	30	2.2	30	88	5	96	16	4	47	30	1.67
43700352--43700422	23	3.1	23	91	0	115	19	25	21	33	1.97
43701109--43701170	26	2.3	27	88	2	90	30	22	6	40	1.79
43701109--43701171	27	2.4	27	89	2	92	30	22	6	41	1.78
43701109--43701182	27	2.8	26	82	8	87	31	18	8	41	1.80
43703961--43704001	18	2.3	18	87	4	57	4	29	2	63	1.28
43704865--43704944	31	2.6	31	92	3	128	15	28	36	20	1.92
43706795--43707019	40	5.6	40	85	6	294	24	22	28	24	1.99
43706795--43707019	83	2.8	81	84	7	298	24	22	28	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43710438--43710462	13	1.9	13	100	0	50	36	16	32	16	1.90
43713273--43713357	30	2.8	30	77	10	93	12	21	2	63	1.40
43715494--43715518	13	1.9	13	100	0	50	36	16	32	16	1.90
43719496--43719526	4	7.8	4	92	0	53	22	0	22	54	1.44
43725302--43725478	55	3.2	55	89	0	246	31	29	12	26	1.93
43725302--43725453	27	5.6	27	92	3	232	30	28	13	27	1.94
43733594--43733727	40	3.4	40	81	7	166	17	29	17	36	1.92
43733596--43733704	20	5.4	20	69	8	60	16	30	16	36	1.91
43733651--43733723	19	3.8	18	75	13	65	16	30	16	36	1.91
43733631--43733735	20	5.4	19	69	16	63	18	28	16	37	1.92
43761480--43761609	50	2.6	50	88	2	190	24	17	27	30	1.97
43766729--43766880	27	5.6	27	92	3	232	30	28	13	27	1.94
43766729--43766905	55	3.2	55	89	0	246	31	29	12	26	1.93
43774886--43775062	55	3.2	55	89	0	246	31	29	12	26	1.93
43774886--43775037	27	5.6	27	92	3	232	30	28	13	27	1.94
43776738--43776954	46	4.6	45	77	11	179	22	29	19	28	1.98
43776784--43776955	94	1.8	92	83	4	229	22	29	20	27	1.98
43780534--43780582	7	6.9	7	79	4	53	44	26	0	28	1.54
43780557--43780598	15	2.8	15	88	0	57	50	16	0	33	1.46
43782460--43782525	30	2.1	31	83	10	82	65	3	4	27	1.27
43785779--43785857	38	2.1	38	87	0	113	22	21	24	31	1.98
43785855--43785936	43	1.9	43	87	0	119	13	24	32	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43786266--43786387	45	2.8	44	86	6	151	27	20	27	23	1.99
43788502--43788713	40	5.3	40	85	3	259	24	20	27	28	1.99
43796523--43796715	40	4.8	41	89	2	259	23	20	27	27	1.99
43799800--43799843	23	1.9	23	95	0	79	56	2	0	40	1.11
43801051--43801096	19	2.3	20	92	3	76	26	10	17	45	1.81
43802506--43802591	32	2.7	32	81	1	102	52	16	3	27	1.60
43805696--43805743	17	3.1	17	74	22	59	58	18	10	12	1.62
43806802--43806859	29	2.0	29	93	0	98	58	10	3	27	1.47
43806891--43806961	22	3.2	22	73	11	65	60	4	11	23	1.48
43807680--43807819	70	2.0	70	98	0	271	30	8	11	49	1.69
43811151--43811417	46	5.7	47	76	9	210	23	28	19	28	1.98
43819298--43819383	28	3.0	29	83	5	104	26	15	29	29	1.96
43833454--43833544	34	2.7	34	78	11	89	26	26	18	28	1.98
43833598--43833685	38	2.3	38	100	0	176	30	37	17	14	1.90
43834111--43834156	19	2.4	19	85	7	58	19	39	23	17	1.92
43849790--43849851	27	2.3	27	97	0	115	41	25	20	11	1.86
43874228--43874284	30	1.9	30	85	7	80	42	22	5	29	1.76
43882081--43882171	45	2.0	45	93	0	155	36	24	14	25	1.93
43882100--43882175	21	3.5	21	66	16	55	36	26	13	23	1.91
43890560--43890651	6	14.8	6	68	18	55	48	15	16	19	1.81
43890577--43890680	32	3.3	32	89	4	149	50	13	15	21	1.78
43890817--43890918	27	3.8	26	84	5	114	36	19	23	20	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43891079--43891140	22	2.8	22	76	13	74	40	24	17	17	1.91
43891611--43891987	27	14.3	27	82	7	427	24	20	18	36	1.95
43891567--43891994	81	5.4	80	83	6	446	25	20	17	35	1.95
43891910--43891946	19	1.9	19	94	0	65	27	21	5	45	1.73
43891883--43891973	46	2.0	46	91	0	146	24	20	14	40	1.90
43891976--43892379	27	15.0	25	73	13	83	33	8	19	38	1.82
43891975--43892373	81	4.9	80	81	6	243	33	8	19	38	1.82
43892031--43892373	54	6.4	54	84	0	373	32	8	19	39	1.82
43892031--43892373	81	4.2	81	84	0	400	32	8	19	39	1.82
43894951--43894983	14	2.5	13	90	9	57	60	12	15	12	1.59

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356