genome.fa.s11.2.7.7.80.10.50.1000.342.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  342  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109450744--109450774	14	2.1	15	94	5	55	25	25	0	48	1.52
109451525--109451567	11	4.0	11	84	6	61	18	46	6	27	1.75
109452106--109452178	18	4.1	18	85	0	101	32	19	12	35	1.89
109452489--109452523	14	2.5	14	100	0	70	45	11	17	25	1.81
109456225--109456278	11	5.0	11	81	4	65	18	44	5	31	1.73
109456909--109456967	29	2.0	29	100	0	118	40	0	30	28	1.57
109459051--109459096	23	2.0	23	100	0	92	26	43	17	13	1.85
109460297--109460598	151	2.0	151	98	0	577	30	18	20	30	1.96
109461276--109461379	51	2.0	51	94	0	181	49	5	18	26	1.70
109465515--109465685	87	2.0	87	90	2	272	30	20	16	31	1.95
109465755--109466056	153	2.0	153	88	1	453	36	17	21	24	1.94
109467266--109467306	21	2.0	21	90	4	66	19	36	2	41	1.65
109467896--109467926	14	2.1	15	94	5	55	25	25	0	48	1.52
109470703--109470745	20	2.2	20	100	0	86	27	18	18	34	1.95
109472392--109472423	7	4.6	7	100	0	64	87	0	0	12	0.54
109483899--109483930	5	6.6	5	92	7	57	18	0	0	81	0.70
109483899--109483929	14	2.2	14	100	0	62	19	0	0	80	0.71
109485944--109485979	18	2.0	18	100	0	72	33	16	27	22	1.95
109500221--109500335	57	2.0	59	89	3	180	29	27	18	24	1.98
109504843--109504910	12	5.7	11	74	16	55	16	1	7	75	1.10
109504842--109504910	26	2.9	23	75	21	70	17	1	7	73	1.12
109504843--109504912	24	2.9	24	72	21	65	15	2	7	74	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109517201--109517260	29	2.1	29	100	0	120	23	26	16	33	1.96
109518849--109518923	39	1.9	39	94	0	132	29	12	18	40	1.87
109529968--109530065	23	4.3	23	90	2	162	31	26	21	20	1.98
109529975--109530063	45	2.0	45	95	0	160	31	26	22	19	1.97
109530214--109530361	75	2.0	75	100	0	296	33	21	8	37	1.83
109532752--109532781	12	2.5	12	94	0	51	53	16	13	16	1.73
109541339--109541368	14	2.1	14	93	0	51	36	0	0	63	0.95
109544645--109544670	12	2.2	12	100	0	52	38	26	15	19	1.91
109549070--109549100	2	15.5	2	100	0	62	51	0	48	0	1.00
109551439--109551700	3	87.0	3	69	16	98	61	4	6	28	1.40
109551576--109551632	25	2.2	26	84	9	73	61	3	8	26	1.42
109551620--109551672	20	2.7	20	87	0	70	62	5	1	30	1.29
109551616--109551700	17	5.1	17	73	14	70	67	3	2	27	1.19
109551619--109551700	23	3.7	21	76	12	74	67	3	2	26	1.20
109551619--109551719	9	10.7	9	72	17	53	67	3	2	25	1.22
109554659--109554728	37	1.9	36	82	5	88	31	21	18	28	1.97
109564875--109564911	15	2.3	17	86	9	51	21	27	0	51	1.48
109579058--109579102	22	2.0	22	100	0	90	42	17	4	35	1.70
109585333--109585406	18	4.1	18	82	0	85	29	16	16	37	1.90
109601696--109601750	27	2.0	27	89	0	83	29	18	21	30	1.97
109604351--109604421	31	2.3	32	85	7	101	42	8	8	40	1.66
109607304--109607349	17	2.8	16	80	3	56	17	4	8	69	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109608573--109608680	53	2.0	53	100	0	216	33	16	24	25	1.96
109608789--109608868	37	2.1	38	95	4	153	37	2	15	45	1.59
109615919--109615978	12	5.1	12	76	11	52	75	1	3	20	1.04
109621568--109621625	30	1.9	30	82	6	73	20	29	29	20	1.98
109629282--109629410	18	7.2	18	84	0	150	34	14	20	29	1.93
109632991--109633042	13	4.0	13	79	0	59	38	25	5	30	1.79
109636213--109636237	11	2.3	11	100	0	50	76	0	0	24	0.80
109640443--109640474	16	2.0	16	93	0	55	53	0	3	43	1.16
109648110--109648156	20	2.3	20	100	0	94	17	29	25	27	1.97
109653406--109653436	14	2.1	15	94	5	55	25	25	0	48	1.52
109661907--109661931	13	1.9	13	100	0	50	48	16	0	36	1.46
109669290--109669343	21	2.6	21	81	0	63	29	3	5	61	1.36
109673703--109673760	28	2.1	28	93	0	98	39	3	20	36	1.70
109674935--109675042	26	4.2	26	96	0	189	29	5	26	37	1.79
109681993--109682074	26	3.2	26	98	0	155	30	8	26	34	1.86
109687989--109688065	22	3.7	21	75	14	61	42	15	6	35	1.73
