genome.fa.s11.2.7.7.80.10.50.1000.150.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: A11
Parameters: 2 7 7 80 10 50 1000
Length:  114316535

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356   

This is table  150  of  356  ( 42641 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48272875--48273361	190	2.6	190	93	0	816	29	29	8	32	1.87
48272875--48273365	237	2.1	235	93	0	829	29	29	8	32	1.87
48276330--48276432	42	2.4	42	82	4	118	28	26	19	26	1.99
48276948--48277012	28	2.4	29	73	17	68	35	23	4	36	1.75
48281324--48281506	79	2.3	80	81	8	212	24	27	22	25	2.00
48281326--48281506	40	4.6	40	82	6	208	23	27	23	25	2.00
48289239--48289422	40	4.6	40	77	10	171	25	28	21	24	1.99
48289239--48289423	79	2.3	82	82	5	218	25	28	21	24	1.99
48292483--48292739	40	6.5	40	88	3	351	24	22	27	24	2.00
48292479--48292745	119	2.2	119	86	5	362	25	22	26	25	2.00
48301534--48301575	19	2.2	19	100	0	84	45	9	7	38	1.64
48306487--48306795	48	6.5	48	77	9	217	24	27	20	27	1.99
48306492--48306751	49	5.4	49	76	11	220	24	27	20	27	1.99
48306492--48306751	92	2.7	98	78	7	239	24	27	20	27	1.99
48306675--48306795	46	2.5	48	84	4	147	23	29	19	27	1.98
48310439--48310612	49	3.6	48	78	5	172	23	23	21	31	1.99
48310627--48310803	46	3.8	45	83	9	171	22	28	20	28	1.98
48312221--48312374	43	3.7	42	75	8	152	25	18	25	30	1.98
48312245--48312350	41	2.5	42	79	10	110	27	16	23	33	1.95
48315590--48315706	57	2.1	57	90	3	182	47	5	17	29	1.71
48318730--48318841	43	2.6	42	83	4	127	25	16	25	31	1.97
48324011--48324094	43	2.0	43	92	0	141	22	15	29	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48324139--48324238	51	2.0	51	81	0	119	25	16	28	31	1.96
48339702--48339846	40	3.6	40	85	4	193	25	24	26	23	2.00
48352247--48352290	14	3.1	14	87	6	54	27	0	54	18	1.44
48352255--48352290	7	5.1	7	93	0	63	25	0	58	16	1.38
48355020--48355200	40	4.5	40	94	0	290	22	23	29	25	1.99
48360872--48360970	7	14.1	7	71	8	58	38	41	1	19	1.58
48361013--48361092	21	3.9	21	71	21	78	43	26	1	28	1.62
48361257--48361352	41	2.4	39	79	8	111	15	21	21	40	1.91
48361257--48361383	40	3.1	40	83	5	139	18	20	21	40	1.92
48361275--48361383	41	2.6	41	86	4	139	19	20	21	39	1.93
48364496--48364530	18	2.0	17	88	5	52	42	0	5	51	1.25
48365549--48365707	80	2.0	80	94	0	282	36	7	11	44	1.69
48377735--48377915	49	3.7	47	74	12	143	25	30	17	27	1.97
48379946--48379992	23	2.0	24	88	12	71	27	0	29	42	1.56
48381204--48381327	60	2.1	60	86	1	169	24	13	25	36	1.92
48389658--48389780	42	2.9	42	80	7	158	26	24	17	31	1.97
48390662--48390713	24	2.2	24	89	0	77	46	15	7	30	1.74
48395419--48395452	17	2.1	17	88	5	52	38	5	17	38	1.74
48403406--48403431	3	8.7	3	100	0	52	30	0	0	69	0.89
48404365--48404405	16	2.6	16	88	0	55	70	0	2	26	0.99
48404744--48404836	10	9.7	9	75	16	80	26	5	2	65	1.25
48404745--48404836	21	4.7	20	81	16	88	26	5	2	66	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48404744--48404836	20	4.8	19	81	11	93	26	5	2	65	1.25
48406373--48406465	46	2.0	46	95	2	170	33	6	11	48	1.65
48406801--48406830	14	2.1	14	93	0	51	23	0	0	76	0.78
48407094--48407135	20	2.1	20	90	0	66	66	4	4	23	1.30
48408201--48408256	21	2.6	21	85	2	76	62	1	7	28	1.32
48408201--48408258	3	19.0	3	75	3	53	62	1	6	29	1.31
48408538--48409060	3	174.3	3	68	14	116	60	2	9	26	1.42
48410193--48410228	19	1.9	19	88	5	56	63	0	0	36	0.94
48413791--48413957	46	3.6	45	80	6	174	29	18	28	23	1.98
48421482--48421572	46	2.0	46	84	0	119	29	21	30	17	1.96
48421624--48421762	49	2.8	49	84	0	179	30	18	24	25	1.98
48425551--48425629	37	2.1	37	83	4	106	27	30	17	24	1.97
48425749--48426193	47	9.4	47	92	1	676	29	28	8	33	1.87
48425764--48426189	192	2.2	189	90	2	667	29	28	8	32	1.88
48437663--48437770	37	2.9	37	94	0	180	25	32	19	22	1.97
48437933--48438165	47	5.0	47	90	0	340	25	30	12	31	1.92
