Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  14  of  356  ( 42641 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4872645--4872680
13
2.8
14
84
16
51
27
25
0
47
1.52
4873317--4873360
15
2.9
15
75
0
52
52
15
2
29
1.55
4874858--4874886
13
2.1
14
93
6
51
44
3
0
51
1.18
4875271--4875309
16
2.4
17
87
12
55
53
0
2
43
1.14
4875402--4875439
7
5.4
7
96
0
58
60
7
0
31
1.25
4879578--4879680
51
2.0
51
90
3
163
27
16
22
33
1.95
4883745--4883800
21
2.6
21
72
10
60
35
0
3
60
1.14
4893873--4893902
15
1.9
16
93
6
53
20
3
10
66
1.35
4913826--4913859
17
2.1
15
89
10
50
0
11
5
82
0.83
4916121--4916193
35
2.1
35
100
0
146
34
17
8
39
1.80
4922296--4922320
6
4.2
6
100
0
50
0
16
0
84
0.63
4927816--4927883
31
2.4
26
76
21
66
38
4
2
54
1.36
4930066--4930109
20
2.2
20
91
0
70
38
20
11
29
1.87
4930892--4930960
21
3.4
21
71
15
72
36
1
7
55
1.37
4931083--4931108
8
3.2
8
100
0
52
50
0
0
50
1.00
4932082--4932124
12
3.5
12
81
6
59
46
4
13
34
1.65
4932077--4932128
25
2.1
25
100
0
104
44
3
17
34
1.67
4932077--4932124
12
3.8
12
78
8
51
45
4
16
33
1.67
4938002--4938070
21
3.4
21
69
15
63
37
1
7
53
1.38
4938195--4938220
8
3.2
8
100
0
52
50
0
0
50
1.00
4938241--4938310
24
3.1
23
73
18
67
51
4
12
31
1.59
4939192--4939234
12
3.5
12
81
6
59
46
4
13
34
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4939187--4939238
25
2.1
25
100
0
104
44
3
17
34
1.67
4939187--4939234
12
3.8
12
78
8
51
45
4
16
33
1.67
4942754--4942791
19
2.0
19
94
0
67
34
5
23
36
1.78
4950305--4950356
27
1.9
27
88
0
77
38
3
1
55
1.29
4950305--4950371
27
2.5
27
82
4
73
43
2
1
52
1.25
4952102--4952126
7
3.6
7
100
0
50
12
12
0
76
1.04
4957655--4957683
13
2.1
14
93
6
51
0
10
0
89
0.48
4958084--4958121
15
2.5
15
91
0
58
65
2
2
28
1.19
4964240--4964286
19
2.5
20
73
13
55
57
2
0
40
1.11
4975271--4975332
26
2.4
26
97
0
115
27
8
8
56
1.56
4975415--4975454
17
2.4
17
87
8
55
67
0
0
32
0.91
4977863--4977901
15
2.5
16
87
4
53
38
0
0
61
0.96
4982013--4982063
6
8.8
6
82
8
52
72
1
25
0
0.95
4982020--4982065
16
2.7
18
76
13
51
76
2
21
0
0.90
4986837--4986864
5
5.6
5
100
0
56
78
0
21
0
0.75
4990825--4990863
14
3.0
13
82
10
53
46
0
0
53
1.00
4993535--4993671
64
2.2
63
97
1
256
40
17
5
36
1.74
4995632--4995666
16
2.3
16
90
9
56
62
5
0
31
1.18
5000500--5000524
12
2.1
12
100
0
50
16
0
0
84
0.63
5002006--5002053
9
4.9
10
80
14
55
64
0
2
33
1.05
5002930--5002972
10
4.2
10
88
5
68
76
0
0
23
0.78
5002930--5002972
21
2.1
20
91
4
68
76
0
0
23
0.78
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5004645--5004695
2
25.5
2
100
0
102
0
49
0
50
1.00
5004923--5004962
19
2.1
19
100
0
80
20
30
0
50
1.49
5010517--5010554
14
2.7
14
91
0
58
50
7
7
34
1.61
5010538--5010582
19
2.3
20
96
3
83
28
11
11
48
1.73
5015715--5015749
16
2.2
16
90
10
54
40
2
0
57
1.14
5020822--5020863
19
2.2
20
91
4
68
26
9
11
52
1.68
5020942--5020976
16
2.2
16
90
10
54
42
0
2
54
1.15
5022496--5022535
14
2.9
14
84
0
53
32
7
17
42
1.77
5022519--5022558
20
2.0
20
90
0
62
27
10
12
50
1.72
5022504--5022570
34
1.9
35
90
3
109
31
8
13
46
1.74
5022498--5022574
14
5.0
15
71
20
52
32
9
15
42
1.78
5022657--5022684
14
2.0
14
100
0
56
42
0
0
57
0.99
5023960--5024028
35
1.9
36
97
2
131
52
18
2
26
1.60
5023996--5024065
27
2.5
28
81
6
81
52
21
2
22
1.60
5025557--5025589
15
2.1
16
94
5
59
60
6
18
15
1.54
5027983--5028034
25
2.1
25
85
7
70
40
11
25
23
1.88
