Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  331  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106504323--106504475
47
3.2
47
85
2
191
22
16
29
31
1.96
106508512--106508571
23
2.6
23
78
0
66
51
1
5
41
1.33
106510085--106510124
21
2.0
20
95
5
71
5
10
15
70
1.32
106516553--106516579
11
2.5
11
100
0
54
51
0
0
48
1.00
106524325--106524363
19
2.1
19
85
0
51
48
12
7
30
1.69
106525706--106525753
15
3.3
15
77
13
55
39
2
10
47
1.49
106525942--106525982
19
2.2
19
87
12
59
46
0
24
29
1.53
106527684--106527791
26
4.2
26
96
0
198
36
25
6
31
1.82
106533482--106533563
26
3.2
26
94
0
146
36
25
6
31
1.81
106544833--106544872
21
1.9
21
85
10
55
55
0
2
42
1.13
106544824--106544877
25
2.0
26
82
13
65
53
0
1
44
1.11
106556544--106556584
21
2.0
21
100
0
82
43
7
4
43
1.53
106562868--106562931
26
2.6
23
80
9
65
57
1
3
37
1.24
106563187--106563220
3
11.3
3
100
0
68
67
0
0
32
0.91
106568482--106568528
21
2.2
22
92
3
78
21
19
38
21
1.94
106570134--106570180
21
2.2
22
92
3
78
21
19
38
21
1.94
106577905--106577956
8
6.0
8
75
16
50
65
3
1
28
1.21
106577905--106577957
18
3.0
17
83
5
70
64
3
1
30
1.22
106578404--106578527
64
1.9
65
81
4
153
42
12
4
40
1.62
106596752--106596906
27
6.1
27
71
19
118
33
9
28
28
1.89
106596805--106596936
21
6.0
21
78
13
131
33
9
28
28
1.89
106596779--106596936
48
3.4
47
85
6
218
32
10
27
29
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106601103--106601138
3
12.0
3
93
0
63
33
2
0
63
1.08
106602870--106602902
11
2.9
12
86
13
52
33
0
0
66
0.92
106602938--106602982
24
2.0
23
83
12
58
57
4
2
35
1.31
106602940--106602982
21
1.9
24
86
13
65
60
2
2
34
1.22
106603025--106603088
30
2.1
30
97
0
119
57
12
3
26
1.50
106603440--106603479
20
2.0
20
85
5
53
27
5
2
65
1.27
106603469--106603524
21
2.5
24
85
11
82
41
3
0
55
1.17
106604041--106604203
56
2.9
56
94
0
290
36
12
15
34
1.85
106606478--106606535
20
2.8
21
81
5
73
32
5
24
37
1.77
106618041--106618080
20
2.0
20
85
5
53
70
10
0
20
1.16
106618377--106618432
23
2.5
24
85
8
73
39
1
19
39
1.62
106620937--106620981
22
2.0
22
91
8
74
46
8
20
24
1.78
106623930--106624054
43
2.9
44
86
4
182
31
24
11
33
1.90
106624191--106624229
20
2.0
20
84
0
51
48
2
2
46
1.29
106624232--106624282
20
2.5
20
87
9
77
31
0
3
64
1.11
106624238--106624282
21
2.2
21
96
4
83
26
0
4
68
1.08
106638185--106638304
24
5.0
24
87
3
170
27
20
21
30
1.98
106638354--106638420
20
3.3
20
89
0
107
31
20
13
34
1.92
106638354--106638409
11
5.5
11
71
16
57
30
19
14
35
1.91
106638457--106638504
25
1.9
25
91
0
78
25
14
25
35
1.94
106640900--106640943
19
2.4
18
85
7
54
40
9
0
50
1.34
106643641--106643713
26
2.8
25
81
8
92
41
8
13
36
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106646395--106646549
39
4.0
39
90
0
238
27
23
20
27
1.99
106653858--106653895
17
2.2
17
100
0
76
36
31
10
21
1.87
106654684--106654838
39
4.0
39
89
0
229
27
23
20
28
1.99
106657761--106657885
58
2.2
58
86
2
171
35
14
24
26
1.93
106660622--106660646
11
2.3
11
100
0
50
24
8
24
44
1.80
106660944--106660969
10
2.6
10
100
0
52
65
0
0
34
0.93
106667584--106667769
41
4.5
41
89
0
282
24
22
20
32
1.98
106679052--106679104
22
2.4
22
93
3
88
35
16
18
28
1.93
106688928--106688972
18
2.5
18
85
0
63
17
35
22
24
1.95
106691052--106691153
42
2.4
42
81
0
114
15
41
21
21
1.90
106691101--106691334
104
2.2
104
84
3
301
20
31
23
23
1.98
106691101--106691365
104
2.5
104
83
1
298
20
31
23
23
1.98
106704576--106704622
23
2.0
23
92
8
78
65
17
2
14
1.36
106717499--106717600
42
2.4
42
81
0
114
15
41
21
21
1.90
106717553--106717780
104
2.2
103
84
3
289
20
30
24
24
1.99
106717548--106717823
104