48450801--48450851	20	2.5	20	87	0	75	13	33	35	17	1.89
48459136--48459161	13	2.0	13	100	0	52	7	0	30	61	1.24
48464148--48464394	40	6.2	40	79	12	244	23	23	28	25	1.99
48464147--48464371	80	2.8	79	85	4	292	23	23	28	25	1.99
48464148--48464371	119	1.9	120	85	2	317	22	23	28	25	1.99
48464188--48464394	79	2.6	79	86	3	274	23	23	28	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48466276--48466322	24	1.9	25	86	4	69	36	23	12	27	1.91
48466368--48466424	20	2.8	20	94	0	96	35	14	21	29	1.92
48466475--48466618	24	6.0	24	87	2	200	27	20	23	29	1.99
48474269--48474316	25	1.9	25	91	0	78	35	25	12	27	1.92
48474370--48474426	20	2.8	20	94	0	96	35	14	21	29	1.92
48474477--48474671	24	8.4	24	83	8	242	29	18	22	29	1.98
48474593--48474671	41	1.9	42	89	2	124	29	16	24	30	1.96
48474564--48474685	65	1.9	63	84	6	156	27	18	23	31	1.97
48475748--48475878	46	2.8	46	79	2	138	25	28	17	29	1.97
48484001--48484213	45	4.9	42	83	10	202	24	29	21	24	1.99
48484040--48484216	45	4.0	44	89	5	245	24	28	22	23	1.99
48483994--48484216	90	2.6	87	83	9	262	25	28	21	24	1.99
48484301--48484338	19	2.0	20	84	5	51	23	13	0	63	1.30
48485038--48485109	25	2.9	25	89	2	101	45	9	18	26	1.80
48489679--48489711	15	2.2	15	89	10	50	81	0	6	12	0.85
48494523--48494903	48	7.9	48	77	6	324	27	28	16	28	1.97
48494523--48494903	96	3.9	96	87	0	528	27	28	16	28	1.97
48494535--48494903	144	2.5	144	80	6	397	27	27	16	28	1.97
48497151--48497322	93	1.8	93	92	0	290	27	29	20	21	1.98
48497143--48497318	46	3.8	46	78	10	196	28	28	20	21	1.98
48499815--48499848	17	2.0	17	88	0	50	55	8	14	20	1.65
48502575--48502799	40	5.6	40	83	2	281	23	27	24	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48502539--48502799	80	3.3	80	82	3	294	23	26	24	25	2.00
48507124--48507173	22	2.3	22	93	6	84	38	2	4	56	1.30
48507125--48507165	12	3.5	12	77	16	50	34	2	4	58	1.32
48508671--48508707	19	1.9	19	88	0	56	48	0	0	51	1.00
48509773--48509810	19	2.0	19	85	10	51	36	0	2	60	1.11
48513614--48513751	44	3.2	43	82	9	138	34	27	13	24	1.93
48513594--48513751	42	3.7	44	75	12	157	33	29	13	23	1.93
48513594--48513755	86	1.9	85	82	6	202	34	28	14	22	1.93
48521269--48521408	44	3.3	42	81	7	131	31	25	17	26	1.97
48521251--48521408	42	3.7	44	73	12	148	30	25	18	25	1.98
48524712--48524872	79	2.1	78	96	1	295	56	7	19	16	1.63
48525002--48525077	36	2.1	36	95	0	134	44	14	1	39	1.53
48525038--48525083	23	2.0	23	95	0	83	45	15	0	39	1.46
48525002--48525080	13	6.5	13	71	21	73	45	13	1	39	1.52
48525043--48525089	23	2.0	23	91	0	76	51	10	0	38	1.37
48533716--48533920	93	2.2	93	85	0	275	26	25	14	33	1.94
48533811--48534074	61	4.3	61	83	2	307	25	23	15	35	1.94
48535036--48535205	85	2.0	85	100	0	340	30	15	18	35	1.92
48535994--48536059	33	2.0	33	100	0	132	36	3	12	48	1.56
48536000--48536072	33	2.3	31	86	11	96	36	4	12	46	1.61
48542447--48542524	29	2.7	28	84	11	104	25	14	30	29	1.94
48542477--48542804	174	1.9	174	95	0	593	29	14	25	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48550576--48550653	29	2.7	28	84	11	104	25	14	30	29	1.94
48550606--48550933	174	1.9	174	96	0	602	29	14	24	30	1.95
48556458--48556531	37	2.0	37	89	0	112	20	29	16	33	1.94
48566861--48566980	43	2.8	44	83	6	140	35	25	12	27	1.92
48569779--48569870	32	2.8	33	76	14	93	27	26	20	26	1.99
48597500--48597713	27	8.0	27	87	0	277	23	13	19	43	1.86
48597500--48597715	81	2.7	81	88	0	317	23	13	19	43	1.86
48601258--48601471	27	8.0	27	79	2	216	24	14	17	42	1.87
48601787--48601862	24	3.2	24	86	0	98	23	19	11	44	1.84
48601837--48601883	18	2.6	18	80	6	51	19	19	14	46	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   326   327   328   329   330   331   332   333   334   335   336   
          337   338   339   340   341   342   343   344   345   346   347   348   349   350   351   352   
          353   354   355   356