109688018--109688096	35	2.2	37	86	13	121	35	16	10	37	1.82
109688039--109688094	17	3.5	15	88	9	60	35	16	10	37	1.83
109688025--109688096	19	3.9	19	89	10	123	36	15	11	37	1.83
109688456--109688649	45	4.3	45	88	1	282	24	27	14	33	1.95
109688458--109688633	89	2.0	89	90	0	280	25	27	14	32	1.95
109688663--109688957	78	3.8	78	89	1	457	25	23	19	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109689029--109689322	78	3.8	78	91	1	464	25	25	18	30	1.98
109688553--109689427	365	2.4	365	90	2	1369	25	24	18	32	1.97
109688751--109689269	287	1.8	283	87	2	727	25	23	18	32	1.97
109696311--109696342	16	2.0	16	93	0	55	28	15	6	50	1.68
109700491--109700529	18	2.1	19	85	4	53	33	20	0	46	1.51
109700939--109701065	45	2.8	45	97	0	236	40	23	18	17	1.90
109701463--109701512	15	3.2	16	75	13	52	38	22	0	40	1.54
109701778--109701823	6	7.8	6	83	13	51	34	13	0	52	1.40
109706145--109706179	18	2.0	18	88	5	54	68	0	0	31	0.90
109706435--109706477	22	1.9	23	85	4	61	46	13	4	34	1.65
109706469--109706523	18	2.9	19	94	5	103	36	16	10	36	1.84
109706642--109706680	21	1.9	20	84	5	51	10	2	15	71	1.23
109724357--109724398	7	6.3	7	86	8	61	23	0	2	73	0.94
109726941--109727004	21	3.0	21	86	0	92	20	21	9	48	1.77
109730163--109730196	11	3.1	11	91	0	59	64	11	8	14	1.49
109744150--109744189	19	2.0	22	85	14	59	32	47	2	17	1.61
109744251--109744390	27	5.2	27	88	5	153	35	21	24	19	1.96
109744251--109744390	54	2.6	54	87	2	174	35	21	24	19	1.96
109744493--109744568	26	2.8	27	88	4	100	31	13	21	34	1.91
109746010--109746119	26	4.2	26	95	0	175	37	23	5	33	1.78
109751962--109751996	18	1.9	18	94	0	61	34	14	14	37	1.86
109757243--109757315	36	2.0	36	100	0	146	30	21	16	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109760566--109760590	13	1.9	13	100	0	50	32	16	4	48	1.64
109761541--109761710	86	2.0	84	97	2	322	24	24	7	43	1.80
109769601--109769675	18	4.2	18	82	0	96	29	20	13	37	1.90
109769606--109769676	36	2.0	36	88	0	106	30	19	11	38	1.87
109774605--109774906	153	2.0	153	85	1	408	37	16	20	24	1.93
109779440--109779487	19	2.5	20	86	6	64	29	0	8	62	1.24
109779660--109779696	18	2.1	18	89	0	56	45	10	5	37	1.62
109783435--109783492	25	2.3	23	81	16	71	70	5	1	22	1.16
109784730--109784784	21	2.6	21	91	0	92	25	9	36	29	1.87
109785803--109785838	19	1.9	19	94	5	65	41	11	19	27	1.85
109788090--109788254	82	2.0	82	96	0	303	38	19	13	28	1.90
109791426--109791457	15	2.1	16	94	5	57	68	3	0	28	1.04
109794331--109794373	21	2.0	22	90	4	70	58	4	0	37	1.19
109794429--109794488	20	2.9	20	76	13	68	55	5	5	35	1.44
109794396--109794539	23	6.1	22	70	15	74	53	6	4	35	1.48
109794439--109794538	25	4.1	25	76	6	100	53	6	6	35	1.50
109794710--109794836	12	10.7	12	71	21	65	60	4	2	32	1.30
109794711--109794794	24	3.6	24	75	18	72	60	3	3	32	1.31
109794923--109794976	3	18.0	3	77	7	56	59	0	3	37	1.15
109794915--109794973	18	3.3	17	83	9	73	57	0	3	38	1.15
109794923--109794978	18	2.8	20	86	7	80	57	0	3	39	1.16
109798277--109798371	38	2.5	37	78	13	97	36	12	1	49	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109805157--109805420	86	3.1	86	91	0	420	25	22	24	27	2.00
109805211--109805345	42	3.2	42	63	19	107	26	25	22	24	2.00
109805445--109805643	45	4.4	45	66	11	118	26	19	25	28	1.99
109805368--109805662	136	2.2	134	94	2	511	26	20	23	29	1.99
109805647--109806285	176	3.6	178	83	2	675	26	16	26	30	1.97
109805719--109806285	308	1.8	308	90	0	918	27	16	26	29	1.97
109805634--109806285	132	4.9	134	84	4	752	27	16	26	30	1.96
109806258--109806532	134	2.0	134	85	6	345	28	18	22	30	1.98
109806541--109806655	42	2.8	42	87	6	155	29	24	21	24	1.99
109811530--109811570	19	2.2	19	90	0	64	34	0	9	56	1.32

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356