2.7
105
80
3
274
20
30
24
24
1.98
106727705--106727765
6
10.2
6
72
13
54
52
1
0
45
1.10
106727705--106727765
17
3.8
17
74
12
56
52
1
0
45
1.10
106730717--106730765
24
2.1
23
96
3
89
65
16
2
16
1.37
106741052--106741106
16
3.4
16
82
5
67
38
1
0
60
1.08
106747195--106747246
24
2.2
24
92
0
86
28
17
28
25
1.97
106754067--106754108
17
2.6
16
88
7
66
78
2
0
19
0.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106754057--106754112
29
1.9
29
86
13
80
75
1
0
23
0.90
106755523--106755558
17
2.1
18
89
5
56
72
0
0
27
0.85
106760218--106760352
67
2.0
67
100
0
270
33
16
16
34
1.91
106761724--106761792
21
3.4
20
69
11
52
52
0
1
46
1.09
106761816--106761850
17
2.1
17
89
5
54
62
0
0
37
0.95
106763660--106763728
33
2.1
34
94
2
122
44
5
10
39
1.62
106763947--106763980
6
5.8
6
89
6
52
44
0
2
52
1.16
106776074--106776103
5
5.8
5
92
7
51
76
3
0
20
0.92
106778144--106778177
12
2.9
12
86
4
52
32
0
0
67
0.91
106778301--106778363
30
2.1
30
96
0
117
57
12
3
26
1.51
106791368--106791433
26
2.4
27
85
5
80
60
1
1
36
1.15
106795417--106795605
56
3.4
56
72
4
148
36
20
14
28
1.92
106797674--106797713
10
3.9
10
93
3
62
52
5
0
42
1.23
106797674--106797722
20
2.4
21
83
10
66
53
4
0
42
1.20
106797861--106797892
9
3.6
9
95
0
55
34
6
0
59
1.23
106797861--106797940
9
8.4
9
74
9
52
33
3
1
61
1.22
106797861--106797940
18
4.2
18
75
12
63
33
3
1
61
1.22
106799431--106799472
4
10.8
4
79
5
50
23
0
4
71
1.05
106800981--106801014
15
2.3
15
90
5
52
32
0
0
67
0.91
106805219--106805316
38
2.5
39
91
3
153
30
26
23
19
1.98
106805291--106805334
16
2.8
16
89
0
70
25
22
27
25
2.00
106808020--106808061
15
2.9
15
76
23
54
59
2
11
26
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106810198--106810250
24
2.2
24
86
6
72
43
11
7
37
1.69
106810210--106810261
24
2.2
24
82
6
61
48
7
9
34
1.65
106824362--106824504
72
2.0
72
88
0
214
17
27
18
37
1.93
106826885--106826921
7
5.1
7
90
3
56
40
2
13
43
1.58
106832244--106832352
26
4.2
26
93
0
191
33
6
24
35
1.81
106833972--106834111
27
5.2
27
87
2
174
18
24
22
35
1.96
106833972--106834111
54
2.6
55
88
2
194
18
24
22
35
1.96
106837039--106837083
24
1.9
24
86
4
65
51
4
0
44
1.21
106837056--106837109
27
2.0
28
85
3
74
46
1
0
51
1.11
106836984--106837139
80
2.0
78
79
13
169
48
3
0
48
1.17
106837090--106837198
33
3.5
32
73
19
113
50
2
0
46
1.15
106837116--106837160
11
4.1
11
81
18
58
46
2
0
51
1.13
106837126--106837182
27
2.3
25
88
11
82
47
3
0
49
1.18
106837188--106837238
21
2.4
21
93
0
84
56
1
0
41
1.10
106837175--106837280
21
4.8
21
70
17
63
51
0
1
45
1.18
106837782--106837821
20
2.0
21
95
5
73
57
2
5
35
1.34
106838138--106838207
22
3.2
22
68
8
61
65
2
11
20
1.37
106840901--106841183
93
3.1
92
88
3
401
48
18
11
21
1.80
106845833--106845897
7
9.3
7
93
0
103
38
0
0
61
0.96
106849849--106849880
5
6.6
5
92
7
57
81
0
0
18
0.70
106849850--106849880
14
2.2
14
100
0
62
80
0
0
19
0.71
106854302--106854333
5
6.6
5
92
7
57
81
0
0
18
0.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
106854303--106854333
14
2.2
14
100
0
62
80
0
0
19
0.71
106864817--106864874
31
1.9
30
82
3
71
55
13
3
27
1.55
106865421--106865454
17
2.0
17
88
0
50
58
0
35
5
1.22
106865426--106865470
22
2.0
22
82
4
54
53
0
44
2
1.13
106873358--106873400
15
2.9
14
82
6
50
76
0
6
16
0.99
106889028--106889070
12
3.5
12
80
3
50
65
0
18
16
1.28
106896254--106896305
23
2.3
23
90
6
79
42
9
13
34
1.77
106900707--106900758
23
2.3
23
90
6
79
42
9
13
34
1.77
106902705--106902755
22
2.4
20
78
18
50
60
9
1
27
1.39
106902866--106902924
25
2.4
24
80
5
64
28
3
3
64
1.26

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356