Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  145  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46653887--46653926
21
1.9
21
89
0
62
32
25
15
27
1.95
46657264--46657339
40
1.9
40
88
0
116
35
36
14
13
1.85
46660543--46660577
14
2.5
14
90
0
52
34
2
0
62
1.10
46664695--46664776
26
3.2
26
92
0
146
32
7
24
35
1.83
46669375--46669410
16
2.2
16
100
0
72
22
19
38
19
1.93
46670033--46670071
18
2.1
19
95
4
71
48
0
5
46
1.24
46670114--46670189
28
2.8
27
69
20
68
43
1
0
55
1.08
46670127--46670416
120
2.4
120
92
3
494
43
2
4
50
1.34
46670257--46670312
15
4.1
14
78
14
55
41
0
0
58
0.98
46670187--46670374
61
3.1
61
68
19
185
40
3
6
49
1.44
46670368--46670402
18
2.0
17
88
5
52
45
0
0
54
0.99
46670356--46670630
147
1.9
149
95
1
500
47
3
3
46
1.35
46670711--46670805
45
2.1
45
86
1
129
33
26
5
34
1.79
46670786--46670853
16
4.2
16
94
0
109
36
35
0
27
1.58
46676843--46676907
3
21.7
3
100
0
130
66
0
33
0
0.92
46676899--46677969
574
1.9
567
93
1
1836
35
16
15
31
1.91
46678781--46678827
21
2.2
21
77
7
51
46
17
2
34
1.59
46681035--46681098
27
2.4
27
86
0
83
25
18
20
35
1.95
46684448--46684580
48
2.8
48
77
6
144
30
18
17
33
1.94
46687017--46687152
48
2.8
48
84
2
184
30
16
18
34
1.93
46693458--46693504
24
2.0
24
95
0
85
25
8
14
51
1.71
46695518--46695550
2
16.5
2
100
0
66
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46701698--46701735
15
2.5
15
100
0
76
36
7
26
28
1.84
46715964--46716120
43
3.7
43
75
4
147
24
18
25
31
1.98
46716698--46716722
7
3.6
7
100
0
50
40
0
16
44
1.47
46731561--46731599
14
2.8
13
88
3
51
15
2
2
79
0.95
46737312--46737433
43
2.8
43
82
4
131
26
15
27
31
1.96
46743119--46743145
8
3.4
8
100
0
54
14
0
0
85
0.61
46754315--46754510
35
5.6
35
80
4
182
30
10
25
33
1.90
46774014--46774231
40
5.5
40
87
2
298
24
22
27
25
2.00
46776067--46776435
47
7.9
47
73
17
220
27
17
29
25
1.97
46776067--46776285
46
4.7
46
77
12
189
27
17
29
25
1.98
46783589--46783619
12
2.6
12
100
0
62
48
0
12
38
1.42
46785294--46785578
136
2.1
136
95
0
516
32
24
17
25
1.97
46787371--46787474
26
4.0
26
91
0
172
35
25
7
31
1.84
46789697--46789741
9
5.0
9
100
0
90
33
11
11
44
1.75
46789908--46789970
19
3.3
19
74
12
58
58
9
1
30
1.39
46789964--46790002
18
2.1
18
85
4
51
69
7
0
23
1.14
46791966--46792007
20
2.1
20
95
0
75
30
14
19
35
1.91
46793657--46793834
57
3.1
57
79
6
191
28
15
8
46
1.76
46804289--46804348
30
2.0
30
87
6
86
28
25
6
40
1.80
46807891--46808046
39
4.0
39
83
2
163
18
21
28
30
1.97
46807858--46808040
39
4.7
38
79
5
152
19
23
28
28
1.98
46816689--46816715
13
2.1
13
100
0
54
59
18
14
7
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46819979--46820014
18
2.0
18
100
0
72
16
33
16
33
1.92
46831912--46831949
19
2.0
19
100
0
76
26
26
21
26
1.99
46839531--46839596
27
2.4
27
77
5
71
16
9
31
42
1.80
46849979--46850011
15
2.1
16
88
5
50
39
9
6
45
1.61
46854320--46854544
40
5.7
40
84
6
251
24
27
21
25
1.99
46854476--46854553
40
1.9
41
82
10
97
26
28
20
24
1.99
46860668--46860930
40
6.6
39
86
4
296
25
27
21
25
1.99
46860862--46860939
40
1.9
41
82
10
97
26
28
20
24
1.99
46870049--46870203
57
2.7
55
79
14
161
43
0
2
53
1.19
46870077--46870213
60
2.4
56
80
10
152
45
0
2
51
1.18
46873407--46873464
30
1.9
30
92
0
98
32
15
25
25
1.95
46873808--46873973
47
3.5
46
73
9
147
28
16
31
23
1.96
46875680--46875871
40
4.8
40
78
10
171
25
22
27
25
2.00
46875733--46875897
79
2.1
79
82
6
192
26
21
26
25
1.99
46883761--46883945
40
4.7
40
80
7
200
24
22
28
25
1.99
46883814--46883968
79
2.0
79
82
7
190
25
20
27