5034833--5034867
16
2.2
16
90
10
54
40
2
0
57
1.14
5035049--5035109
28
2.2
27
77
8
70
60
18
4
16
1.52
5036775--5036801
5
5.4
5
100
0
54
81
0
0
18
0.69
5046395--5046468
37
2.0
37
97
0
139
52
24
12
10
1.70
5046578--5046705
61
2.1
61
97
1
238
45
17
14
21
1.85
5046581--5046679
33
3.2
33
61
19
84
46
16
16
21
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5049896--5049949
24
2.2
24
90
0
81
48
18
3
29
1.65
5050381--5050440
25
2.4
25
94
0
102
36
1
8
53
1.41
5051611--5051670
31
1.9
31
93
6
104
35
1
0
63
1.05
5051976--5052049
30
2.6
29
78
17
84
74
0
25
0
0.82
5051976--5052048
28
2.6
27
83
12
94
75
0
24
0
0.81
5052207--5052314
33
3.4
32
69
20
84
37
0
12
50
1.40
5052205--5052323
60
2.0
60
88
3
177
35
0
13
51
1.41
5052639--5052671
15
2.2
15
100
0
66
48
6
6
39
1.53
5054530--5054587
5
10.8
5
80
12
62
43
0
1
55
1.10
5054531--5054588
8
6.7
9
74
21
61
43
0
1
55
1.10
5054533--5054588
12
4.5
12
81
16
69
42
0
1
55
1.10
5055904--5055942
18
2.1
19
90
4
62
41
0
10
48
1.37
5056181--5056315
39
3.4
39
73
6
103
24
19
27
28
1.98
5056438--5056478
19
2.2
19
87
12
59
46
0
24
29
1.53
5068469--5068619
71
2.1
72
91
2
243
30
29
17
23
1.97
5068539--5068758
103
2.1
102
90
4
352
31
31
19
17
1.95
5068632--5068682
26
2.0
26
96
0
93
29
35
23
11
1.90
5069089--5069152
30
2.2
29
81
10
76
29
28
6
35
1.82
5069096--5069152
30
1.9
30
85
3
80
29
24
7
38
1.82
5075048--5075086
18
2.1
19
90
4
62
41
0
10
48
1.37
5075326--5075460
39
3.4
39
73
6
103
24
20
27
28
1.99
5075583--5075623
19
2.2
19
87
12
59
46
0
24
29
1.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5081184--5081242
25
2.7
21
76
20
66
64
0
3
32
1.10
5083122--5083164
19
2.3
18
84
4
50
62
4
0
32
1.15
5098878--5098974
33
2.8
35
72
20
89
45
3
1
50
1.24
5103202--5103233
14
2.4
14
94
5
57
65
6
0
28
1.16
5104307--5104347
11
3.7
11
80
0
55
21
14
7
56
1.63
5104387--5104445
30
2.0
29
90
9
93
30
3
8
57
1.45
5104568--5104596
11
2.6
11
100
0
58
65
0
0
34
0.93
5107367--5107396
15
2.0
15
93
0
51
70
0
0
30
0.88
5122313--5122387
27
2.9
27
76
11
68
44
2
4
49
1.35
5123314--5123365
20
2.5
20
76
14
61
26
11
7
53
1.63
5130910--5130953
18
2.4
19
85
7
56
27
2
0
70
0.99
5147226--5148284
210
5.1
210
89
2
1562
28
17
22
30
1.97
5147226--5148403
420
2.8
414
86
3
1668
28
17
22
30
1.97
5148482--5148589
45
2.4
45
82
1
128
33
12
29
24
1.92
5148501--5148592
45
2.0
45
87
0
130
29
13
30
27
1.94
5149819--5149968
39
3.9
38
88
4
194
47
5
18
29
1.70
5149819--5149968
77
1.9
78
86
4
214
47
5
18
29
1.70
5150680--5150718
18
2.0
20
90
9
64
30
5
7
56
1.49
5158073--5158146
23
3.2
23
62
27
57
28
13
5
52
1.62
5158059--5158151
46
2.0
46
97
0
177
31
11
8
48
1.70
5164332--5164372
21
2.0
21
90
0
64
29
21
29
19
1.98
5172260--5172301
21
2.0
20
82
13
50
61
0
0
38
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5175836--5175878
14
3.0
14
76
6
50
55
4
0
39
1.20
5184245--5184312
29
2.3
29
80
5
75
45
8
1
44
1.44
5190393--5190439
17
2.7
18
87
9
62
31
12
10
44
1.77
5192329--5192391
3
20.7
3
83
3
72
58
4
1
34
1.29
5193753--5193804
24
2.2
24
89
0
77
55
9
1
32
1.43
5195722--5195773
24
2.2
24
89
0
77
55
9
1
32
1.43
5204237--5204327
41
2.2
41
84
5
112
29
2
7
60
1.36
5224428--5224464
20
1.9
18
89
10
56
35
21
0
43
1.53
5225404--5225651
45
5.6
45
75
12
174
29
24
20
25
1.99
5225489--5225584
44
2.2
44
79
5
106
28
26
18
27
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356