25
1.99
46888197--46888274
7
10.9
7
82
5
84
19
1
34
44
1.59
46888202--46888272
29
2.5
28
81
6
88
19
1
32
46
1.59
46888197--46888274
15
5.4
15
81
7
81
19
1
34
44
1.59
46892247--46892333
29
2.9
30
93
3
149
31
16
26
26
1.96
46894024--46894101
29
2.7
28
84
11
104
25
14
30
29
1.94
46894054--46894443
174
2.2
174
98
0
744
30
14
24
30
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46896130--46896302
47
3.7
47
72
16
133
27
20
30
21
1.98
46896178--46896492
47
6.7
47
70
13
157
27
21
27
23
1.99
46896126--46896346
94
2.4
94
82
3
241
27
21
28
21
1.99
46897238--46897356
55
2.2
56
80
6
127
26
22
26
24
2.00
46898587--46898710
47
2.7
46
76
16
130
25
29
18
27
1.98
46901829--46901906
34
2.3
35
95
2
140
60
3
8
26
1.44
46902079--46902126
24
2.0
24
84
8
62
58
4
6
31
1.42
46902370--46902430
30
2.0
30
83
0
77
67
0
4
27
1.11
46902540--46902639
35
2.9
36
81
10
111
60
1
7
32
1.30
46902599--46902639
21
2.0
21
90
4
66
58
2
4
34
1.32
46922540--46922616
34
2.3
34
95
0
136
58
3
10
27
1.49
46922799--46922846
24
2.0
24
84
8
62
58
4
6
31
1.42
46923022--46923145
30
3.7
31
72
18
81
62
1
4
31
1.26
46923081--46923127
16
2.9
16
75
6
51
70
0
4
25
1.05
46926813--46927033
40
5.6
40
86
7
258
24
21
28
25
1.99
46926813--46927033
79
2.8
81
84
8
267
24
21
28
25
1.99
46926891--46927052
40
4.1
40
85
7
120
24
22
29
24
1.99
46926821--46927066
79
3.1
79
78
9
193
26
21
27
25
1.99
46933930--46934192
39
6.7
40
87
6
326
24
22
27
25
2.00
46934089--46934211
40
3.1
40
84
5
117
23
21
29
25
1.99
46939179--46939337
23
6.8
23
74
11
94
27
22
18
31
1.97
46939240--46939337
45
2.2
46
83
5
119
28
24
17
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46941377--46941508
49
2.7
49
80
11
162
28
26
18
27
1.98
46941378--46941551
98
1.8
97
83
6
239
29
27
17
25
1.98
46943714--46943767
20
2.7
20
97
0
99
18
12
20
48
1.81
46947987--46948122
59
2.3
59
93
2
236
47
6
4
41
1.50
46948422--46948455
15
2.3
15
89
0
50
17
23
5
52
1.66
46950689--46950873
42
4.4
42
88
0
235
25
21
35
17
1.95
46950702--46950887
84
2.2
84
88
0
264
23
21
34
19
1.96
46950924--46951011
42
2.1
42
91
4
142
27
28
30
13
1.94
46954135--46954237
21
4.8
21
77
14
111
58
0
4
35
1.26
46954133--46954249
23
5.2
23
73
21
90
57
0
5
35
1.29
46956298--46956459
73
2.2
73
85
1
236
35
19
15
29
1.93
46956258--46956765
160
3.2
158
79
8
521
34
21
16
26
1.95
46956613--46956775
72
2.2
72
82
8
204
41
22
15
21
1.90
46956649--46956897
123
2.0
124
88
3
369
40
22
14
23
1.90
46956775--46956951
71
2.5
70
84
3
223
35
22
13
28
1.92
46976785--46976822
5
7.8
5
94
5
69
78
0
0
21
0.74
46976789--46976819
9
3.3
9
91
8
53
80
0
0
19
0.71
46976779--46976822
14
3.1
14
93
3
70
77
0
0
22
0.77
46983338--46983417
40
2.0
39
97
2
151
32
21
7
38
1.81
46987593--46987652
30
2.0
30
90
0
93
28
25
8
38
1.84
46989868--46989903
16
2.3
15
86
9
54
36
0
0
63
0.94
46990592--46990696
38
2.7
39
75
10
108
22
19
27
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46991398--46991486
42
2.1
42
97
2
171
34
6
14
43
1.72
46993716--46993823
26
4.2
26
90
0
180
32
7
24
36
1.83
46995298--46995350
26
2.0
26
82
7
63
39
20
15
24
1.91
46995362--46995401
21
1.9
21
90
10
64
15
15
20
50
1.79
46999870--46999905
16
2.3
15
86
9
54
36
0
0
63
0.94
47000217--47000258
16
2.7
16
78
14
52
42
0
0
57
0.99
47001718--47001826
38
2.8
39
75
6
105
23
20
25
30
1.98
47003063--47003092
8
3.6
8
95
4
51
10
0
0
90
0.47
47003063--47003092
9
3.4
9
90
9
53
10
0
0
90
0.47
47015786--47015825
21
2.0
21
90
5
64
22
42
10
25
1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356